EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000006195 (Gene tree)
Gene ID: 102234775
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 8584 bases
Position: chr17:16345738-16354321
Accession: 102234775
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000006212	Exo_endo_phos	PF03372.23	2.5e-20	1	1
ENSXMAP00000035010	Exo_endo_phos	PF03372.23	2.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000006219	-	4440	XM_005801160	ENSXMAP00000006212	310 (aa)	XP_005801217	M3ZVG8
ENSXMAT00000029334	-	981	-	ENSXMAP00000035010	326 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000006195's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000006195's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000006195	apex1	99	66.772	ENSG00000100823	APEX1	95	69.103	Homo_sapiens
ENSXMAG00000006195	apex1	100	90.323	ENSAPOG00000017002	apex1	100	90.323	Acanthochromis_polyacanthus
ENSXMAG00000006195	apex1	99	67.722	ENSAMEG00000005418	APEX1	93	67.752	Ailuropoda_melanoleuca
ENSXMAG00000006195	apex1	89	91.697	ENSACIG00000010653	apex1	95	91.786	Amphilophus_citrinellus
ENSXMAG00000006195	apex1	100	89.677	ENSAOCG00000009649	apex1	100	89.677	Amphiprion_ocellaris
ENSXMAG00000006195	apex1	100	90.000	ENSAPEG00000021453	apex1	100	90.000	Amphiprion_percula
ENSXMAG00000006195	apex1	99	93.204	ENSATEG00000002883	apex1	97	93.204	Anabas_testudineus
ENSXMAG00000006195	apex1	99	68.571	ENSACAG00000008099	APEX1	88	72.857	Anolis_carolinensis
ENSXMAG00000006195	apex1	99	67.722	ENSANAG00000030117	APEX1	100	67.296	Aotus_nancymaae
ENSXMAG00000006195	apex1	100	90.968	ENSACLG00000018441	apex1	100	90.968	Astatotilapia_calliptera
ENSXMAG00000006195	apex1	99	85.806	ENSAMXG00000034699	apex1	99	85.484	Astyanax_mexicanus
ENSXMAG00000006195	apex1	90	71.326	ENSBTAG00000002745	APEX1	93	67.101	Bos_taurus
ENSXMAG00000006195	apex1	93	41.319	WBGene00001372	exo-3	92	43.233	Caenorhabditis_elegans
ENSXMAG00000006195	apex1	99	67.722	ENSCJAG00000009726	APEX1	100	67.296	Callithrix_jacchus
ENSXMAG00000006195	apex1	99	68.038	ENSCAFG00000032033	APEX1	100	67.296	Canis_familiaris
ENSXMAG00000006195	apex1	99	68.038	ENSCAFG00020014377	-	100	67.296	Canis_lupus_dingo
ENSXMAG00000006195	apex1	53	61.765	ENSCAFG00020023002	-	96	60.465	Canis_lupus_dingo
ENSXMAG00000006195	apex1	99	66.456	ENSCHIG00000007298	-	93	67.101	Capra_hircus
ENSXMAG00000006195	apex1	100	52.412	ENSCHIG00000014537	-	100	51.768	Capra_hircus
ENSXMAG00000006195	apex1	99	66.456	ENSTSYG00000034813	APEX1	93	66.775	Carlito_syrichta
ENSXMAG00000006195	apex1	93	63.793	ENSCAPG00000016235	APEX1	91	72.034	Cavia_aperea
ENSXMAG00000006195	apex1	99	67.722	ENSCPOG00000030909	APEX1	93	68.404	Cavia_porcellus
ENSXMAG00000006195	apex1	99	58.544	ENSCCAG00000031931	-	100	58.491	Cebus_capucinus
ENSXMAG00000006195	apex1	99	67.722	ENSCCAG00000033056	-	100	67.296	Cebus_capucinus
