EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000006196 (Gene tree)
Gene ID
102229160
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein nuclear 1
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Plus strand
Length
12258 bases
Position
chr21:16404578-16416835
Accession
102229160
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000039586RRM_1PF00076.222.6e-1711
ENSXMAP00000006219RRM_1PF00076.224.2e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000006226-2317XM_005803650ENSXMAP00000006219294 (aa)XP_005803707M3ZVH5
ENSXMAT00000024061-3440XM_005803651ENSXMAP00000039586234 (aa)XP_005803708UPI0003B59596
Gene Model
Click here to download ENSXMAG00000006196's gene model file
Pathways
Pathway IDPathway NameSource
xma03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000006196's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000006196pabpn18681.643ENSG00000100836PABPN19478.698Homo_sapiens
ENSXMAG00000006196pabpn19971.795ENSG00000258643BCL2L2-PABPN17070.085Homo_sapiens
ENSXMAG00000006196pabpn110097.863ENSAPOG00000016425pabpn110097.863Acanthochromis_polyacanthus
ENSXMAG00000006196pabpn18183.246ENSAMEG00000007048BCL2L2-PABPN110081.152Ailuropoda_melanoleuca
ENSXMAG00000006196pabpn110093.243ENSACIG00000021744pabpn110097.191Amphilophus_citrinellus
ENSXMAG00000006196pabpn110097.863ENSAOCG00000015805pabpn110097.863Amphiprion_ocellaris
ENSXMAG00000006196pabpn110097.863ENSAPEG00000009623pabpn110097.863Amphiprion_percula
ENSXMAG00000006196pabpn110098.291ENSATEG00000020531pabpn110098.291Anabas_testudineus
ENSXMAG00000006196pabpn18186.387ENSACAG00000006185-8171.369Anolis_carolinensis
ENSXMAG00000006196pabpn19968.016ENSANAG00000024513-8473.251Aotus_nancymaae
ENSXMAG00000006196pabpn110092.929ENSACLG00000016374pabpn110091.246Astatotilapia_calliptera
ENSXMAG00000006196pabpn110097.009ENSAMXG00000000452pabpn110097.009Astyanax_mexicanus
ENSXMAG00000006196pabpn18475.253ENSBTAG00000050594-6784.091Bos_taurus
ENSXMAG00000006196pabpn18482.915ENSBTAG00000006884PABPN18667.170Bos_taurus
ENSXMAG00000006196pabpn18282.383ENSBTAG00000053753-7180.311Bos_taurus
ENSXMAG00000006196pabpn16158.904WBGene00003904pabp-27158.904Caenorhabditis_elegans
ENSXMAG00000006196pabpn19975.214ENSCJAG00000007960-8473.932Callithrix_jacchus
ENSXMAG00000006196pabpn17179.290ENSCJAG00000004407-8476.923Callithrix_jacchus
ENSXMAG00000006196pabpn18681.643ENSCAFG00000011482PABPN18668.679Canis_familiaris
ENSXMAG00000006196pabpn18681.643ENSCAFG00020006651-8668.302Canis_lupus_dingo
ENSXMAG00000006196pabpn18681.643ENSCAFG00020007298-8668.302Canis_lupus_dingo
ENSXMAG00000006196pabpn18681.643ENSCHIG00000012184PABPN18668.302Capra_hircus
ENSXMAG00000006196pabpn19971.795ENSTSYG00000033996BCL2L2-PABPN19478.698Carlito_syrichta
ENSXMAG00000006196pabpn16080.714ENSCAPG00000009461-9280.000Cavia_aperea
ENSXMAG00000006196pabpn18681.159ENSCPOG00000025574PABPN16879.048Cavia_porcellus
ENSXMAG00000006196pabpn19975.214ENSCCAG00000033954BCL2L2-PABPN18473.932Cebus_capucinus
ENSXMAG00000006196pabpn19975.214ENSCATG00000038536BCL2L2-PABPN18473.932Cercocebus_atys
ENSXMAG00000006196pabpn16580.921ENSCLAG00000012423PABPN15678.289Chinchilla_lanigera
