EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000006896 (Gene tree)
Gene ID: 102218925
Gene Symbol: crnkl1
Alias: zgc:55327
Full Name: crooked neck pre-mRNA splicing factor 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 6443 bases
Position: chr15:5023916-5030358
Accession: 102218925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000006923	Suf	PF05843.14	5.3e-12	1	1
ENSXMAP00000006923	HAT	PF02184.16	3.4e-37	1	2
ENSXMAP00000006923	HAT	PF02184.16	3.4e-37	2	2
ENSXMAP00000034720	HAT	PF02184.16	1.1e-28	1	2
ENSXMAP00000034720	HAT	PF02184.16	1.1e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000006932	-	2916	XM_005816110	ENSXMAP00000006923	747 (aa)	XP_005816167	M3ZXH9
ENSXMAT00000030157	-	2145	-	ENSXMAP00000034720	714 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000006896's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000006896's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000006896	crnkl1	91	84.751	ENSG00000101343	CRNKL1	97	86.336	Homo_sapiens
ENSXMAG00000006896	crnkl1	96	90.642	ENSAPOG00000009705	crnkl1	97	93.443	Acanthochromis_polyacanthus
ENSXMAG00000006896	crnkl1	91	85.377	ENSAMEG00000000270	CRNKL1	80	87.237	Ailuropoda_melanoleuca
ENSXMAG00000006896	crnkl1	97	87.225	ENSACIG00000015267	crnkl1	94	87.866	Amphilophus_citrinellus
ENSXMAG00000006896	crnkl1	96	91.074	ENSAOCG00000021964	crnkl1	93	90.896	Amphiprion_ocellaris
ENSXMAG00000006896	crnkl1	96	91.176	ENSAPEG00000015041	crnkl1	94	90.896	Amphiprion_percula
ENSXMAG00000006896	crnkl1	96	88.194	ENSATEG00000001068	crnkl1	88	92.975	Anabas_testudineus
ENSXMAG00000006896	crnkl1	88	85.455	ENSAPLG00000013105	CRNKL1	97	84.708	Anas_platyrhynchos
ENSXMAG00000006896	crnkl1	92	85.401	ENSACAG00000005284	CRNKL1	98	86.736	Anolis_carolinensis
ENSXMAG00000006896	crnkl1	84	86.349	ENSANAG00000024889	CRNKL1	99	86.349	Aotus_nancymaae
ENSXMAG00000006896	crnkl1	96	88.462	ENSACLG00000010813	crnkl1	100	87.003	Astatotilapia_calliptera
ENSXMAG00000006896	crnkl1	94	88.478	ENSAMXG00000018334	crnkl1	90	91.304	Astyanax_mexicanus
ENSXMAG00000006896	crnkl1	92	85.298	ENSBTAG00000008472	CRNKL1	96	87.237	Bos_taurus
ENSXMAG00000006896	crnkl1	86	63.919	WBGene00019762	M03F8.3	88	64.145	Caenorhabditis_elegans
ENSXMAG00000006896	crnkl1	91	84.897	ENSCJAG00000005393	CRNKL1	97	86.486	Callithrix_jacchus
ENSXMAG00000006896	crnkl1	91	85.377	ENSCAFG00000005333	CRNKL1	91	87.237	Canis_familiaris
ENSXMAG00000006896	crnkl1	91	85.484	ENSCAFG00020027488	CRNKL1	97	87.237	Canis_lupus_dingo