ENSXMAG00000006195	apex1	99	66.456	ENSCATG00000015580	APEX1	88	71.326	Cercocebus_atys
ENSXMAG00000006195	apex1	99	67.405	ENSCLAG00000001002	APEX1	93	67.752	Chinchilla_lanigera
ENSXMAG00000006195	apex1	99	66.772	ENSCSAG00000016670	-	88	71.685	Chlorocebus_sabaeus
ENSXMAG00000006195	apex1	99	66.772	ENSCSAG00000016685	-	88	71.685	Chlorocebus_sabaeus
ENSXMAG00000006195	apex1	99	69.937	ENSCPBG00000009567	APEX1	99	69.620	Chrysemys_picta_bellii
ENSXMAG00000006195	apex1	98	54.088	ENSCING00000008137	-	99	54.088	Ciona_intestinalis
ENSXMAG00000006195	apex1	86	52.985	ENSCSAVG00000007144	-	100	54.264	Ciona_savignyi
ENSXMAG00000006195	apex1	99	67.089	ENSCANG00000030726	APEX1	88	71.685	Colobus_angolensis_palliatus
ENSXMAG00000006195	apex1	99	65.714	ENSCGRG00001017046	Apex1	88	70.251	Cricetulus_griseus_chok1gshd
ENSXMAG00000006195	apex1	99	65.714	ENSCGRG00000008984	Apex1	88	70.251	Cricetulus_griseus_crigri
ENSXMAG00000006195	apex1	100	87.742	ENSCSEG00000017499	apex1	99	87.742	Cynoglossus_semilaevis
ENSXMAG00000006195	apex1	100	93.226	ENSCVAG00000022075	apex1	100	93.226	Cyprinodon_variegatus
ENSXMAG00000006195	apex1	99	86.084	ENSDARG00000045843	apex1	99	86.084	Danio_rerio
ENSXMAG00000006195	apex1	99	64.241	ENSDNOG00000042234	APEX1	83	68.817	Dasypus_novemcinctus
ENSXMAG00000006195	apex1	99	66.772	ENSDORG00000001616	Apex1	93	67.427	Dipodomys_ordii
ENSXMAG00000006195	apex1	99	67.405	ENSETEG00000004855	-	93	67.427	Echinops_telfairi
ENSXMAG00000006195	apex1	76	60.084	ENSEBUG00000000622	-	92	60.084	Eptatretus_burgeri
ENSXMAG00000006195	apex1	99	68.139	ENSEASG00005017489	APEX1	65	72.760	Equus_asinus_asinus
ENSXMAG00000006195	apex1	99	68.139	ENSECAG00000022325	APEX1	72	72.760	Equus_caballus
ENSXMAG00000006195	apex1	86	72.119	ENSEEUG00000012569	APEX1	93	72.119	Erinaceus_europaeus
ENSXMAG00000006195	apex1	99	82.581	ENSELUG00000021706	apex1	99	84.516	Esox_lucius
ENSXMAG00000006195	apex1	99	68.038	ENSFCAG00000030869	APEX1	93	68.404	Felis_catus
ENSXMAG00000006195	apex1	99	68.354	ENSFDAG00000006120	APEX1	93	68.730	Fukomys_damarensis
ENSXMAG00000006195	apex1	100	92.581	ENSFHEG00000009031	apex1	83	92.581	Fundulus_heteroclitus
ENSXMAG00000006195	apex1	100	76.129	ENSGMOG00000007943	apex1	99	76.129	Gadus_morhua
ENSXMAG00000006195	apex1	100	98.065	ENSGAFG00000005311	apex1	100	98.065	Gambusia_affinis
ENSXMAG00000006195	apex1	100	89.677	ENSGACG00000019497	apex1	99	92.105	Gasterosteus_aculeatus
ENSXMAG00000006195	apex1	99	70.253	ENSGAGG00000014999	APEX1	99	70.570	Gopherus_agassizii
ENSXMAG00000006195	apex1	99	66.456	ENSGGOG00000002128	APEX1	100	66.352	Gorilla_gorilla
ENSXMAG00000006195	apex1	100	90.968	ENSHBUG00000005894	apex1	100	90.968	Haplochromis_burtoni
ENSXMAG00000006195	apex1	99	69.085	ENSHGLG00000002848	APEX1	93	68.404	Heterocephalus_glaber_female
