EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000007123 (Gene tree)
Gene ID: 102237763
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 16004 bases
Position: chr6:29499943-29515946
Accession: 102237763
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000007137	EST1	PF10374.9	7.5e-25	1	1
ENSXMAP00000007137	EST1_DNA_bind	PF10373.9	3.4e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000007145	-	5887	XM_023335278	ENSXMAP00000007137	1135 (aa)	XP_023191046	M3ZY43

Gene Model

Click here to download ENSXMAG00000007123's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000007123's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000007123	smg7	99	64.464	ENSG00000116698	SMG7	86	92.453	Homo_sapiens
ENSXMAG00000007123	smg7	89	87.073	ENSAPOG00000009611	smg7	96	87.073	Acanthochromis_polyacanthus
ENSXMAG00000007123	smg7	99	64.200	ENSAMEG00000002357	SMG7	99	64.114	Ailuropoda_melanoleuca
ENSXMAG00000007123	smg7	97	79.693	ENSACIG00000015152	smg7	100	80.523	Amphilophus_citrinellus
ENSXMAG00000007123	smg7	100	84.288	ENSAOCG00000013538	smg7	100	85.169	Amphiprion_ocellaris
ENSXMAG00000007123	smg7	100	84.302	ENSAPEG00000007851	smg7	100	85.182	Amphiprion_percula
ENSXMAG00000007123	smg7	100	82.657	ENSATEG00000006931	smg7	100	83.550	Anabas_testudineus
ENSXMAG00000007123	smg7	99	63.302	ENSAPLG00000015811	SMG7	99	63.262	Anas_platyrhynchos
ENSXMAG00000007123	smg7	99	61.716	ENSACAG00000014989	SMG7	99	61.513	Anolis_carolinensis
ENSXMAG00000007123	smg7	99	64.452	ENSANAG00000028114	SMG7	85	91.083	Aotus_nancymaae
ENSXMAG00000007123	smg7	100	82.000	ENSACLG00000022079	smg7	100	81.707	Astatotilapia_calliptera
ENSXMAG00000007123	smg7	100	73.845	ENSAMXG00000020809	smg7	100	74.064	Astyanax_mexicanus
ENSXMAG00000007123	smg7	99	64.635	ENSBTAG00000008003	SMG7	99	64.464	Bos_taurus
ENSXMAG00000007123	smg7	99	64.366	ENSCJAG00000005135	SMG7	85	92.258	Callithrix_jacchus
ENSXMAG00000007123	smg7	99	60.415	ENSCAFG00000013276	SMG7	97	60.332	Canis_familiaris
ENSXMAG00000007123	smg7	99	63.932	ENSCAFG00020015475	SMG7	89	88.415	Canis_lupus_dingo
ENSXMAG00000007123	smg7	100	60.959	ENSCHIG00000018192	SMG7	99	60.794	Capra_hircus
ENSXMAG00000007123	smg7	99	64.605	ENSTSYG00000002667	SMG7	80	92.258	Carlito_syrichta
ENSXMAG00000007123	smg7	99	60.581	ENSCPOG00000008906	SMG7	99	60.050	Cavia_porcellus
ENSXMAG00000007123	smg7	99	64.625	ENSCCAG00000028596	SMG7	85	91.083	Cebus_capucinus
ENSXMAG00000007123	smg7	99	64.721	ENSCATG00000011063	SMG7	85	91.083	Cercocebus_atys
ENSXMAG00000007123	smg7	99	64.691	ENSCLAG00000010751	SMG7	99	64.605	Chinchilla_lanigera
ENSXMAG00000007123	smg7	99	60.762	ENSCSAG00000012654	SMG7	97	60.596	Chlorocebus_sabaeus
ENSXMAG00000007123	smg7	92	56.491	ENSCHOG00000010522	SMG7	93	56.429	Choloepus_hoffmanni
ENSXMAG00000007123	smg7	99	65.547	ENSCPBG00000015724	SMG7	99	64.914	Chrysemys_picta_bellii
ENSXMAG00000007123	smg7	99	64.599	ENSCANG00000015680	SMG7	85	91.083	Colobus_angolensis_palliatus
ENSXMAG00000007123	smg7	99	64.089	ENSCGRG00001013705	Smg7	99	64.003	Cricetulus_griseus_chok1gshd