ENSXMAG00000006896	crnkl1	92	84.425	ENSCHIG00000013171	CRNKL1	96	86.336	Capra_hircus
ENSXMAG00000006896	crnkl1	91	84.751	ENSTSYG00000004197	CRNKL1	97	86.336	Carlito_syrichta
ENSXMAG00000006896	crnkl1	85	83.252	ENSCAPG00000010501	CRNKL1	96	85.142	Cavia_aperea
ENSXMAG00000006896	crnkl1	91	84.457	ENSCPOG00000004418	CRNKL1	97	86.186	Cavia_porcellus
ENSXMAG00000006896	crnkl1	91	84.751	ENSCCAG00000027037	CRNKL1	97	86.336	Cebus_capucinus
ENSXMAG00000006896	crnkl1	91	84.604	ENSCATG00000034247	CRNKL1	97	86.186	Cercocebus_atys
ENSXMAG00000006896	crnkl1	91	84.751	ENSCLAG00000013859	CRNKL1	97	86.486	Chinchilla_lanigera
ENSXMAG00000006896	crnkl1	91	84.604	ENSCSAG00000011434	CRNKL1	97	86.186	Chlorocebus_sabaeus
ENSXMAG00000006896	crnkl1	91	84.638	ENSCHOG00000006371	CRNKL1	81	86.486	Choloepus_hoffmanni
ENSXMAG00000006896	crnkl1	90	86.944	ENSCPBG00000023501	CRNKL1	98	87.034	Chrysemys_picta_bellii
ENSXMAG00000006896	crnkl1	89	68.675	ENSCING00000002709	-	97	68.675	Ciona_intestinalis
ENSXMAG00000006896	crnkl1	91	84.604	ENSCANG00000038789	CRNKL1	97	86.186	Colobus_angolensis_palliatus
ENSXMAG00000006896	crnkl1	91	84.751	ENSCGRG00001001115	-	97	86.486	Cricetulus_griseus_chok1gshd
ENSXMAG00000006896	crnkl1	91	84.751	ENSCGRG00001000687	-	97	86.486	Cricetulus_griseus_chok1gshd
ENSXMAG00000006896	crnkl1	91	84.751	ENSCGRG00000007854	Crnkl1	97	86.486	Cricetulus_griseus_crigri
ENSXMAG00000006896	crnkl1	99	82.548	ENSCSEG00000005594	crnkl1	85	93.145	Cynoglossus_semilaevis
ENSXMAG00000006896	crnkl1	89	97.006	ENSCVAG00000015172	crnkl1	100	91.444	Cyprinodon_variegatus
ENSXMAG00000006896	crnkl1	96	86.667	ENSDARG00000007901	crnkl1	89	90.611	Danio_rerio
ENSXMAG00000006896	crnkl1	92	84.593	ENSDNOG00000016226	CRNKL1	92	86.937	Dasypus_novemcinctus
ENSXMAG00000006896	crnkl1	90	78.838	ENSDORG00000030174	-	99	78.838	Dipodomys_ordii
ENSXMAG00000006896	crnkl1	91	83.430	ENSDORG00000000394	-	97	85.119	Dipodomys_ordii
ENSXMAG00000006896	crnkl1	89	79.522	ENSDORG00000023724	-	99	79.522	Dipodomys_ordii
ENSXMAG00000006896	crnkl1	88	69.369	FBgn0000377	crn	95	69.369	Drosophila_melanogaster
ENSXMAG00000006896	crnkl1	91	74.633	ENSETEG00000003711	CRNKL1	81	75.976	Echinops_telfairi
ENSXMAG00000006896	crnkl1	90	62.705	ENSEBUG00000013461	crnkl1	94	66.719	Eptatretus_burgeri
ENSXMAG00000006896	crnkl1	91	85.484	ENSEASG00005002072	CRNKL1	97	87.237	Equus_asinus_asinus
ENSXMAG00000006896	crnkl1	91	85.484	ENSECAG00000022215	CRNKL1	97	87.237	Equus_caballus
