EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000007253 (Gene tree)
Gene ID: 102227754
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 16714 bases
Position: chr18:8136635-8153348
Accession: 102227754
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000024518	Npa1	PF11707.8	8e-80	1	1
ENSXMAP00000007274	Npa1	PF11707.8	1.1e-74	1	1
ENSXMAP00000031603	Npa1	PF11707.8	2.6e-53	1	2
ENSXMAP00000031603	Npa1	PF11707.8	2.6e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000007282	-	6168	-	ENSXMAP00000007274	2055 (aa)	-	M3ZYI0
ENSXMAT00000024365	-	6231	-	ENSXMAP00000031603	2076 (aa)	-	-
ENSXMAT00000026645	-	6387	XM_014475829	ENSXMAP00000024518	2128 (aa)	XP_014331315	-

Gene Model

Click here to download ENSXMAG00000007253's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000007253's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000007253	urb1	98	41.092	ENSG00000142207	URB1	99	40.803	Homo_sapiens
ENSXMAG00000007253	urb1	100	69.108	ENSAPOG00000020308	urb1	100	69.017	Acanthochromis_polyacanthus
ENSXMAG00000007253	urb1	97	45.919	ENSAMEG00000011998	URB1	99	41.414	Ailuropoda_melanoleuca
ENSXMAG00000007253	urb1	96	67.804	ENSACIG00000003248	urb1	97	64.605	Amphilophus_citrinellus
ENSXMAG00000007253	urb1	100	65.731	ENSAOCG00000010364	urb1	100	65.639	Amphiprion_ocellaris
ENSXMAG00000007253	urb1	100	65.186	ENSAPEG00000010758	urb1	100	65.096	Amphiprion_percula
ENSXMAG00000007253	urb1	100	65.826	ENSATEG00000011790	urb1	100	65.826	Anabas_testudineus
ENSXMAG00000007253	urb1	95	47.994	ENSAPLG00000012791	URB1	99	43.199	Anas_platyrhynchos
ENSXMAG00000007253	urb1	99	48.454	ENSACAG00000002817	URB1	97	49.485	Anolis_carolinensis
ENSXMAG00000007253	urb1	99	41.413	ENSANAG00000024617	URB1	99	41.495	Aotus_nancymaae
ENSXMAG00000007253	urb1	98	68.626	ENSACLG00000024865	urb1	100	66.033	Astatotilapia_calliptera
ENSXMAG00000007253	urb1	99	59.694	ENSAMXG00000012306	urb1	97	59.694	Astyanax_mexicanus
ENSXMAG00000007253	urb1	98	41.158	ENSBTAG00000012412	URB1	98	41.292	Bos_taurus
ENSXMAG00000007253	urb1	99	40.813	ENSCJAG00000009118	URB1	99	40.765	Callithrix_jacchus
ENSXMAG00000007253	urb1	98	45.590	ENSCAFG00000008892	URB1	99	41.164	Canis_familiaris
ENSXMAG00000007253	urb1	98	45.436	ENSCAFG00020025987	-	99	40.843	Canis_lupus_dingo
ENSXMAG00000007253	urb1	98	44.691	ENSCAFG00020025994	-	99	40.635	Canis_lupus_dingo
ENSXMAG00000007253	urb1	99	41.068	ENSCHIG00000015645	URB1	99	41.068	Capra_hircus
ENSXMAG00000007253	urb1	99	40.705	ENSTSYG00000013286	URB1	99	40.705	Carlito_syrichta
ENSXMAG00000007253	urb1	96	45.011	ENSCAPG00000015589	URB1	99	40.513	Cavia_aperea
ENSXMAG00000007253	urb1	98	45.356	ENSCPOG00000006748	URB1	99	41.711	Cavia_porcellus
ENSXMAG00000007253	urb1	99	41.460	ENSCCAG00000021299	URB1	99	41.454	Cebus_capucinus
ENSXMAG00000007253	urb1	99	41.376	ENSCATG00000042630	URB1	99	41.339	Cercocebus_atys
ENSXMAG00000007253	urb1	98	48.148	ENSCLAG00000005262	URB1	97	48.148	Chinchilla_lanigera
ENSXMAG00000007253	urb1	99	46.591	ENSCSAG00000009584	URB1	97	44.898	Chlorocebus_sabaeus