ENSXMAG00000006196pabpn18680.193ENSCSAG00000016036PABPN16878.095Chlorocebus_sabaeus
ENSXMAG00000006196pabpn18972.038ENSCHOG00000004798BCL2L2-PABPN19268.326Choloepus_hoffmanni
ENSXMAG00000006196pabpn17184.024ENSCPBG00000026060-9481.065Chrysemys_picta_bellii
ENSXMAG00000006196pabpn19061.033ENSCING00000012468-7468.263Ciona_intestinalis
ENSXMAG00000006196pabpn17662.222ENSCSAVG00000002001-7371.545Ciona_savignyi
ENSXMAG00000006196pabpn19971.795ENSCANG00000009750BCL2L2-PABPN19478.698Colobus_angolensis_palliatus
ENSXMAG00000006196pabpn18570.352ENSCANG00000030980-8762.762Colobus_angolensis_palliatus
ENSXMAG00000006196pabpn18681.159ENSCGRG00001019696Pabpn19478.107Cricetulus_griseus_chok1gshd
ENSXMAG00000006196pabpn16290.476ENSCGRG00000011102Pabpn19091.034Cricetulus_griseus_crigri
ENSXMAG00000006196pabpn110096.581ENSCSEG00000008774pabpn110096.581Cynoglossus_semilaevis
ENSXMAG00000006196pabpn110097.619ENSCVAG00000003152pabpn110097.619Cyprinodon_variegatus
ENSXMAG00000006196pabpn18452.551ENSDARG00000087996pabpn1l7267.521Danio_rerio
ENSXMAG00000006196pabpn110095.726ENSDARG00000045373pabpn110095.726Danio_rerio
ENSXMAG00000006196pabpn18681.643ENSDNOG00000023682PABPN18668.302Dasypus_novemcinctus
ENSXMAG00000006196pabpn18680.676ENSDORG00000028966-8667.547Dipodomys_ordii
ENSXMAG00000006196pabpn15682.707ENSDORG00000023928-8581.967Dipodomys_ordii
ENSXMAG00000006196pabpn19758.547FBgn0005648Pabp28262.703Drosophila_melanogaster
ENSXMAG00000006196pabpn19972.766ENSEBUG00000002322pabpn19972.532Eptatretus_burgeri
ENSXMAG00000006196pabpn18681.643ENSEASG00005011716PABPN18668.302Equus_asinus_asinus
ENSXMAG00000006196pabpn18580.976ENSECAG00000011652PABPN18268.033Equus_caballus
ENSXMAG00000006196pabpn18679.227ENSEEUG00000012973-7173.333Erinaceus_europaeus
ENSXMAG00000006196pabpn110093.277ENSELUG00000022654pabpn110090.756Esox_lucius
ENSXMAG00000006196pabpn18681.643ENSFCAG00000031922PABPN18668.302Felis_catus
ENSXMAG00000006196pabpn17181.065ENSFDAG00000018381BCL2L2-PABPN19478.698Fukomys_damarensis
ENSXMAG00000006196pabpn110095.726ENSFHEG00000007215pabpn110095.726Fundulus_heteroclitus
ENSXMAG00000006196pabpn110090.136ENSGMOG00000003922pabpn110089.456Gadus_morhua
ENSXMAG00000006196pabpn18382.828ENSGALG00000052930-6182.464Gallus_gallus
ENSXMAG00000006196pabpn110099.573ENSGAFG00000017099pabpn110099.573Gambusia_affinis
ENSXMAG00000006196pabpn110093.878ENSGACG00000002167pabpn110093.878Gasterosteus_aculeatus
ENSXMAG00000006196pabpn18968.900ENSGGOG00000039675-9163.485Gorilla_gorilla
ENSXMAG00000006196pabpn19975.214ENSGGOG00000022683-8473.932Gorilla_gorilla
ENSXMAG00000006196pabpn19465.957ENSGGOG00000025919-9162.598Gorilla_gorilla
ENSXMAG00000006196pabpn110097.436ENSHBUG00000019523pabpn110097.436Haplochromis_burtoni
ENSXMAG00000006196pabpn17162.130ENSHGLG00000009842-9362.130Heterocephalus_glaber_female
ENSXMAG00000006196pabpn18769.378ENSHGLG00000018588-7069.378Heterocephalus_glaber_female
ENSXMAG00000006196pabpn18681.159ENSHGLG00000002927-9191.034Heterocephalus_glaber_female
ENSXMAG00000006196pabpn18769.378ENSHGLG00100015565-8762.000Heterocephalus_glaber_male