ENSXMAG00000006896	crnkl1	91	82.422	ENSEEUG00000000413	CRNKL1	90	84.234	Erinaceus_europaeus
ENSXMAG00000006896	crnkl1	89	89.505	ENSELUG00000015424	crnkl1	95	89.121	Esox_lucius
ENSXMAG00000006896	crnkl1	91	85.484	ENSFCAG00000000714	CRNKL1	97	87.237	Felis_catus
ENSXMAG00000006896	crnkl1	87	86.830	ENSFALG00000004611	CRNKL1	97	86.830	Ficedula_albicollis
ENSXMAG00000006896	crnkl1	92	84.448	ENSFDAG00000000604	CRNKL1	97	86.787	Fukomys_damarensis
ENSXMAG00000006896	crnkl1	100	86.979	ENSFHEG00000013163	crnkl1	93	92.510	Fundulus_heteroclitus
ENSXMAG00000006896	crnkl1	89	90.269	ENSGMOG00000007609	crnkl1	93	90.030	Gadus_morhua
ENSXMAG00000006896	crnkl1	89	87.106	ENSGALG00000008429	CRNKL1	97	87.106	Gallus_gallus
ENSXMAG00000006896	crnkl1	100	97.995	ENSGAFG00000014249	crnkl1	97	97.995	Gambusia_affinis
ENSXMAG00000006896	crnkl1	96	87.172	ENSGACG00000011852	crnkl1	90	91.518	Gasterosteus_aculeatus
ENSXMAG00000006896	crnkl1	86	85.404	ENSGAGG00000021233	CRNKL1	98	85.491	Gopherus_agassizii
ENSXMAG00000006896	crnkl1	91	84.751	ENSGGOG00000014176	CRNKL1	97	86.336	Gorilla_gorilla
ENSXMAG00000006896	crnkl1	100	86.126	ENSHBUG00000005246	crnkl1	88	94.311	Haplochromis_burtoni
ENSXMAG00000006896	crnkl1	90	85.778	ENSHGLG00000010856	CRNKL1	97	86.787	Heterocephalus_glaber_female
ENSXMAG00000006896	crnkl1	90	85.778	ENSHGLG00100011521	CRNKL1	97	86.787	Heterocephalus_glaber_male
ENSXMAG00000006896	crnkl1	90	89.254	ENSHCOG00000006420	crnkl1	97	89.286	Hippocampus_comes
ENSXMAG00000006896	crnkl1	91	76.106	ENSIPUG00000006836	-	98	76.532	Ictalurus_punctatus
ENSXMAG00000006896	crnkl1	85	70.440	ENSIPUG00000000315	-	99	71.654	Ictalurus_punctatus
ENSXMAG00000006896	crnkl1	87	89.214	ENSIPUG00000006751	crnkl1	90	89.247	Ictalurus_punctatus
ENSXMAG00000006896	crnkl1	91	85.191	ENSSTOG00000014747	CRNKL1	97	86.937	Ictidomys_tridecemlineatus
ENSXMAG00000006896	crnkl1	91	82.951	ENSJJAG00000016926	Crnkl1	97	84.604	Jaculus_jaculus
ENSXMAG00000006896	crnkl1	97	89.793	ENSKMAG00000003620	crnkl1	86	94.478	Kryptolebias_marmoratus
ENSXMAG00000006896	crnkl1	89	75.037	ENSLBEG00000003543	crnkl1	89	74.777	Labrus_bergylta
ENSXMAG00000006896	crnkl1	91	86.969	ENSLACG00000001129	CRNKL1	98	87.761	Latimeria_chalumnae
ENSXMAG00000006896	crnkl1	90	90.433	ENSLOCG00000016889	crnkl1	93	90.164	Lepisosteus_oculatus
ENSXMAG00000006896	crnkl1	91	84.480	ENSLAFG00000004512	CRNKL1	97	86.957	Loxodonta_africana
ENSXMAG00000006896	crnkl1	91	84.604	ENSMFAG00000039893	CRNKL1	97	86.186	Macaca_fascicularis
