EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000006495 (Gene tree)
Gene ID: 102234017
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 18584 bases
Position: chr21:17516734-17535317
Accession: 102234017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000033613	RRM_1	PF00076.22	1.2e-14	1	2
ENSXMAP00000033613	RRM_1	PF00076.22	1.2e-14	2	2
ENSXMAP00000006534	RRM_1	PF00076.22	1.4e-14	1	2
ENSXMAP00000006534	RRM_1	PF00076.22	1.4e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000006542	-	4672	XM_005803668	ENSXMAP00000006534	508 (aa)	XP_005803725	M3ZWE0
ENSXMAT00000027111	-	4603	XM_023325814	ENSXMAP00000033613	485 (aa)	XP_023181582	-

Gene Model

Click here to download ENSXMAG00000006495's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000006495's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000006495	rnpc3	97	52.883	ENSG00000185946	RNPC3	96	54.887	Homo_sapiens
ENSXMAG00000006495	rnpc3	100	79.804	ENSAPOG00000017371	rnpc3	100	79.648	Acanthochromis_polyacanthus
ENSXMAG00000006495	rnpc3	97	53.373	ENSAMEG00000001694	RNPC3	95	53.162	Ailuropoda_melanoleuca
ENSXMAG00000006495	rnpc3	99	74.656	ENSACIG00000021043	rnpc3	99	74.606	Amphilophus_citrinellus
ENSXMAG00000006495	rnpc3	100	80.626	ENSAOCG00000014052	rnpc3	98	79.804	Amphiprion_ocellaris
ENSXMAG00000006495	rnpc3	100	80.431	ENSAPEG00000008739	rnpc3	98	79.608	Amphiprion_percula
ENSXMAG00000006495	rnpc3	100	77.713	ENSATEG00000021263	rnpc3	100	77.713	Anabas_testudineus
ENSXMAG00000006495	rnpc3	89	54.348	ENSAPLG00000015605	RNPC3	99	54.783	Anas_platyrhynchos
ENSXMAG00000006495	rnpc3	96	54.175	ENSACAG00000002029	RNPC3	96	51.697	Anolis_carolinensis
ENSXMAG00000006495	rnpc3	97	52.778	ENSANAG00000019950	RNPC3	96	52.778	Aotus_nancymaae
ENSXMAG00000006495	rnpc3	99	78.501	ENSACLG00000014702	rnpc3	99	78.501	Astatotilapia_calliptera
ENSXMAG00000006495	rnpc3	99	61.404	ENSAMXG00000033372	rnpc3	99	61.404	Astyanax_mexicanus
ENSXMAG00000006495	rnpc3	97	53.479	ENSBTAG00000019091	RNPC3	95	53.507	Bos_taurus
ENSXMAG00000006495	rnpc3	97	52.590	ENSCJAG00000035686	RNPC3	95	52.087	Callithrix_jacchus
ENSXMAG00000006495	rnpc3	97	53.479	ENSCAFG00000019972	RNPC3	96	53.267	Canis_familiaris
ENSXMAG00000006495	rnpc3	97	53.479	ENSCAFG00020011300	RNPC3	96	53.267	Canis_lupus_dingo
ENSXMAG00000006495	rnpc3	97	54.059	ENSCHIG00000020361	RNPC3	95	53.400	Capra_hircus
ENSXMAG00000006495	rnpc3	97	53.000	ENSTSYG00000030256	RNPC3	96	52.976	Carlito_syrichta
ENSXMAG00000006495	rnpc3	86	44.595	ENSCAPG00000013600	RNPC3	97	44.570	Cavia_aperea
ENSXMAG00000006495	rnpc3	97	52.600	ENSCPOG00000031638	RNPC3	95	52.695	Cavia_porcellus