ENSXMAG00000006196pabpn19470.721ENSHGLG00100006673-9191.034Heterocephalus_glaber_male
ENSXMAG00000006196pabpn17168.391ENSHGLG00100018935-9470.930Heterocephalus_glaber_male
ENSXMAG00000006196pabpn110096.154ENSHCOG00000004655pabpn110096.154Hippocampus_comes
ENSXMAG00000006196pabpn110096.154ENSIPUG00000008085PABPN110096.154Ictalurus_punctatus
ENSXMAG00000006196pabpn110088.034ENSIPUG00000000180-9986.752Ictalurus_punctatus
ENSXMAG00000006196pabpn17181.065ENSSTOG00000029847BCL2L2-PABPN19478.698Ictidomys_tridecemlineatus
ENSXMAG00000006196pabpn17181.065ENSJJAG00000023507Gm205219478.698Jaculus_jaculus
ENSXMAG00000006196pabpn110097.447ENSKMAG00000018748pabpn110097.447Kryptolebias_marmoratus
ENSXMAG00000006196pabpn110098.291ENSLBEG00000027266pabpn110098.291Labrus_bergylta
ENSXMAG00000006196pabpn17685.556ENSLACG00000000646pabpn19176.526Latimeria_chalumnae
ENSXMAG00000006196pabpn19066.512ENSLOCG00000004694pabpn1l9963.256Lepisosteus_oculatus
ENSXMAG00000006196pabpn110088.851ENSLOCG00000000796pabpn110087.797Lepisosteus_oculatus
ENSXMAG00000006196pabpn16581.579ENSLAFG00000031227-10078.431Loxodonta_africana
ENSXMAG00000006196pabpn16173.427ENSMFAG00000031355-9972.028Macaca_fascicularis
ENSXMAG00000006196pabpn19971.795ENSMFAG00000032183BCL2L2-PABPN19478.698Macaca_fascicularis
ENSXMAG00000006196pabpn18667.476ENSMMUG00000048382-6966.190Macaca_mulatta
ENSXMAG00000006196pabpn19971.795ENSMMUG00000014747BCL2L2-PABPN110078.378Macaca_mulatta
ENSXMAG00000006196pabpn17968.085ENSMNEG00000035750-9972.028Macaca_nemestrina
ENSXMAG00000006196pabpn19975.214ENSMNEG00000045065BCL2L2-PABPN18473.932Macaca_nemestrina
ENSXMAG00000006196pabpn19971.795ENSMLEG00000043862BCL2L2-PABPN19478.698Mandrillus_leucophaeus
ENSXMAG00000006196pabpn17265.476ENSMLEG00000034623-9969.930Mandrillus_leucophaeus
ENSXMAG00000006196pabpn110097.279ENSMAMG00000007979pabpn110097.279Mastacembelus_armatus
ENSXMAG00000006196pabpn110095.238ENSMZEG00005011904pabpn110095.238Maylandia_zebra
ENSXMAG00000006196pabpn19971.795ENSMAUG00000007383Gm205218768.441Mesocricetus_auratus
ENSXMAG00000006196pabpn19975.745ENSMICG00000010002BCL2L2-PABPN18474.684Microcebus_murinus
ENSXMAG00000006196pabpn19971.368ENSMOCG00000018557Gm205218891.034Microtus_ochrogaster
ENSXMAG00000006196pabpn110097.863ENSMMOG00000005405pabpn110097.863Mola_mola
ENSXMAG00000006196pabpn18580.882ENSMODG00000004535-8567.557Monodelphis_domestica
ENSXMAG00000006196pabpn110097.279ENSMALG00000019612pabpn110097.279Monopterus_albus
ENSXMAG00000006196pabpn19971.368MGP_CAROLIEiJ_G0019276Gm205217069.658Mus_caroli
ENSXMAG00000006196pabpn18680.676MGP_CAROLIEiJ_G0019277Pabpn18891.034Mus_caroli
ENSXMAG00000006196pabpn18681.159ENSMUSG00000022194Pabpn18891.034Mus_musculus
ENSXMAG00000006196pabpn19971.795ENSMUSG00000092232Gm205217070.085Mus_musculus
ENSXMAG00000006196pabpn18681.159MGP_PahariEiJ_G0030295Pabpn110095.238Mus_pahari
ENSXMAG00000006196pabpn19971.795MGP_PahariEiJ_G0030294Gm205217070.085Mus_pahari
ENSXMAG00000006196pabpn18681.159MGP_SPRETEiJ_G0020166Pabpn18891.034Mus_spretus
ENSXMAG00000006196pabpn19971.795MGP_SPRETEiJ_G0020165Gm205217070.085Mus_spretus
ENSXMAG00000006196pabpn16680.892ENSMPUG00000006775-8780.272Mustela_putorius_furo