ENSXMAG00000006896	crnkl1	91	84.604	ENSMMUG00000007709	CRNKL1	97	86.186	Macaca_mulatta
ENSXMAG00000006896	crnkl1	91	84.604	ENSMNEG00000037490	CRNKL1	97	86.186	Macaca_nemestrina
ENSXMAG00000006896	crnkl1	91	84.604	ENSMLEG00000034885	CRNKL1	97	86.186	Mandrillus_leucophaeus
ENSXMAG00000006896	crnkl1	95	90.382	ENSMAMG00000008757	crnkl1	89	93.741	Mastacembelus_armatus
ENSXMAG00000006896	crnkl1	100	87.105	ENSMZEG00005022345	crnkl1	100	87.101	Maylandia_zebra
ENSXMAG00000006896	crnkl1	90	85.926	ENSMGAG00000003452	CRNKL1	92	86.677	Meleagris_gallopavo
ENSXMAG00000006896	crnkl1	91	84.751	ENSMAUG00000020764	Crnkl1	97	86.486	Mesocricetus_auratus
ENSXMAG00000006896	crnkl1	91	84.604	ENSMICG00000006048	CRNKL1	97	86.336	Microcebus_murinus
ENSXMAG00000006896	crnkl1	89	62.199	ENSMOCG00000004179	-	95	62.275	Microtus_ochrogaster
ENSXMAG00000006896	crnkl1	91	76.945	ENSMOCG00000000681	-	96	78.466	Microtus_ochrogaster
ENSXMAG00000006896	crnkl1	84	90.665	ENSMMOG00000017601	crnkl1	97	90.665	Mola_mola
ENSXMAG00000006896	crnkl1	91	82.923	ENSMODG00000005961	-	97	84.094	Monodelphis_domestica
ENSXMAG00000006896	crnkl1	92	79.446	ENSMODG00000010857	-	97	80.746	Monodelphis_domestica
ENSXMAG00000006896	crnkl1	95	72.434	ENSMALG00000011211	crnkl1	88	76.176	Monopterus_albus
ENSXMAG00000006896	crnkl1	91	85.191	MGP_CAROLIEiJ_G0024394	Crnkl1	97	86.787	Mus_caroli
ENSXMAG00000006896	crnkl1	91	85.044	ENSMUSG00000001767	Crnkl1	97	86.787	Mus_musculus
ENSXMAG00000006896	crnkl1	91	84.164	MGP_PahariEiJ_G0025838	Crnkl1	97	85.886	Mus_pahari
ENSXMAG00000006896	crnkl1	91	85.044	MGP_SPRETEiJ_G0025312	Crnkl1	97	86.787	Mus_spretus
ENSXMAG00000006896	crnkl1	91	85.484	ENSMPUG00000001226	CRNKL1	97	87.237	Mustela_putorius_furo
ENSXMAG00000006896	crnkl1	91	84.956	ENSMLUG00000016513	CRNKL1	86	86.807	Myotis_lucifugus
ENSXMAG00000006896	crnkl1	91	82.734	ENSNGAG00000023097	Crnkl1	97	84.389	Nannospalax_galili
ENSXMAG00000006896	crnkl1	96	88.599	ENSNBRG00000007867	crnkl1	88	94.311	Neolamprologus_brichardi
ENSXMAG00000006896	crnkl1	91	81.672	ENSNLEG00000009862	CRNKL1	97	83.183	Nomascus_leucogenys
ENSXMAG00000006896	crnkl1	89	85.607	ENSMEUG00000012167	-	98	86.870	Notamacropus_eugenii
ENSXMAG00000006896	crnkl1	91	80.527	ENSMEUG00000002361	-	97	81.371	Notamacropus_eugenii
ENSXMAG00000006896	crnkl1	79	59.302	ENSOPRG00000009242	-	61	59.302	Ochotona_princeps
ENSXMAG00000006896	crnkl1	91	84.604	ENSODEG00000012175	CRNKL1	97	86.336	Octodon_degus