ENSXMAG00000006495	rnpc3	97	52.579	ENSCCAG00000024301	RNPC3	96	52.579	Cebus_capucinus
ENSXMAG00000006495	rnpc3	97	40.882	ENSCATG00000035930	-	95	39.279	Cercocebus_atys
ENSXMAG00000006495	rnpc3	97	52.778	ENSCATG00000002086	RNPC3	96	52.964	Cercocebus_atys
ENSXMAG00000006495	rnpc3	97	50.388	ENSCLAG00000005169	RNPC3	96	50.696	Chinchilla_lanigera
ENSXMAG00000006495	rnpc3	97	53.187	ENSCSAG00000001519	RNPC3	96	52.964	Chlorocebus_sabaeus
ENSXMAG00000006495	rnpc3	97	55.489	ENSCPBG00000028311	RNPC3	95	55.888	Chrysemys_picta_bellii
ENSXMAG00000006495	rnpc3	94	36.345	ENSCSAVG00000002800	-	76	53.488	Ciona_savignyi
ENSXMAG00000006495	rnpc3	97	52.789	ENSCANG00000031444	RNPC3	96	52.569	Colobus_angolensis_palliatus
ENSXMAG00000006495	rnpc3	96	53.815	ENSCGRG00001019276	Rnpc3	95	53.815	Cricetulus_griseus_chok1gshd
ENSXMAG00000006495	rnpc3	89	51.739	ENSCGRG00000000053	Rnpc3	99	51.739	Cricetulus_griseus_crigri
ENSXMAG00000006495	rnpc3	99	72.925	ENSCSEG00000013475	rnpc3	99	73.123	Cynoglossus_semilaevis
ENSXMAG00000006495	rnpc3	100	86.328	ENSCVAG00000002645	rnpc3	100	85.992	Cyprinodon_variegatus
ENSXMAG00000006495	rnpc3	99	63.583	ENSDARG00000011247	rnpc3	99	64.648	Danio_rerio
ENSXMAG00000006495	rnpc3	97	53.280	ENSDNOG00000047498	-	95	53.493	Dasypus_novemcinctus
ENSXMAG00000006495	rnpc3	97	52.684	ENSDNOG00000044555	-	95	52.894	Dasypus_novemcinctus
ENSXMAG00000006495	rnpc3	98	52.079	ENSDORG00000027343	Rnpc3	96	52.079	Dipodomys_ordii
ENSXMAG00000006495	rnpc3	96	49.609	ENSEBUG00000002068	rnpc3	96	49.219	Eptatretus_burgeri
ENSXMAG00000006495	rnpc3	97	54.274	ENSEASG00005015957	RNPC3	96	54.043	Equus_asinus_asinus
ENSXMAG00000006495	rnpc3	97	54.473	ENSECAG00000021148	RNPC3	95	54.473	Equus_caballus
ENSXMAG00000006495	rnpc3	99	66.857	ENSELUG00000002264	rnpc3	99	65.143	Esox_lucius
ENSXMAG00000006495	rnpc3	98	53.557	ENSFCAG00000024312	RNPC3	96	53.571	Felis_catus
ENSXMAG00000006495	rnpc3	89	54.803	ENSFALG00000002580	RNPC3	99	54.803	Ficedula_albicollis
ENSXMAG00000006495	rnpc3	97	53.000	ENSFDAG00000019948	RNPC3	95	53.400	Fukomys_damarensis
ENSXMAG00000006495	rnpc3	100	77.953	ENSFHEG00000020647	rnpc3	100	77.362	Fundulus_heteroclitus
ENSXMAG00000006495	rnpc3	100	66.602	ENSGMOG00000019213	rnpc3	99	65.949	Gadus_morhua
ENSXMAG00000006495	rnpc3	97	55.511	ENSGALG00000005162	RNPC3	88	55.622	Gallus_gallus
ENSXMAG00000006495	rnpc3	100	96.260	ENSGAFG00000017236	rnpc3	100	96.260	Gambusia_affinis
ENSXMAG00000006495	rnpc3	100	76.117	ENSGACG00000002048	rnpc3	99	75.922	Gasterosteus_aculeatus
ENSXMAG00000006495	rnpc3	97	56.487	ENSGAGG00000008438	RNPC3	94	56.436	Gopherus_agassizii
ENSXMAG00000006495	rnpc3	97	47.379	ENSGGOG00000026201	-	95	46.976	Gorilla_gorilla