ENSXMAG00000006195	apex1	99	69.085	ENSHGLG00100017878	APEX1	93	68.404	Heterocephalus_glaber_male
ENSXMAG00000006195	apex1	100	86.817	ENSHCOG00000009961	apex1	100	86.817	Hippocampus_comes
ENSXMAG00000006195	apex1	99	83.495	ENSIPUG00000005799	apex1	99	83.495	Ictalurus_punctatus
ENSXMAG00000006195	apex1	99	67.722	ENSSTOG00000010096	APEX1	88	72.401	Ictidomys_tridecemlineatus
ENSXMAG00000006195	apex1	99	60.064	ENSJJAG00000003660	-	93	59.609	Jaculus_jaculus
ENSXMAG00000006195	apex1	92	62.105	ENSJJAG00000020465	-	97	59.547	Jaculus_jaculus
ENSXMAG00000006195	apex1	99	67.093	ENSJJAG00000012067	-	88	71.326	Jaculus_jaculus
ENSXMAG00000006195	apex1	100	91.935	ENSKMAG00000021171	apex1	100	91.935	Kryptolebias_marmoratus
ENSXMAG00000006195	apex1	100	89.032	ENSLBEG00000010248	apex1	100	89.032	Labrus_bergylta
ENSXMAG00000006195	apex1	99	74.359	ENSLACG00000008617	APEX1	100	72.293	Latimeria_chalumnae
ENSXMAG00000006195	apex1	99	77.636	ENSLOCG00000015516	apex1	99	76.677	Lepisosteus_oculatus
ENSXMAG00000006195	apex1	90	72.760	ENSLAFG00000021872	APEX1	94	70.470	Loxodonta_africana
ENSXMAG00000006195	apex1	99	66.456	ENSMFAG00000002565	APEX1	88	71.326	Macaca_fascicularis
ENSXMAG00000006195	apex1	99	66.456	ENSMMUG00000048039	APEX1	88	71.326	Macaca_mulatta
ENSXMAG00000006195	apex1	99	66.877	ENSMNEG00000036944	APEX1	88	71.326	Macaca_nemestrina
ENSXMAG00000006195	apex1	99	66.456	ENSMLEG00000042125	APEX1	88	71.326	Mandrillus_leucophaeus
ENSXMAG00000006195	apex1	100	92.581	ENSMAMG00000023526	apex1	100	92.581	Mastacembelus_armatus
ENSXMAG00000006195	apex1	100	90.968	ENSMZEG00005014187	apex1	100	90.968	Maylandia_zebra
ENSXMAG00000006195	apex1	99	65.924	ENSMAUG00000013994	Apex1	88	69.892	Mesocricetus_auratus
ENSXMAG00000006195	apex1	99	66.772	ENSMICG00000043554	APEX1	88	71.685	Microcebus_murinus
ENSXMAG00000006195	apex1	99	66.877	ENSMOCG00000013721	Apex1	94	68.078	Microtus_ochrogaster
ENSXMAG00000006195	apex1	100	86.174	ENSMMOG00000010031	apex1	97	86.174	Mola_mola
ENSXMAG00000006195	apex1	90	70.251	ENSMODG00000007125	APEX1	100	64.062	Monodelphis_domestica
ENSXMAG00000006195	apex1	90	83.571	ENSMALG00000011699	apex1	75	83.571	Monopterus_albus
ENSXMAG00000006195	apex1	99	68.471	MGP_CAROLIEiJ_G0019209	Apex1	99	68.471	Mus_caroli
ENSXMAG00000006195	apex1	99	68.571	ENSMUSG00000035960	Apex1	99	68.571	Mus_musculus
ENSXMAG00000006195	apex1	99	68.571	MGP_PahariEiJ_G0030232	Apex1	99	68.571	Mus_pahari
ENSXMAG00000006195	apex1	99	68.571	MGP_SPRETEiJ_G0020101	Apex1	99	68.571	Mus_spretus
ENSXMAG00000006195	apex1	99	66.667	ENSMLUG00000028957	APEX1	94	67.427	Myotis_lucifugus
ENSXMAG00000006195	apex1	99	67.089	ENSNGAG00000002725	-	93	67.427	Nannospalax_galili
ENSXMAG00000006195	apex1	87	54.513	ENSNGAG00000021748	-	72	58.333	Nannospalax_galili