ENSXMAG00000006896	crnkl1	97	88.446	ENSONIG00000018728	crnkl1	100	85.620	Oreochromis_niloticus
ENSXMAG00000006896	crnkl1	91	84.265	ENSOCUG00000015484	CRNKL1	80	86.677	Oryctolagus_cuniculus
ENSXMAG00000006896	crnkl1	96	87.083	ENSORLG00000017240	crnkl1	90	91.505	Oryzias_latipes
ENSXMAG00000006896	crnkl1	91	90.882	ENSORLG00020001742	crnkl1	90	91.505	Oryzias_latipes_hni
ENSXMAG00000006896	crnkl1	96	87.396	ENSORLG00015019564	crnkl1	90	91.654	Oryzias_latipes_hsok
ENSXMAG00000006896	crnkl1	96	87.828	ENSOMEG00000019895	crnkl1	90	92.250	Oryzias_melastigma
ENSXMAG00000006896	crnkl1	92	84.526	ENSOGAG00000011544	CRNKL1	97	86.486	Otolemur_garnettii
ENSXMAG00000006896	crnkl1	91	85.337	ENSOARG00000002150	CRNKL1	87	87.387	Ovis_aries
ENSXMAG00000006896	crnkl1	91	83.604	ENSPPAG00000027847	CRNKL1	81	85.285	Pan_paniscus
ENSXMAG00000006896	crnkl1	91	85.484	ENSPPRG00000001955	CRNKL1	97	87.237	Panthera_pardus
ENSXMAG00000006896	crnkl1	91	85.484	ENSPTIG00000007393	CRNKL1	97	87.237	Panthera_tigris_altaica
ENSXMAG00000006896	crnkl1	91	84.751	ENSPTRG00000030609	CRNKL1	97	86.336	Pan_troglodytes
ENSXMAG00000006896	crnkl1	91	84.604	ENSPANG00000017420	CRNKL1	97	86.186	Papio_anubis
ENSXMAG00000006896	crnkl1	97	80.707	ENSPKIG00000017093	crnkl1	98	79.392	Paramormyrops_kingsleyae
ENSXMAG00000006896	crnkl1	90	85.246	ENSPSIG00000012705	CRNKL1	97	85.329	Pelodiscus_sinensis
ENSXMAG00000006896	crnkl1	92	84.638	ENSPMGG00000006263	crnkl1	95	85.693	Periophthalmus_magnuspinnatus
ENSXMAG00000006896	crnkl1	91	85.044	ENSPEMG00000000073	-	96	86.787	Peromyscus_maniculatus_bairdii
ENSXMAG00000006896	crnkl1	92	82.044	ENSPMAG00000002250	crnkl1	97	83.185	Petromyzon_marinus
ENSXMAG00000006896	crnkl1	91	85.066	ENSPCIG00000025825	CRNKL1	94	86.269	Phascolarctos_cinereus
ENSXMAG00000006896	crnkl1	100	97.456	ENSPFOG00000005102	crnkl1	100	97.456	Poecilia_formosa
ENSXMAG00000006896	crnkl1	99	97.439	ENSPLAG00000007288	crnkl1	96	97.439	Poecilia_latipinna
ENSXMAG00000006896	crnkl1	100	97.709	ENSPMEG00000008865	crnkl1	99	97.709	Poecilia_mexicana
ENSXMAG00000006896	crnkl1	100	96.796	ENSPREG00000012615	crnkl1	100	96.796	Poecilia_reticulata
ENSXMAG00000006896	crnkl1	91	84.490	ENSPPYG00000010747	CRNKL1	79	86.186	Pongo_abelii
ENSXMAG00000006896	crnkl1	91	80.059	ENSPCAG00000003296	CRNKL1	83	81.832	Procavia_capensis
ENSXMAG00000006896	crnkl1	91	83.456	ENSPCOG00000017608	CRNKL1	81	85.285	Propithecus_coquereli
ENSXMAG00000006896	crnkl1	91	85.229	ENSPVAG00000006207	CRNKL1	81	87.087	Pteropus_vampyrus