ENSXMAG00000007253	urb1	98	48.457	ENSCPBG00000006454	URB1	99	43.603	Chrysemys_picta_bellii
ENSXMAG00000007253	urb1	99	41.332	ENSCANG00000031088	URB1	99	41.295	Colobus_angolensis_palliatus
ENSXMAG00000007253	urb1	97	45.796	ENSCGRG00001010616	Urb1	99	41.148	Cricetulus_griseus_chok1gshd
ENSXMAG00000007253	urb1	96	45.796	ENSCGRG00000015840	Urb1	99	41.558	Cricetulus_griseus_crigri
ENSXMAG00000007253	urb1	100	71.585	ENSCSEG00000012616	urb1	99	71.585	Cynoglossus_semilaevis
ENSXMAG00000007253	urb1	99	71.981	ENSCVAG00000009076	urb1	98	78.689	Cyprinodon_variegatus
ENSXMAG00000007253	urb1	99	60.541	ENSDARG00000060308	urb1	97	60.541	Danio_rerio
ENSXMAG00000007253	urb1	89	46.377	ENSDNOG00000015586	URB1	99	46.377	Dasypus_novemcinctus
ENSXMAG00000007253	urb1	98	42.082	ENSDORG00000006735	Urb1	99	41.832	Dipodomys_ordii
ENSXMAG00000007253	urb1	91	51.908	ENSETEG00000009080	URB1	84	51.908	Echinops_telfairi
ENSXMAG00000007253	urb1	93	49.695	ENSEASG00005007711	URB1	99	45.353	Equus_asinus_asinus
ENSXMAG00000007253	urb1	98	43.340	ENSECAG00000013206	URB1	97	43.387	Equus_caballus
ENSXMAG00000007253	urb1	97	57.709	ENSELUG00000020516	urb1	97	63.429	Esox_lucius
ENSXMAG00000007253	urb1	99	41.015	ENSFCAG00000002177	URB1	99	41.015	Felis_catus
ENSXMAG00000007253	urb1	96	43.252	ENSFALG00000004636	URB1	99	40.422	Ficedula_albicollis
ENSXMAG00000007253	urb1	99	41.898	ENSFDAG00000007288	URB1	95	41.889	Fukomys_damarensis
ENSXMAG00000007253	urb1	99	74.188	ENSFHEG00000000202	urb1	99	74.213	Fundulus_heteroclitus
ENSXMAG00000007253	urb1	91	56.453	ENSGMOG00000001838	urb1	90	56.453	Gadus_morhua
ENSXMAG00000007253	urb1	98	55.738	ENSGALG00000015887	URB1	96	55.738	Gallus_gallus
ENSXMAG00000007253	urb1	99	96.703	ENSGAFG00000020694	urb1	97	96.703	Gambusia_affinis
ENSXMAG00000007253	urb1	99	76.364	ENSGACG00000011703	urb1	99	76.364	Gasterosteus_aculeatus
ENSXMAG00000007253	urb1	98	48.511	ENSGAGG00000022544	URB1	99	43.769	Gopherus_agassizii
ENSXMAG00000007253	urb1	99	41.072	ENSGGOG00000000285	URB1	99	41.023	Gorilla_gorilla
ENSXMAG00000007253	urb1	98	68.626	ENSHBUG00000001904	urb1	100	66.033	Haplochromis_burtoni
ENSXMAG00000007253	urb1	96	45.003	ENSHGLG00000004907	URB1	99	40.830	Heterocephalus_glaber_female
ENSXMAG00000007253	urb1	96	45.469	ENSHGLG00100010749	URB1	99	41.174	Heterocephalus_glaber_male
ENSXMAG00000007253	urb1	79	63.420	ENSHCOG00000018683	urb1	99	66.296	Hippocampus_comes
ENSXMAG00000007253	urb1	99	59.783	ENSIPUG00000014721	urb1	98	59.783	Ictalurus_punctatus
ENSXMAG00000007253	urb1	96	45.973	ENSSTOG00000004539	URB1	99	41.133	Ictidomys_tridecemlineatus
ENSXMAG00000007253	urb1	93	75.361	ENSKMAG00000006001	urb1	99	75.120	Kryptolebias_marmoratus
ENSXMAG00000007253	urb1	98	65.582	ENSLBEG00000027208	urb1	99	63.040	Labrus_bergylta
ENSXMAG00000007253	urb1	97	56.209	ENSLACG00000017059	URB1	95	56.209	Latimeria_chalumnae
ENSXMAG00000007253	urb1	99	64.865	ENSLOCG00000009190	urb1	99	64.865	Lepisosteus_oculatus
ENSXMAG00000007253	urb1	98	46.035	ENSLAFG00000010407	URB1	99	41.444	Loxodonta_africana