ENSXMAG00000006195	apex1	100	90.968	ENSNBRG00000005334	apex1	91	90.968	Neolamprologus_brichardi
ENSXMAG00000006195	apex1	99	66.456	ENSNLEG00000010839	APEX1	100	67.412	Nomascus_leucogenys
ENSXMAG00000006195	apex1	99	65.495	ENSMEUG00000014519	APEX1	100	65.605	Notamacropus_eugenii
ENSXMAG00000006195	apex1	99	66.772	ENSOPRG00000014029	APEX1	88	70.968	Ochotona_princeps
ENSXMAG00000006195	apex1	90	55.197	ENSODEG00000004777	-	83	58.730	Octodon_degus
ENSXMAG00000006195	apex1	99	68.038	ENSODEG00000001703	-	93	68.404	Octodon_degus
ENSXMAG00000006195	apex1	99	52.351	ENSODEG00000006583	-	93	52.716	Octodon_degus
ENSXMAG00000006195	apex1	100	90.968	ENSONIG00000012089	apex1	100	90.968	Oreochromis_niloticus
ENSXMAG00000006195	apex1	92	68.421	ENSOANG00000008836	APEX1	74	65.472	Ornithorhynchus_anatinus
ENSXMAG00000006195	apex1	99	67.722	ENSOCUG00000005022	APEX1	100	67.296	Oryctolagus_cuniculus
ENSXMAG00000006195	apex1	100	91.640	ENSORLG00000012378	apex1	100	91.640	Oryzias_latipes
ENSXMAG00000006195	apex1	100	91.640	ENSORLG00020021371	apex1	100	91.640	Oryzias_latipes_hni
ENSXMAG00000006195	apex1	100	91.640	ENSORLG00015020089	apex1	100	91.640	Oryzias_latipes_hsok
ENSXMAG00000006195	apex1	100	90.997	ENSOMEG00000018876	apex1	100	90.997	Oryzias_melastigma
ENSXMAG00000006195	apex1	99	67.722	ENSOGAG00000013335	-	88	72.760	Otolemur_garnettii
ENSXMAG00000006195	apex1	90	64.516	ENSOGAG00000029355	-	89	64.516	Otolemur_garnettii
ENSXMAG00000006195	apex1	96	57.947	ENSOARG00000014424	-	89	59.498	Ovis_aries
ENSXMAG00000006195	apex1	90	71.685	ENSOARG00000019740	-	93	67.427	Ovis_aries
ENSXMAG00000006195	apex1	86	68.401	ENSOARG00000001876	-	93	64.310	Ovis_aries
ENSXMAG00000006195	apex1	99	66.772	ENSPPAG00000038760	APEX1	100	67.732	Pan_paniscus
ENSXMAG00000006195	apex1	99	68.038	ENSPPRG00000011794	APEX1	88	72.760	Panthera_pardus
ENSXMAG00000006195	apex1	99	68.038	ENSPTIG00000014829	APEX1	93	68.404	Panthera_tigris_altaica
ENSXMAG00000006195	apex1	99	66.772	ENSPTRG00000006093	APEX1	100	67.732	Pan_troglodytes
ENSXMAG00000006195	apex1	99	66.456	ENSPANG00000022757	APEX1	88	71.326	Papio_anubis
ENSXMAG00000006195	apex1	89	88.043	ENSPKIG00000003504	apex1	99	84.615	Paramormyrops_kingsleyae
ENSXMAG00000006195	apex1	86	77.323	ENSPMGG00000016596	apex1	79	77.323	Periophthalmus_magnuspinnatus
ENSXMAG00000006195	apex1	99	66.984	ENSPEMG00000019097	Apex1	88	71.685	Peromyscus_maniculatus_bairdii
ENSXMAG00000006195	apex1	93	71.821	ENSPMAG00000007275	-	95	73.118	Petromyzon_marinus
ENSXMAG00000006195	apex1	90	69.534	ENSPCIG00000023274	APEX1	98	64.444	Phascolarctos_cinereus
ENSXMAG00000006195	apex1	100	97.742	ENSPFOG00000004178	apex1	100	97.742	Poecilia_formosa
ENSXMAG00000006195	apex1	100	97.742	ENSPLAG00000012779	apex1	100	97.742	Poecilia_latipinna
ENSXMAG00000006195	apex1	100	97.742	ENSPMEG00000019623	apex1	100	97.742	Poecilia_mexicana