ENSXMAG00000007123	smg7	99	63.934	ENSCGRG00000018401	Smg7	100	63.848	Cricetulus_griseus_crigri
ENSXMAG00000007123	smg7	99	85.942	ENSCVAG00000011842	smg7	100	87.356	Cyprinodon_variegatus
ENSXMAG00000007123	smg7	100	73.345	ENSDARG00000060767	smg7	100	74.087	Danio_rerio
ENSXMAG00000007123	smg7	99	61.148	ENSDORG00000007331	Smg7	99	60.982	Dipodomys_ordii
ENSXMAG00000007123	smg7	96	59.828	ENSETEG00000002654	SMG7	99	59.914	Echinops_telfairi
ENSXMAG00000007123	smg7	99	61.398	ENSEASG00005006524	SMG7	99	61.231	Equus_asinus_asinus
ENSXMAG00000007123	smg7	99	63.339	ENSECAG00000004313	SMG7	99	61.314	Equus_caballus
ENSXMAG00000007123	smg7	96	59.624	ENSEEUG00000002024	SMG7	94	59.453	Erinaceus_europaeus
ENSXMAG00000007123	smg7	100	71.133	ENSELUG00000010293	smg7	99	73.886	Esox_lucius
ENSXMAG00000007123	smg7	99	62.823	ENSFCAG00000010900	SMG7	99	62.489	Felis_catus
ENSXMAG00000007123	smg7	99	60.134	ENSFALG00000003047	SMG7	100	61.144	Ficedula_albicollis
ENSXMAG00000007123	smg7	99	60.801	ENSFDAG00000012121	SMG7	99	60.354	Fukomys_damarensis
ENSXMAG00000007123	smg7	100	88.792	ENSFHEG00000011073	smg7	100	88.967	Fundulus_heteroclitus
ENSXMAG00000007123	smg7	88	79.699	ENSGMOG00000004916	smg7	91	79.699	Gadus_morhua
ENSXMAG00000007123	smg7	99	63.861	ENSGALG00000004667	SMG7	99	64.072	Gallus_gallus
ENSXMAG00000007123	smg7	100	97.276	ENSGAFG00000019000	smg7	100	97.276	Gambusia_affinis
ENSXMAG00000007123	smg7	98	79.286	ENSGACG00000001634	smg7	99	79.267	Gasterosteus_aculeatus
ENSXMAG00000007123	smg7	99	64.464	ENSGGOG00000002342	SMG7	82	90.000	Gorilla_gorilla
ENSXMAG00000007123	smg7	98	80.923	ENSHBUG00000003726	smg7	99	80.588	Haplochromis_burtoni
ENSXMAG00000007123	smg7	99	65.064	ENSHGLG00000009353	SMG7	99	64.893	Heterocephalus_glaber_female
ENSXMAG00000007123	smg7	99	55.758	ENSHGLG00100004878	-	99	55.399	Heterocephalus_glaber_male
ENSXMAG00000007123	smg7	99	64.979	ENSHGLG00100009637	-	99	64.807	Heterocephalus_glaber_male
ENSXMAG00000007123	smg7	100	74.038	ENSIPUG00000016997	smg7	100	73.864	Ictalurus_punctatus
ENSXMAG00000007123	smg7	99	63.330	ENSSTOG00000000401	SMG7	99	63.158	Ictidomys_tridecemlineatus
ENSXMAG00000007123	smg7	99	61.000	ENSJJAG00000012351	Smg7	99	60.949	Jaculus_jaculus
ENSXMAG00000007123	smg7	97	80.914	ENSKMAG00000004900	smg7	100	81.272	Kryptolebias_marmoratus
ENSXMAG00000007123	smg7	99	80.927	ENSLBEG00000002983	smg7	99	81.627	Labrus_bergylta
ENSXMAG00000007123	smg7	52	72.697	ENSLBEG00000005220	-	75	73.199	Labrus_bergylta
ENSXMAG00000007123	smg7	100	65.535	ENSLACG00000000972	SMG7	99	65.506	Latimeria_chalumnae
ENSXMAG00000007123	smg7	99	65.568	ENSLOCG00000002010	smg7	99	65.404	Lepisosteus_oculatus
ENSXMAG00000007123	smg7	99	60.837	ENSLAFG00000008186	SMG7	99	60.669	Loxodonta_africana
ENSXMAG00000007123	smg7	99	62.995	ENSMFAG00000031653	SMG7	85	91.083	Macaca_fascicularis
ENSXMAG00000007123	smg7	99	63.769	ENSMMUG00000018458	SMG7	99	63.597	Macaca_mulatta
ENSXMAG00000007123	smg7	99	64.721	ENSMNEG00000034798	SMG7	85	91.083	Macaca_nemestrina
ENSXMAG00000007123	smg7	99	64.721	ENSMLEG00000037170	SMG7	99	64.549	Mandrillus_leucophaeus
