EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000006538 (Gene tree)
Gene ID: 102233557
Gene Symbol: tomm20a
Alias: arid4b|ch1073-321c8.1|wu:fk47b11
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 48974 bases
Position: chr22:8083182-8132155
Accession: 102233557
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000039813	Tudor-knot	PF11717.8	2.7e-10	1	1
ENSXMAP00000025100	Tudor-knot	PF11717.8	2.8e-10	1	1
ENSXMAP00000006567	Tudor-knot	PF11717.8	2.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000023076	-	7525	-	ENSXMAP00000035070	1221 (aa)	-	-
ENSXMAT00000042116	-	7622	XM_014469338	ENSXMAP00000039813	1313 (aa)	XP_014324824	UPI0006D903D8
ENSXMAT00000035644	-	7708	-	ENSXMAP00000025100	1282 (aa)	-	-
ENSXMAT00000006575	-	7541	XM_023327153	ENSXMAP00000006567	1286 (aa)	XP_023182921	M3ZWH3

Gene Model

Click here to download ENSXMAG00000006538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000006538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000006538	tomm20a	55	42.021	ENSG00000054267	ARID4B	85	75.485	Homo_sapiens
ENSXMAG00000006538	tomm20a	100	85.692	ENSAPOG00000010823	tomm20a	100	86.305	Acanthochromis_polyacanthus
ENSXMAG00000006538	tomm20a	93	91.962	ENSACIG00000006313	tomm20a	100	91.962	Amphilophus_citrinellus
ENSXMAG00000006538	tomm20a	100	85.769	ENSAOCG00000003330	tomm20a	100	85.922	Amphiprion_ocellaris
ENSXMAG00000006538	tomm20a	100	85.692	ENSAPEG00000024018	tomm20a	100	85.845	Amphiprion_percula
ENSXMAG00000006538	tomm20a	100	83.168	ENSATEG00000014930	tomm20a	100	83.703	Anabas_testudineus
ENSXMAG00000006538	tomm20a	100	50.000	ENSAPLG00000004422	ARID4B	99	49.347	Anas_platyrhynchos
ENSXMAG00000006538	tomm20a	52	61.495	ENSACAG00000001289	ARID4B	99	52.102	Anolis_carolinensis
ENSXMAG00000006538	tomm20a	100	50.908	ENSANAG00000038088	ARID4B	99	50.446	Aotus_nancymaae
ENSXMAG00000006538	tomm20a	93	81.710	ENSACLG00000023521	tomm20a	100	79.572	Astatotilapia_calliptera
ENSXMAG00000006538	tomm20a	87	89.796	ENSAMXG00000003657	tomm20a	90	76.998	Astyanax_mexicanus
ENSXMAG00000006538	tomm20a	100	51.712	ENSBTAG00000000222	ARID4B	99	51.526	Bos_taurus
ENSXMAG00000006538	tomm20a	100	51.656	ENSCJAG00000018055	ARID4B	99	51.418	Callithrix_jacchus
ENSXMAG00000006538	tomm20a	99	50.660	ENSCPOG00000034766	ARID4B	99	50.709	Cavia_porcellus
ENSXMAG00000006538	tomm20a	100	51.351	ENSCATG00000042166	ARID4B	99	51.678	Cercocebus_atys
ENSXMAG00000006538	tomm20a	99	78.295	ENSCSEG00000012928	tomm20a	98	78.244	Cynoglossus_semilaevis
ENSXMAG00000006538	tomm20a	100	88.735	ENSCVAG00000003244	tomm20a	100	87.886	Cyprinodon_variegatus
ENSXMAG00000006538	tomm20a	100	66.692	ENSDARG00000090656	tomm20a	99	65.757	Danio_rerio