ENSXMAG00000006195	apex1	100	96.129	ENSPREG00000014298	apex1	99	96.129	Poecilia_reticulata
ENSXMAG00000006195	apex1	99	66.456	ENSPPYG00000005565	APEX1	100	66.352	Pongo_abelii
ENSXMAG00000006195	apex1	99	65.506	ENSPCAG00000010376	APEX1	100	65.094	Procavia_capensis
ENSXMAG00000006195	apex1	99	67.089	ENSPCOG00000021564	APEX1	88	72.043	Propithecus_coquereli
ENSXMAG00000006195	apex1	99	66.667	ENSPVAG00000010736	APEX1	87	72.043	Pteropus_vampyrus
ENSXMAG00000006195	apex1	100	91.290	ENSPNYG00000023940	apex1	100	91.290	Pundamilia_nyererei
ENSXMAG00000006195	apex1	92	86.014	ENSPNAG00000020897	apex1	96	85.965	Pygocentrus_nattereri
ENSXMAG00000006195	apex1	99	67.619	ENSRNOG00000009663	Apex1	88	72.401	Rattus_norvegicus
ENSXMAG00000006195	apex1	99	66.772	ENSRBIG00000038325	APEX1	87	71.685	Rhinopithecus_bieti
ENSXMAG00000006195	apex1	99	60.000	ENSSBOG00000031372	-	100	60.586	Saimiri_boliviensis_boliviensis
ENSXMAG00000006195	apex1	90	72.401	ENSSBOG00000018921	-	100	67.296	Saimiri_boliviensis_boliviensis
ENSXMAG00000006195	apex1	99	63.665	ENSSHAG00000013524	APEX1	99	63.665	Sarcophilus_harrisii
ENSXMAG00000006195	apex1	99	81.290	ENSSFOG00015001948	apex1	99	81.877	Scleropages_formosus
ENSXMAG00000006195	apex1	100	86.032	ENSSMAG00000013348	apex1	100	86.349	Scophthalmus_maximus
ENSXMAG00000006195	apex1	100	91.613	ENSSDUG00000016377	apex1	99	91.613	Seriola_dumerili
ENSXMAG00000006195	apex1	100	91.290	ENSSLDG00000023005	apex1	100	91.290	Seriola_lalandi_dorsalis
ENSXMAG00000006195	apex1	99	68.506	ENSSPUG00000000531	APEX1	99	70.890	Sphenodon_punctatus
ENSXMAG00000006195	apex1	100	88.710	ENSSPAG00000000458	apex1	100	88.710	Stegastes_partitus
ENSXMAG00000006195	apex1	99	67.405	ENSSSCG00000040060	-	99	67.405	Sus_scrofa
ENSXMAG00000006195	apex1	95	40.594	ENSSSCG00000039705	-	89	42.960	Sus_scrofa
ENSXMAG00000006195	apex1	76	58.298	ENSTGUG00000014378	APEX1	100	58.298	Taeniopygia_guttata
ENSXMAG00000006195	apex1	100	83.387	ENSTRUG00000004268	apex1	95	84.345	Takifugu_rubripes
ENSXMAG00000006195	apex1	100	84.516	ENSTNIG00000005778	apex1	100	84.516	Tetraodon_nigroviridis
ENSXMAG00000006195	apex1	99	64.557	ENSTBEG00000006405	APEX1	93	64.821	Tupaia_belangeri
ENSXMAG00000006195	apex1	76	71.064	ENSTTRG00000007860	APEX1	100	71.064	Tursiops_truncatus
ENSXMAG00000006195	apex1	99	67.405	ENSUAMG00000010457	APEX1	93	67.752	Ursus_americanus
ENSXMAG00000006195	apex1	99	67.405	ENSUMAG00000009178	APEX1	93	67.752	Ursus_maritimus
ENSXMAG00000006195	apex1	76	66.383	ENSVPAG00000005083	APEX1	100	66.383	Vicugna_pacos
ENSXMAG00000006195	apex1	99	67.722	ENSVVUG00000009010	APEX1	100	66.981	Vulpes_vulpes
ENSXMAG00000006195	apex1	99	68.471	ENSXETG00000024773	apex1	99	68.153	Xenopus_tropicalis
ENSXMAG00000006195	apex1	100	100.000	ENSXCOG00000015233	apex1	99	100.000	Xiphophorus_couchianus