ENSXMAG00000006896	crnkl1	96	88.324	ENSPNYG00000001977	crnkl1	88	94.012	Pundamilia_nyererei
ENSXMAG00000006896	crnkl1	94	88.352	ENSPNAG00000001507	crnkl1	96	86.924	Pygocentrus_nattereri
ENSXMAG00000006896	crnkl1	91	85.044	ENSRNOG00000010587	Crnkl1	97	86.787	Rattus_norvegicus
ENSXMAG00000006896	crnkl1	91	84.897	ENSRNOG00000040045	Crnkl1	97	86.637	Rattus_norvegicus
ENSXMAG00000006896	crnkl1	91	84.604	ENSRBIG00000031770	CRNKL1	97	86.186	Rhinopithecus_bieti
ENSXMAG00000006896	crnkl1	91	84.457	ENSRROG00000040450	CRNKL1	97	86.036	Rhinopithecus_roxellana
ENSXMAG00000006896	crnkl1	87	37.192	YLR117C	CLF1	99	37.192	Saccharomyces_cerevisiae
ENSXMAG00000006896	crnkl1	91	84.897	ENSSBOG00000029672	CRNKL1	97	86.486	Saimiri_boliviensis_boliviensis
ENSXMAG00000006896	crnkl1	88	69.863	ENSSHAG00000011199	CRNKL1	99	69.545	Sarcophilus_harrisii
ENSXMAG00000006896	crnkl1	89	90.045	ENSSFOG00015000946	crnkl1	87	89.955	Scleropages_formosus
ENSXMAG00000006896	crnkl1	98	87.500	ENSSMAG00000007933	crnkl1	87	93.155	Scophthalmus_maximus
ENSXMAG00000006896	crnkl1	96	83.077	ENSSDUG00000012625	crnkl1	92	82.386	Seriola_dumerili
ENSXMAG00000006896	crnkl1	97	88.707	ENSSLDG00000021413	crnkl1	87	94.328	Seriola_lalandi_dorsalis
ENSXMAG00000006896	crnkl1	91	84.604	ENSSARG00000006443	CRNKL1	80	86.336	Sorex_araneus
ENSXMAG00000006896	crnkl1	91	85.505	ENSSPUG00000005254	CRNKL1	97	87.256	Sphenodon_punctatus
ENSXMAG00000006896	crnkl1	96	90.756	ENSSPAG00000016150	crnkl1	96	88.133	Stegastes_partitus
ENSXMAG00000006896	crnkl1	92	85.007	ENSSSCG00000038587	CRNKL1	96	87.237	Sus_scrofa
ENSXMAG00000006896	crnkl1	89	86.826	ENSTGUG00000007645	CRNKL1	96	86.826	Taeniopygia_guttata
ENSXMAG00000006896	crnkl1	90	85.395	ENSTRUG00000015417	crnkl1	89	85.544	Takifugu_rubripes
ENSXMAG00000006896	crnkl1	89	90.120	ENSTNIG00000010710	crnkl1	97	90.120	Tetraodon_nigroviridis
ENSXMAG00000006896	crnkl1	84	84.640	ENSTBEG00000001304	CRNKL1	82	84.762	Tupaia_belangeri
ENSXMAG00000006896	crnkl1	84	82.400	ENSTTRG00000000484	CRNKL1	81	82.540	Tursiops_truncatus
ENSXMAG00000006896	crnkl1	91	85.484	ENSUAMG00000018586	CRNKL1	97	87.237	Ursus_americanus
ENSXMAG00000006896	crnkl1	91	85.484	ENSUMAG00000024957	CRNKL1	97	87.237	Ursus_maritimus
ENSXMAG00000006896	crnkl1	91	85.377	ENSVVUG00000012559	CRNKL1	80	87.237	Vulpes_vulpes
ENSXMAG00000006896	crnkl1	90	86.243	ENSXETG00000009698	crnkl1	98	86.607	Xenopus_tropicalis
ENSXMAG00000006896	crnkl1	100	98.663	ENSXCOG00000000824	crnkl1	100	98.663	Xiphophorus_couchianus