ENSXMAG00000006538	tomm20a	90	57.647	ENSETEG00000005596	ARID4B	93	57.176	Echinops_telfairi
ENSXMAG00000006538	tomm20a	55	80.556	ENSEEUG00000005378	ARID4B	76	80.556	Erinaceus_europaeus
ENSXMAG00000006538	tomm20a	64	55.335	ENSELUG00000018441	tomm20a	91	54.111	Esox_lucius
ENSXMAG00000006538	tomm20a	100	88.352	ENSFHEG00000003798	tomm20a	100	88.046	Fundulus_heteroclitus
ENSXMAG00000006538	tomm20a	90	73.518	ENSGMOG00000018747	tomm20a	91	70.753	Gadus_morhua
ENSXMAG00000006538	tomm20a	99	76.529	ENSGACG00000004298	tomm20a	100	77.217	Gasterosteus_aculeatus
ENSXMAG00000006538	tomm20a	100	51.178	ENSGAGG00000020544	ARID4B	97	51.249	Gopherus_agassizii
ENSXMAG00000006538	tomm20a	100	81.951	ENSHBUG00000020369	tomm20a	100	82.488	Haplochromis_burtoni
ENSXMAG00000006538	tomm20a	97	82.826	ENSHCOG00000010376	tomm20a	100	81.739	Hippocampus_comes
ENSXMAG00000006538	tomm20a	100	63.448	ENSIPUG00000014234	arid4b	99	63.346	Ictalurus_punctatus
ENSXMAG00000006538	tomm20a	100	51.230	ENSJJAG00000021368	Arid4b	99	51.223	Jaculus_jaculus
ENSXMAG00000006538	tomm20a	84	92.035	ENSKMAG00000010987	tomm20a	98	92.742	Kryptolebias_marmoratus
ENSXMAG00000006538	tomm20a	100	61.217	ENSLOCG00000015899	tomm20a	99	62.269	Lepisosteus_oculatus
ENSXMAG00000006538	tomm20a	99	51.204	ENSLAFG00000014295	ARID4B	99	51.225	Loxodonta_africana
ENSXMAG00000006538	tomm20a	93	82.619	ENSMAMG00000017134	tomm20a	99	83.044	Mastacembelus_armatus
ENSXMAG00000006538	tomm20a	100	81.797	ENSMZEG00005009879	tomm20a	100	82.335	Maylandia_zebra
ENSXMAG00000006538	tomm20a	93	86.404	ENSMMOG00000000561	tomm20a	94	95.516	Mola_mola
ENSXMAG00000006538	tomm20a	100	51.800	ENSMODG00000008417	ARID4B	99	51.791	Monodelphis_domestica
ENSXMAG00000006538	tomm20a	100	83.871	ENSMALG00000005205	tomm20a	100	84.025	Monopterus_albus
ENSXMAG00000006538	tomm20a	100	51.570	MGP_CAROLIEiJ_G0018236	Arid4b	99	50.808	Mus_caroli
ENSXMAG00000006538	tomm20a	100	51.061	MGP_PahariEiJ_G0019286	Arid4b	99	51.076	Mus_pahari
ENSXMAG00000006538	tomm20a	100	51.022	MGP_SPRETEiJ_G0019094	Arid4b	99	51.070	Mus_spretus
ENSXMAG00000006538	tomm20a	100	51.827	ENSNGAG00000014629	Arid4b	99	51.405	Nannospalax_galili
ENSXMAG00000006538	tomm20a	93	87.972	ENSNBRG00000019684	tomm20a	100	90.094	Neolamprologus_brichardi
ENSXMAG00000006538	tomm20a	100	51.225	ENSODEG00000005373	ARID4B	99	51.808	Octodon_degus
ENSXMAG00000006538	tomm20a	100	78.314	ENSORLG00000012510	tomm20a	100	78.084	Oryzias_latipes
ENSXMAG00000006538	tomm20a	92	85.646	ENSORLG00020013988	tomm20a	100	86.588	Oryzias_latipes_hni
ENSXMAG00000006538	tomm20a	92	86.058	ENSORLG00015022835	tomm20a	100	86.525	Oryzias_latipes_hsok