ENSXMAG00000006495	rnpc3	83	77.083	ENSHBUG00000015966	rnpc3	85	77.083	Haplochromis_burtoni
ENSXMAG00000006495	rnpc3	97	52.183	ENSHGLG00000001708	RNPC3	95	52.590	Heterocephalus_glaber_female
ENSXMAG00000006495	rnpc3	97	52.183	ENSHGLG00100003005	RNPC3	95	52.590	Heterocephalus_glaber_male
ENSXMAG00000006495	rnpc3	99	74.067	ENSHCOG00000017135	rnpc3	100	74.067	Hippocampus_comes
ENSXMAG00000006495	rnpc3	99	61.373	ENSIPUG00000002916	rnpc3	99	62.549	Ictalurus_punctatus
ENSXMAG00000006495	rnpc3	97	52.485	ENSSTOG00000025020	RNPC3	95	52.268	Ictidomys_tridecemlineatus
ENSXMAG00000006495	rnpc3	96	52.505	ENSJJAG00000010203	Rnpc3	96	52.475	Jaculus_jaculus
ENSXMAG00000006495	rnpc3	99	80.198	ENSKMAG00000017358	rnpc3	99	79.406	Kryptolebias_marmoratus
ENSXMAG00000006495	rnpc3	100	77.647	ENSLBEG00000024901	rnpc3	98	77.647	Labrus_bergylta
ENSXMAG00000006495	rnpc3	99	55.382	ENSLACG00000005720	RNPC3	92	53.606	Latimeria_chalumnae
ENSXMAG00000006495	rnpc3	99	60.707	ENSLOCG00000007986	rnpc3	97	59.200	Lepisosteus_oculatus
ENSXMAG00000006495	rnpc3	97	53.280	ENSLAFG00000032342	RNPC3	95	53.493	Loxodonta_africana
ENSXMAG00000006495	rnpc3	97	39.479	ENSMFAG00000002917	-	95	39.000	Macaca_fascicularis
ENSXMAG00000006495	rnpc3	97	52.778	ENSMFAG00000002004	RNPC3	96	52.964	Macaca_fascicularis
ENSXMAG00000006495	rnpc3	97	52.579	ENSMMUG00000018039	RNPC3	96	52.767	Macaca_mulatta
ENSXMAG00000006495	rnpc3	84	48.402	ENSMMUG00000002098	-	85	48.402	Macaca_mulatta
ENSXMAG00000006495	rnpc3	97	49.802	ENSMNEG00000033950	RNPC3	95	50.000	Macaca_nemestrina
ENSXMAG00000006495	rnpc3	97	38.788	ENSMNEG00000029209	-	95	38.508	Macaca_nemestrina
ENSXMAG00000006495	rnpc3	97	41.331	ENSMLEG00000034644	-	95	39.961	Mandrillus_leucophaeus
ENSXMAG00000006495	rnpc3	97	52.778	ENSMLEG00000033628	RNPC3	96	52.964	Mandrillus_leucophaeus
ENSXMAG00000006495	rnpc3	100	70.392	ENSMAMG00000007496	rnpc3	100	70.392	Mastacembelus_armatus
ENSXMAG00000006495	rnpc3	99	78.058	ENSMZEG00005020233	rnpc3	99	77.583	Maylandia_zebra
ENSXMAG00000006495	rnpc3	89	53.463	ENSMGAG00000006381	RNPC3	99	54.783	Meleagris_gallopavo
ENSXMAG00000006495	rnpc3	97	54.309	ENSMAUG00000001358	Rnpc3	96	54.076	Mesocricetus_auratus
ENSXMAG00000006495	rnpc3	97	52.800	ENSMICG00000029591	RNPC3	95	52.988	Microcebus_murinus
ENSXMAG00000006495	rnpc3	97	54.200	ENSMOCG00000013423	Rnpc3	96	53.968	Microtus_ochrogaster
ENSXMAG00000006495	rnpc3	100	71.513	ENSMMOG00000005309	rnpc3	100	68.173	Mola_mola
ENSXMAG00000006495	rnpc3	97	53.414	ENSMODG00000002946	RNPC3	95	53.213	Monodelphis_domestica
ENSXMAG00000006495	rnpc3	99	72.549	ENSMALG00000015471	rnpc3	100	71.680	Monopterus_albus