ENSXMAG00000006196pabpn18878.673ENSMLUG00000012452-6976.777Myotis_lucifugus
ENSXMAG00000006196pabpn18182.199ENSMLUG00000003800-10080.105Myotis_lucifugus
ENSXMAG00000006196pabpn18480.402ENSMLUG00000028677-8570.886Myotis_lucifugus
ENSXMAG00000006196pabpn19972.222ENSNGAG00000019529Gm205217070.513Nannospalax_galili
ENSXMAG00000006196pabpn110094.898ENSNBRG00000023955pabpn110097.191Neolamprologus_brichardi
ENSXMAG00000006196pabpn16459.333ENSNLEG00000035292-9958.667Nomascus_leucogenys
ENSXMAG00000006196pabpn18668.599ENSNLEG00000030598-7768.571Nomascus_leucogenys
ENSXMAG00000006196pabpn19971.795ENSNLEG00000015007-7479.524Nomascus_leucogenys
ENSXMAG00000006196pabpn17671.667ENSODEG00000011555-8968.639Octodon_degus
ENSXMAG00000006196pabpn18673.171ENSODEG00000003739-8863.281Octodon_degus
ENSXMAG00000006196pabpn19971.368ENSODEG00000002083BCL2L2-PABPN16879.048Octodon_degus
ENSXMAG00000006196pabpn110094.898ENSONIG00000008112pabpn110094.898Oreochromis_niloticus
ENSXMAG00000006196pabpn16383.784ENSOANG00000009218-10079.730Ornithorhynchus_anatinus
ENSXMAG00000006196pabpn18681.159ENSOCUG00000016174PABPN19568.182Oryctolagus_cuniculus
ENSXMAG00000006196pabpn110097.279ENSORLG00000027900pabpn110097.279Oryzias_latipes
ENSXMAG00000006196pabpn110097.279ENSORLG00020004681pabpn110097.279Oryzias_latipes_hni
ENSXMAG00000006196pabpn110097.863ENSORLG00015000018pabpn110097.863Oryzias_latipes_hsok
ENSXMAG00000006196pabpn110095.238ENSOMEG00000016618pabpn110095.238Oryzias_melastigma
ENSXMAG00000006196pabpn18681.643ENSOGAG00000008710PABPN18668.302Otolemur_garnettii
ENSXMAG00000006196pabpn19971.795ENSOARG00000019336BCL2L2-PABPN16470.085Ovis_aries
ENSXMAG00000006196pabpn19971.795ENSPPAG00000028984BCL2L2-PABPN18780.272Pan_paniscus
ENSXMAG00000006196pabpn17166.467ENSPPAG00000039421-9365.269Pan_paniscus
ENSXMAG00000006196pabpn18681.643ENSPPRG00000010567PABPN18668.302Panthera_pardus
ENSXMAG00000006196pabpn17181.065ENSPTIG00000001063BCL2L2-PABPN19478.698Panthera_tigris_altaica
ENSXMAG00000006196pabpn19975.214ENSPTRG00000006167BCL2L28473.932Pan_troglodytes
ENSXMAG00000006196pabpn110062.553ENSPTRG00000047273-9359.289Pan_troglodytes
ENSXMAG00000006196pabpn18468.844ENSPANG00000023326-9972.028Papio_anubis
ENSXMAG00000006196pabpn19975.214ENSPANG00000021100BCL2L2-PABPN18473.932Papio_anubis
ENSXMAG00000006196pabpn110091.880ENSPKIG00000018052pabpn110091.026Paramormyrops_kingsleyae
ENSXMAG00000006196pabpn16970.807ENSPKIG00000008340pabpn1l7471.812Paramormyrops_kingsleyae
ENSXMAG00000006196pabpn110094.218ENSPKIG00000008144-10093.197Paramormyrops_kingsleyae
ENSXMAG00000006196pabpn15875.000ENSPSIG00000011959-7885.047Pelodiscus_sinensis
ENSXMAG00000006196pabpn19597.748ENSPMGG00000022027pabpn110089.796Periophthalmus_magnuspinnatus
ENSXMAG00000006196pabpn19971.795ENSPEMG00000008332Gm205218891.034Peromyscus_maniculatus_bairdii
ENSXMAG00000006196pabpn17875.269ENSPMAG00000006212pabpn17775.789Petromyzon_marinus
ENSXMAG00000006196pabpn18681.643ENSPCIG00000027751-8667.925Phascolarctos_cinereus
ENSXMAG00000006196pabpn110099.320ENSPFOG00000010351pabpn110099.320Poecilia_formosa
ENSXMAG00000006196pabpn110099.320ENSPLAG00000022696pabpn110099.320Poecilia_latipinna
