EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000006739 (Gene tree)
Gene ID: 102233996
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 15962 bases
Position: chr5:9889653-9905614
Accession: 102233996
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000006769	RRM_1	PF00076.22	0.00014	1	1
ENSXMAP00000036125	RRM_1	PF00076.22	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000024709	-	5959	XM_023333095	ENSXMAP00000036125	1627 (aa)	XP_023188863	-
ENSXMAT00000006777	-	4626	-	ENSXMAP00000006769	1541 (aa)	-	M3ZX25

Gene Model

Click here to download ENSXMAG00000006739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000006739's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000006739	tnrc6c2	100	85.030	ENSAOCG00000017648	tnrc6c2	87	84.727	Amphiprion_ocellaris
ENSXMAG00000006739	tnrc6c2	96	86.139	ENSATEG00000003656	tnrc6c2	100	73.924	Anabas_testudineus
ENSXMAG00000006739	tnrc6c2	100	84.326	ENSACLG00000006469	tnrc6c2	88	83.900	Astatotilapia_calliptera
ENSXMAG00000006739	tnrc6c2	100	58.767	ENSAMXG00000009579	tnrc6c2	99	58.424	Astyanax_mexicanus
ENSXMAG00000006739	tnrc6c2	100	58.827	ENSDARG00000103851	tnrc6c2	100	56.973	Danio_rerio
ENSXMAG00000006739	tnrc6c2	100	61.348	ENSELUG00000007206	tnrc6c2	99	60.906	Esox_lucius
ENSXMAG00000006739	tnrc6c2	91	81.173	ENSELUG00000008149	-	88	77.551	Esox_lucius
ENSXMAG00000006739	tnrc6c2	100	92.081	ENSFHEG00000003901	tnrc6c2	100	91.713	Fundulus_heteroclitus
ENSXMAG00000006739	tnrc6c2	100	73.297	ENSGACG00000019401	tnrc6c2	90	73.719	Gasterosteus_aculeatus
ENSXMAG00000006739	tnrc6c2	100	84.326	ENSHBUG00000018310	tnrc6c2	88	83.900	Haplochromis_burtoni
ENSXMAG00000006739	tnrc6c2	100	76.761	ENSHCOG00000017802	tnrc6c2	87	77.016	Hippocampus_comes
ENSXMAG00000006739	tnrc6c2	100	54.134	ENSIPUG00000022767	tnrc6c2	99	52.231	Ictalurus_punctatus
ENSXMAG00000006739	tnrc6c2	100	83.212	ENSMAMG00000001718	tnrc6c2	100	83.152	Mastacembelus_armatus
ENSXMAG00000006739	tnrc6c2	100	84.386	ENSMZEG00005023905	tnrc6c2	88	83.961	Maylandia_zebra
ENSXMAG00000006739	tnrc6c2	100	82.289	ENSMALG00000020932	tnrc6c2	100	82.771	Monopterus_albus
ENSXMAG00000006739	tnrc6c2	96	86.842	ENSNBRG00000000452	tnrc6c2	100	74.367	Neolamprologus_brichardi
ENSXMAG00000006739	tnrc6c2	98	81.921	ENSONIG00000018123	tnrc6c2	100	81.921	Oreochromis_niloticus
ENSXMAG00000006739	tnrc6c2	100	83.007	ENSORLG00000003327	tnrc6c2	87	82.213	Oryzias_latipes
ENSXMAG00000006739	tnrc6c2	100	82.518	ENSORLG00020010730	tnrc6c2	87	81.968	Oryzias_latipes_hni
ENSXMAG00000006739	tnrc6c2	100	82.702	ENSORLG00015009232	tnrc6c2	87	82.396	Oryzias_latipes_hsok
ENSXMAG00000006739	tnrc6c2	100	83.557	ENSOMEG00000017952	tnrc6c2	87	83.191	Oryzias_melastigma
ENSXMAG00000006739	tnrc6c2	95	90.909	ENSPFOG00000011590	tnrc6c2	90	91.022	Poecilia_formosa
ENSXMAG00000006739	tnrc6c2	100	93.698	ENSPLAG00000006992	tnrc6c2	100	93.698	Poecilia_latipinna
ENSXMAG00000006739	tnrc6c2	100	97.604	ENSPMEG00000012946	tnrc6c2	100	95.042	Poecilia_mexicana
ENSXMAG00000006739	tnrc6c2	100	90.152	ENSPREG00000015823	tnrc6c2	100	89.599	Poecilia_reticulata
ENSXMAG00000006739	tnrc6c2	100	83.981	ENSPNYG00000002582	tnrc6c2	100	84.102	Pundamilia_nyererei
ENSXMAG00000006739	tnrc6c2	100	56.836	ENSPNAG00000026838	tnrc6c2	99	58.059	Pygocentrus_nattereri
ENSXMAG00000006739	tnrc6c2	100	80.906	ENSSMAG00000015145	tnrc6c2	100	80.665	Scophthalmus_maximus
ENSXMAG00000006739	tnrc6c2	100	85.064	ENSSDUG00000020741	tnrc6c2	100	84.699	Seriola_dumerili
ENSXMAG00000006739	tnrc6c2	100	84.942	ENSSLDG00000002077	tnrc6c2	100	84.457	Seriola_lalandi_dorsalis
ENSXMAG00000006739	tnrc6c2	100	86.173	ENSSPAG00000013052	tnrc6c2	87	85.749	Stegastes_partitus
ENSXMAG00000006739	tnrc6c2	90	82.969	ENSTNIG00000004178	tnrc6c2	90	83.188	Tetraodon_nigroviridis
ENSXMAG00000006739	tnrc6c2	100	93.676	ENSXCOG00000013252	tnrc6c2	100	93.676	Xiphophorus_couchianus