ENSXMAG00000006495	rnpc3	97	53.785	MGP_CAROLIEiJ_G0025555	Rnpc3	96	53.507	Mus_caroli
ENSXMAG00000006495	rnpc3	97	53.373	ENSMUSG00000027981	Rnpc3	99	51.374	Mus_musculus
ENSXMAG00000006495	rnpc3	98	53.150	MGP_PahariEiJ_G0027001	Rnpc3	97	52.871	Mus_pahari
ENSXMAG00000006495	rnpc3	97	50.577	MGP_SPRETEiJ_G0026505	Rnpc3	96	53.094	Mus_spretus
ENSXMAG00000006495	rnpc3	97	53.414	ENSMPUG00000007349	RNPC3	96	53.187	Mustela_putorius_furo
ENSXMAG00000006495	rnpc3	97	53.831	ENSMLUG00000028743	RNPC3	96	53.386	Myotis_lucifugus
ENSXMAG00000006495	rnpc3	97	53.507	ENSNGAG00000010939	Rnpc3	95	53.507	Nannospalax_galili
ENSXMAG00000006495	rnpc3	99	78.698	ENSNBRG00000012196	rnpc3	96	78.698	Neolamprologus_brichardi
ENSXMAG00000006495	rnpc3	97	52.883	ENSNLEG00000012013	RNPC3	96	53.069	Nomascus_leucogenys
ENSXMAG00000006495	rnpc3	97	52.419	ENSODEG00000007612	RNPC3	96	52.200	Octodon_degus
ENSXMAG00000006495	rnpc3	99	79.331	ENSONIG00000004770	rnpc3	100	79.150	Oreochromis_niloticus
ENSXMAG00000006495	rnpc3	92	54.237	ENSOANG00000008220	RNPC3	99	54.237	Ornithorhynchus_anatinus
ENSXMAG00000006495	rnpc3	97	53.693	ENSOCUG00000004016	RNPC3	95	53.586	Oryctolagus_cuniculus
ENSXMAG00000006495	rnpc3	100	77.059	ENSORLG00000005694	rnpc3	100	76.863	Oryzias_latipes
ENSXMAG00000006495	rnpc3	100	77.255	ENSORLG00020005513	rnpc3	100	77.255	Oryzias_latipes_hni
ENSXMAG00000006495	rnpc3	100	77.059	ENSORLG00015002179	rnpc3	100	76.863	Oryzias_latipes_hsok
ENSXMAG00000006495	rnpc3	100	77.843	ENSOMEG00000017737	rnpc3	100	77.843	Oryzias_melastigma
ENSXMAG00000006495	rnpc3	98	53.663	ENSOGAG00000026182	RNPC3	96	53.663	Otolemur_garnettii
ENSXMAG00000006495	rnpc3	97	54.059	ENSOARG00000018719	RNPC3	95	53.400	Ovis_aries
ENSXMAG00000006495	rnpc3	97	47.177	ENSPPAG00000030278	-	97	46.680	Pan_paniscus
ENSXMAG00000006495	rnpc3	97	52.673	ENSPPAG00000037459	RNPC3	96	52.860	Pan_paniscus
ENSXMAG00000006495	rnpc3	98	53.557	ENSPPRG00000020246	RNPC3	96	53.571	Panthera_pardus
ENSXMAG00000006495	rnpc3	98	53.557	ENSPTIG00000009887	RNPC3	97	53.571	Panthera_tigris_altaica
ENSXMAG00000006495	rnpc3	97	52.579	ENSPTRG00000033902	RNPC3	96	52.767	Pan_troglodytes
ENSXMAG00000006495	rnpc3	97	46.774	ENSPTRG00000044227	-	97	46.573	Pan_troglodytes
ENSXMAG00000006495	rnpc3	97	52.883	ENSPANG00000012137	RNPC3	96	53.069	Papio_anubis
ENSXMAG00000006495	rnpc3	97	41.897	ENSPANG00000029957	-	96	40.358	Papio_anubis
ENSXMAG00000006495	rnpc3	99	61.641	ENSPKIG00000008828	rnpc3	99	60.271	Paramormyrops_kingsleyae
ENSXMAG00000006495	rnpc3	65	53.134	ENSPSIG00000007396	RNPC3	99	54.627	Pelodiscus_sinensis