ENSXMAG00000007123	smg7	88	80.514	ENSMAMG00000018733	smg7	85	81.089	Mastacembelus_armatus
ENSXMAG00000007123	smg7	100	82.189	ENSMZEG00005015247	smg7	100	81.620	Maylandia_zebra
ENSXMAG00000007123	smg7	99	63.185	ENSMGAG00000001561	SMG7	99	63.307	Meleagris_gallopavo
ENSXMAG00000007123	smg7	99	64.206	ENSMAUG00000019484	Smg7	99	64.034	Mesocricetus_auratus
ENSXMAG00000007123	smg7	99	64.807	ENSMICG00000007145	SMG7	81	92.258	Microcebus_murinus
ENSXMAG00000007123	smg7	99	64.237	ENSMOCG00000020748	Smg7	99	63.691	Microtus_ochrogaster
ENSXMAG00000007123	smg7	99	79.108	ENSMMOG00000001524	smg7	99	79.895	Mola_mola
ENSXMAG00000007123	smg7	92	64.646	ENSMODG00000007139	SMG7	99	64.646	Monodelphis_domestica
ENSXMAG00000007123	smg7	100	82.635	ENSMALG00000000061	smg7	93	83.159	Monopterus_albus
ENSXMAG00000007123	smg7	99	64.660	MGP_CAROLIEiJ_G0014704	Smg7	99	64.114	Mus_caroli
ENSXMAG00000007123	smg7	99	64.200	ENSMUSG00000042772	Smg7	99	64.028	Mus_musculus
ENSXMAG00000007123	smg7	99	64.372	MGP_PahariEiJ_G0027940	Smg7	99	64.200	Mus_pahari
ENSXMAG00000007123	smg7	99	64.286	MGP_SPRETEiJ_G0015511	Smg7	99	64.114	Mus_spretus
ENSXMAG00000007123	smg7	98	60.422	ENSMPUG00000011732	SMG7	97	60.338	Mustela_putorius_furo
ENSXMAG00000007123	smg7	99	60.801	ENSMLUG00000015417	SMG7	99	60.634	Myotis_lucifugus
ENSXMAG00000007123	smg7	100	63.846	ENSNGAG00000009836	Smg7	100	63.590	Nannospalax_galili
ENSXMAG00000007123	smg7	98	75.728	ENSNBRG00000024343	smg7	99	75.575	Neolamprologus_brichardi
ENSXMAG00000007123	smg7	99	64.635	ENSNLEG00000018018	SMG7	99	64.464	Nomascus_leucogenys
ENSXMAG00000007123	smg7	70	65.341	ENSMEUG00000004681	SMG7	73	65.341	Notamacropus_eugenii
ENSXMAG00000007123	smg7	96	58.231	ENSOPRG00000013942	SMG7	96	58.494	Ochotona_princeps
ENSXMAG00000007123	smg7	99	64.378	ENSODEG00000010390	SMG7	99	64.378	Octodon_degus
ENSXMAG00000007123	smg7	100	82.261	ENSONIG00000000277	smg7	100	82.317	Oreochromis_niloticus
ENSXMAG00000007123	smg7	99	60.369	ENSOANG00000000994	SMG7	100	60.202	Ornithorhynchus_anatinus
ENSXMAG00000007123	smg7	99	59.235	ENSOCUG00000005887	SMG7	92	59.068	Oryctolagus_cuniculus
ENSXMAG00000007123	smg7	100	78.772	ENSORLG00000007314	smg7	100	79.298	Oryzias_latipes
ENSXMAG00000007123	smg7	100	78.860	ENSORLG00020015779	smg7	100	79.386	Oryzias_latipes_hni
ENSXMAG00000007123	smg7	100	79.386	ENSORLG00015012289	smg7	100	79.298	Oryzias_latipes_hsok
ENSXMAG00000007123	smg7	100	76.030	ENSOMEG00000002328	smg7	100	76.367	Oryzias_melastigma
ENSXMAG00000007123	smg7	96	59.657	ENSOGAG00000003107	SMG7	93	59.587	Otolemur_garnettii
ENSXMAG00000007123	smg7	99	63.438	ENSOARG00000001352	SMG7	100	63.264	Ovis_aries
ENSXMAG00000007123	smg7	99	64.635	ENSPPAG00000031619	SMG7	90	87.879	Pan_paniscus
ENSXMAG00000007123	smg7	99	64.549	ENSPPRG00000011222	SMG7	99	64.549	Panthera_pardus
ENSXMAG00000007123	smg7	96	61.230	ENSPTIG00000007242	SMG7	100	61.230	Panthera_tigris_altaica
ENSXMAG00000007123	smg7	99	64.635	ENSPTRG00000001764	SMG7	84	92.258	Pan_troglodytes
ENSXMAG00000007123	smg7	99	64.721	ENSPANG00000004520	SMG7	99	64.549	Papio_anubis