ENSXMAG00000006196pabpn110099.145ENSPMEG00000020856pabpn110099.145Poecilia_mexicana
ENSXMAG00000006196pabpn110099.573ENSPREG00000011278pabpn110099.573Poecilia_reticulata
ENSXMAG00000006196pabpn18181.538ENSPPYG00000005663PABPN18668.313Pongo_abelii
ENSXMAG00000006196pabpn17968.394ENSPCAG00000005902PABPN18356.911Procavia_capensis
ENSXMAG00000006196pabpn19975.745ENSPCOG00000028047BCL2L2-PABPN18474.684Propithecus_coquereli
ENSXMAG00000006196pabpn18880.000ENSPVAG00000005270PABPN17967.490Pteropus_vampyrus
ENSXMAG00000006196pabpn110097.436ENSPNYG00000013182pabpn110097.436Pundamilia_nyererei
ENSXMAG00000006196pabpn18860.766ENSPNAG00000021666pabpn1l7871.069Pygocentrus_nattereri
ENSXMAG00000006196pabpn110096.581ENSPNAG00000023526pabpn110096.581Pygocentrus_nattereri
ENSXMAG00000006196pabpn18681.159ENSRNOG00000042195Pabpn18568.441Rattus_norvegicus
ENSXMAG00000006196pabpn18970.892ENSRBIG00000039547-8264.444Rhinopithecus_bieti
ENSXMAG00000006196pabpn18870.476ENSRBIG00000042811-9564.912Rhinopithecus_bieti
ENSXMAG00000006196pabpn19471.171ENSRBIG00000040762BCL2L2-PABPN16570.283Rhinopithecus_bieti
ENSXMAG00000006196pabpn19466.222ENSRROG00000040409-8264.889Rhinopithecus_roxellana
ENSXMAG00000006196pabpn18866.981ENSRROG00000036409-7062.174Rhinopithecus_roxellana
ENSXMAG00000006196pabpn19471.171ENSRROG00000045535BCL2L2-PABPN19478.698Rhinopithecus_roxellana
ENSXMAG00000006196pabpn19968.016ENSSBOG00000026930BCL2L2-PABPN18780.272Saimiri_boliviensis_boliviensis
ENSXMAG00000006196pabpn19961.411ENSSHAG00000007707-9956.067Sarcophilus_harrisii
ENSXMAG00000006196pabpn18183.246ENSSHAG00000014841-8780.628Sarcophilus_harrisii
ENSXMAG00000006196pabpn16173.944ENSSFOG00015015833pabpn1l6774.306Scleropages_formosus
ENSXMAG00000006196pabpn110088.936ENSSFOG00015012565pabpn110087.660Scleropages_formosus
ENSXMAG00000006196pabpn110096.154ENSSFOG00015014718pabpn110096.154Scleropages_formosus
ENSXMAG00000006196pabpn110097.863ENSSMAG00000020157pabpn110097.863Scophthalmus_maximus
ENSXMAG00000006196pabpn110097.959ENSSDUG00000020582pabpn110097.959Seriola_dumerili
ENSXMAG00000006196pabpn110098.291ENSSLDG00000007118pabpn110098.291Seriola_lalandi_dorsalis
ENSXMAG00000006196pabpn17185.207ENSSPUG00000018308-9482.249Sphenodon_punctatus
ENSXMAG00000006196pabpn110096.596ENSSPAG00000021658pabpn110096.596Stegastes_partitus
ENSXMAG00000006196pabpn19971.795ENSSSCG00000002023PABPN18668.302Sus_scrofa
ENSXMAG00000006196pabpn19262.385ENSSSCG00000034805-7958.019Sus_scrofa
ENSXMAG00000006196pabpn110096.581ENSTRUG00000023664pabpn110096.581Takifugu_rubripes
ENSXMAG00000006196pabpn19292.166ENSTNIG00000005369pabpn19094.898Tetraodon_nigroviridis
ENSXMAG00000006196pabpn18681.643ENSUAMG00000024460PABPN16879.524Ursus_americanus
ENSXMAG00000006196pabpn19971.795ENSUMAG00000014288BCL2L2-PABPN17070.085Ursus_maritimus
ENSXMAG00000006196pabpn19971.795ENSVVUG00000019912BCL2L2-PABPN17680.000Vulpes_vulpes
ENSXMAG00000006196pabpn18483.333ENSXETG00000014597pabpn17381.193Xenopus_tropicalis
ENSXMAG00000006196pabpn17588.000ENSXCOG00000005158pabpn19888.000Xiphophorus_couchianus

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