ENSXMAG00000006495	rnpc3	97	65.331	ENSPMGG00000011742	rnpc3	98	64.930	Periophthalmus_magnuspinnatus
ENSXMAG00000006495	rnpc3	89	51.739	ENSPEMG00000020112	Rnpc3	99	51.739	Peromyscus_maniculatus_bairdii
ENSXMAG00000006495	rnpc3	98	39.469	ENSPMAG00000003778	rnpc3	97	45.143	Petromyzon_marinus
ENSXMAG00000006495	rnpc3	97	54.016	ENSPCIG00000004415	-	95	53.012	Phascolarctos_cinereus
ENSXMAG00000006495	rnpc3	100	95.678	ENSPFOG00000009895	rnpc3	100	95.678	Poecilia_formosa
ENSXMAG00000006495	rnpc3	100	94.892	ENSPLAG00000012023	rnpc3	100	94.892	Poecilia_latipinna
ENSXMAG00000006495	rnpc3	100	95.874	ENSPMEG00000003663	rnpc3	100	95.874	Poecilia_mexicana
ENSXMAG00000006495	rnpc3	100	95.276	ENSPREG00000010206	rnpc3	100	95.276	Poecilia_reticulata
ENSXMAG00000006495	rnpc3	81	48.936	ENSPPYG00000001102	RNPC3	95	49.176	Pongo_abelii
ENSXMAG00000006495	rnpc3	99	78.304	ENSPNYG00000020603	rnpc3	99	78.304	Pundamilia_nyererei
ENSXMAG00000006495	rnpc3	97	54.000	ENSRNOG00000017310	Rnpc3	95	54.000	Rattus_norvegicus
ENSXMAG00000006495	rnpc3	97	48.911	ENSRBIG00000043897	RNPC3	95	49.112	Rhinopithecus_bieti
ENSXMAG00000006495	rnpc3	97	52.778	ENSRROG00000032334	RNPC3	96	52.964	Rhinopithecus_roxellana
ENSXMAG00000006495	rnpc3	98	52.465	ENSSBOG00000024473	RNPC3	96	52.684	Saimiri_boliviensis_boliviensis
ENSXMAG00000006495	rnpc3	97	53.200	ENSSHAG00000011859	RNPC3	95	52.590	Sarcophilus_harrisii
ENSXMAG00000006495	rnpc3	97	67.203	ENSSFOG00015013055	rnpc3	99	67.203	Scleropages_formosus
ENSXMAG00000006495	rnpc3	100	76.505	ENSSMAG00000020346	rnpc3	100	76.117	Scophthalmus_maximus
ENSXMAG00000006495	rnpc3	100	78.363	ENSSDUG00000006600	rnpc3	100	78.363	Seriola_dumerili
ENSXMAG00000006495	rnpc3	100	78.363	ENSSLDG00000007979	rnpc3	100	78.363	Seriola_lalandi_dorsalis
ENSXMAG00000006495	rnpc3	97	51.703	ENSSPUG00000003872	-	92	50.301	Sphenodon_punctatus
ENSXMAG00000006495	rnpc3	95	55.912	ENSSPUG00000008539	-	92	54.509	Sphenodon_punctatus
ENSXMAG00000006495	rnpc3	100	79.921	ENSSPAG00000005633	rnpc3	100	78.346	Stegastes_partitus
ENSXMAG00000006495	rnpc3	97	51.550	ENSSSCG00000037254	RNPC3	95	52.988	Sus_scrofa
ENSXMAG00000006495	rnpc3	89	55.142	ENSTGUG00000004795	-	99	54.705	Taeniopygia_guttata
ENSXMAG00000006495	rnpc3	99	73.581	ENSTNIG00000018963	rnpc3	100	72.798	Tetraodon_nigroviridis
ENSXMAG00000006495	rnpc3	97	53.175	ENSUMAG00000007775	RNPC3	97	52.964	Ursus_maritimus
ENSXMAG00000006495	rnpc3	97	53.479	ENSVVUG00000000331	RNPC3	96	53.267	Vulpes_vulpes
ENSXMAG00000006495	rnpc3	98	43.787	ENSXETG00000025027	rnpc3	97	43.651	Xenopus_tropicalis
ENSXMAG00000006495	rnpc3	100	95.376	ENSXCOG00000005013	rnpc3	100	95.376	Xiphophorus_couchianus