ENSXMAG00000006538	tomm20a	100	79.231	ENSOMEG00000000521	tomm20a	100	79.231	Oryzias_melastigma
ENSXMAG00000006538	tomm20a	99	52.296	ENSOARG00000003481	ARID4B	97	51.522	Ovis_aries
ENSXMAG00000006538	tomm20a	100	51.754	ENSPPRG00000013739	ARID4B	99	52.116	Panthera_pardus
ENSXMAG00000006538	tomm20a	100	52.511	ENSPTIG00000012520	ARID4B	99	52.141	Panthera_tigris_altaica
ENSXMAG00000006538	tomm20a	57	57.182	ENSPMGG00000001596	tomm20a	89	54.632	Periophthalmus_magnuspinnatus
ENSXMAG00000006538	tomm20a	100	52.526	ENSPCIG00000029756	ARID4B	99	52.112	Phascolarctos_cinereus
ENSXMAG00000006538	tomm20a	100	96.528	ENSPFOG00000019430	tomm20a	100	96.528	Poecilia_formosa
ENSXMAG00000006538	tomm20a	100	96.682	ENSPLAG00000010554	tomm20a	100	96.682	Poecilia_latipinna
ENSXMAG00000006538	tomm20a	100	96.375	ENSPMEG00000003093	tomm20a	100	96.375	Poecilia_mexicana
ENSXMAG00000006538	tomm20a	100	96.517	ENSPREG00000007996	tomm20a	100	96.517	Poecilia_reticulata
ENSXMAG00000006538	tomm20a	92	54.865	ENSPVAG00000015159	ARID4B	99	50.668	Pteropus_vampyrus
ENSXMAG00000006538	tomm20a	99	77.231	ENSPNYG00000013988	tomm20a	100	75.828	Pundamilia_nyererei
ENSXMAG00000006538	tomm20a	100	67.347	ENSPNAG00000000523	tomm20a	92	67.283	Pygocentrus_nattereri
ENSXMAG00000006538	tomm20a	87	46.656	ENSRNOG00000016391	LOC100912163	96	46.128	Rattus_norvegicus
ENSXMAG00000006538	tomm20a	94	70.455	ENSRBIG00000042029	ARID4B	96	49.091	Rhinopithecus_bieti
ENSXMAG00000006538	tomm20a	100	51.385	ENSRROG00000045203	ARID4B	99	51.339	Rhinopithecus_roxellana
ENSXMAG00000006538	tomm20a	54	61.126	ENSSHAG00000015214	ARID4B	99	51.263	Sarcophilus_harrisii
ENSXMAG00000006538	tomm20a	100	60.781	ENSSFOG00015000132	arid4b	99	61.239	Scleropages_formosus
ENSXMAG00000006538	tomm20a	75	50.853	ENSSFOG00015008923	tomm20a	98	49.128	Scleropages_formosus
ENSXMAG00000006538	tomm20a	100	80.691	ENSSMAG00000010430	tomm20a	100	80.090	Scophthalmus_maximus
ENSXMAG00000006538	tomm20a	100	85.353	ENSSDUG00000003019	tomm20a	100	85.276	Seriola_dumerili
ENSXMAG00000006538	tomm20a	100	50.976	ENSSPUG00000015466	ARID4B	97	51.004	Sphenodon_punctatus
ENSXMAG00000006538	tomm20a	100	85.145	ENSSPAG00000007358	tomm20a	100	84.456	Stegastes_partitus
ENSXMAG00000006538	tomm20a	100	52.117	ENSTGUG00000010246	ARID4B	99	51.136	Taeniopygia_guttata
ENSXMAG00000006538	tomm20a	69	69.604	ENSTRUG00000002893	tomm20a	100	67.991	Takifugu_rubripes
ENSXMAG00000006538	tomm20a	70	69.533	ENSTBEG00000003961	ARID4B	62	68.796	Tupaia_belangeri
ENSXMAG00000006538	tomm20a	100	52.723	ENSTTRG00000002228	ARID4B	99	51.034	Tursiops_truncatus
ENSXMAG00000006538	tomm20a	100	48.786	ENSXETG00000024651	arid4b	55	58.669	Xenopus_tropicalis