ENSXMAG00000007123	smg7	99	67.428	ENSPKIG00000007242	smg7	99	67.133	Paramormyrops_kingsleyae
ENSXMAG00000007123	smg7	99	64.696	ENSPSIG00000012201	SMG7	100	64.286	Pelodiscus_sinensis
ENSXMAG00000007123	smg7	71	48.091	ENSPMGG00000021833	smg7	97	48.086	Periophthalmus_magnuspinnatus
ENSXMAG00000007123	smg7	99	63.810	ENSPEMG00000011315	Smg7	99	63.636	Peromyscus_maniculatus_bairdii
ENSXMAG00000007123	smg7	99	64.948	ENSPCIG00000003786	SMG7	89	91.875	Phascolarctos_cinereus
ENSXMAG00000007123	smg7	100	93.429	ENSPFOG00000019219	smg7	100	93.429	Poecilia_formosa
ENSXMAG00000007123	smg7	100	97.625	ENSPLAG00000001446	smg7	100	97.625	Poecilia_latipinna
ENSXMAG00000007123	smg7	97	97.545	ENSPMEG00000005218	smg7	99	97.545	Poecilia_mexicana
ENSXMAG00000007123	smg7	87	92.619	ENSPREG00000019039	smg7	91	92.113	Poecilia_reticulata
ENSXMAG00000007123	smg7	99	64.635	ENSPPYG00000000427	SMG7	99	64.464	Pongo_abelii
ENSXMAG00000007123	smg7	89	69.869	ENSPCAG00000008360	SMG7	86	69.869	Procavia_capensis
ENSXMAG00000007123	smg7	99	63.503	ENSPCOG00000011996	SMG7	76	92.258	Propithecus_coquereli
ENSXMAG00000007123	smg7	91	56.664	ENSPVAG00000000851	SMG7	89	56.664	Pteropus_vampyrus
ENSXMAG00000007123	smg7	100	82.071	ENSPNYG00000007643	smg7	100	81.921	Pundamilia_nyererei
ENSXMAG00000007123	smg7	100	74.372	ENSPNAG00000011374	smg7	100	74.719	Pygocentrus_nattereri
ENSXMAG00000007123	smg7	99	64.402	ENSRNOG00000027962	Smg7	99	64.932	Rattus_norvegicus
ENSXMAG00000007123	smg7	99	64.635	ENSRBIG00000036316	SMG7	99	64.464	Rhinopithecus_bieti
ENSXMAG00000007123	smg7	99	64.635	ENSRROG00000035719	SMG7	99	64.464	Rhinopithecus_roxellana
ENSXMAG00000007123	smg7	99	63.053	ENSSBOG00000023454	SMG7	86	92.453	Saimiri_boliviensis_boliviensis
ENSXMAG00000007123	smg7	99	64.772	ENSSHAG00000013147	SMG7	99	64.488	Sarcophilus_harrisii
ENSXMAG00000007123	smg7	100	70.557	ENSSFOG00015017252	smg7	100	70.383	Scleropages_formosus
ENSXMAG00000007123	smg7	100	80.823	ENSSMAG00000006067	smg7	100	81.031	Scophthalmus_maximus
ENSXMAG00000007123	smg7	64	88.154	ENSSDUG00000017543	smg7	100	84.124	Seriola_dumerili
ENSXMAG00000007123	smg7	99	64.630	ENSSPUG00000002064	SMG7	99	63.997	Sphenodon_punctatus
ENSXMAG00000007123	smg7	99	81.206	ENSSPAG00000008733	smg7	99	81.469	Stegastes_partitus
ENSXMAG00000007123	smg7	99	63.754	ENSSSCG00000015558	SMG7	99	63.581	Sus_scrofa
ENSXMAG00000007123	smg7	99	62.944	ENSTGUG00000003928	SMG7	100	64.508	Taeniopygia_guttata
ENSXMAG00000007123	smg7	100	69.694	ENSTNIG00000002802	smg7	100	68.957	Tetraodon_nigroviridis
ENSXMAG00000007123	smg7	78	66.286	ENSTBEG00000003220	SMG7	72	66.286	Tupaia_belangeri
ENSXMAG00000007123	smg7	96	60.207	ENSTTRG00000014778	SMG7	94	60.034	Tursiops_truncatus
ENSXMAG00000007123	smg7	96	62.121	ENSUAMG00000017473	SMG7	100	62.032	Ursus_americanus
ENSXMAG00000007123	smg7	96	62.121	ENSUMAG00000016389	SMG7	100	62.032	Ursus_maritimus
ENSXMAG00000007123	smg7	99	63.072	ENSVVUG00000008976	SMG7	99	62.985	Vulpes_vulpes
ENSXMAG00000007123	smg7	99	59.594	ENSXETG00000012528	smg7	99	59.610	Xenopus_tropicalis