ENSXMAG00000007253	urb1	99	41.215	ENSMFAG00000034391	URB1	97	41.179	Macaca_fascicularis
ENSXMAG00000007253	urb1	99	41.200	ENSMMUG00000010295	URB1	99	41.164	Macaca_mulatta
ENSXMAG00000007253	urb1	99	40.600	ENSMNEG00000032981	URB1	99	40.420	Macaca_nemestrina
ENSXMAG00000007253	urb1	99	41.439	ENSMLEG00000041435	URB1	99	41.400	Mandrillus_leucophaeus
ENSXMAG00000007253	urb1	98	67.829	ENSMAMG00000011238	urb1	99	64.273	Mastacembelus_armatus
ENSXMAG00000007253	urb1	100	66.375	ENSMZEG00005011862	urb1	100	66.421	Maylandia_zebra
ENSXMAG00000007253	urb1	97	61.111	ENSMGAG00000014512	URB1	96	61.111	Meleagris_gallopavo
ENSXMAG00000007253	urb1	91	51.740	ENSMAUG00000010516	Urb1	99	51.183	Mesocricetus_auratus
ENSXMAG00000007253	urb1	99	41.426	ENSMICG00000016424	URB1	99	41.295	Microcebus_murinus
ENSXMAG00000007253	urb1	96	45.247	ENSMOCG00000012613	Urb1	99	40.837	Microtus_ochrogaster
ENSXMAG00000007253	urb1	98	45.833	ENSMODG00000021076	URB1	99	41.164	Monodelphis_domestica
ENSXMAG00000007253	urb1	99	72.449	ENSMALG00000017411	urb1	98	72.449	Monopterus_albus
ENSXMAG00000007253	urb1	99	41.358	MGP_CAROLIEiJ_G0020948	Urb1	99	41.358	Mus_caroli
ENSXMAG00000007253	urb1	99	41.270	ENSMUSG00000039929	Urb1	99	41.270	Mus_musculus
ENSXMAG00000007253	urb1	99	40.989	MGP_PahariEiJ_G0016653	Urb1	99	40.989	Mus_pahari
ENSXMAG00000007253	urb1	99	41.490	MGP_SPRETEiJ_G0021854	Urb1	99	41.490	Mus_spretus
ENSXMAG00000007253	urb1	98	45.779	ENSMPUG00000001123	URB1	99	41.151	Mustela_putorius_furo
ENSXMAG00000007253	urb1	99	40.600	ENSNGAG00000001905	Urb1	99	40.600	Nannospalax_galili
ENSXMAG00000007253	urb1	84	67.424	ENSNBRG00000001049	urb1	99	67.424	Neolamprologus_brichardi
ENSXMAG00000007253	urb1	98	40.161	ENSNLEG00000026872	URB1	99	39.929	Nomascus_leucogenys
ENSXMAG00000007253	urb1	92	56.343	ENSMEUG00000010828	URB1	95	41.131	Notamacropus_eugenii
ENSXMAG00000007253	urb1	99	40.107	ENSOPRG00000013482	URB1	99	39.920	Ochotona_princeps
ENSXMAG00000007253	urb1	99	41.267	ENSODEG00000002587	URB1	99	41.223	Octodon_degus
ENSXMAG00000007253	urb1	98	68.939	ENSONIG00000005599	urb1	100	66.357	Oreochromis_niloticus
ENSXMAG00000007253	urb1	99	42.275	ENSOCUG00000009381	URB1	98	42.275	Oryctolagus_cuniculus
ENSXMAG00000007253	urb1	99	66.649	ENSORLG00000003429	urb1	99	63.769	Oryzias_latipes
ENSXMAG00000007253	urb1	99	66.199	ENSORLG00020013785	urb1	99	63.347	Oryzias_latipes_hni
ENSXMAG00000007253	urb1	98	64.182	ENSORLG00015019421	urb1	99	64.182	Oryzias_latipes_hsok
ENSXMAG00000007253	urb1	78	70.460	ENSOMEG00000002094	urb1	98	70.460	Oryzias_melastigma
ENSXMAG00000007253	urb1	99	41.358	ENSOGAG00000017140	URB1	99	41.446	Otolemur_garnettii
ENSXMAG00000007253	urb1	96	46.937	ENSOARG00000013679	URB1	99	46.553	Ovis_aries
ENSXMAG00000007253	urb1	99	40.984	ENSPPAG00000003423	URB1	99	40.935	Pan_paniscus
ENSXMAG00000007253	urb1	99	41.062	ENSPPRG00000023131	URB1	99	41.067	Panthera_pardus
ENSXMAG00000007253	urb1	87	45.156	ENSPTIG00000016125	URB1	92	42.611	Panthera_tigris_altaica
ENSXMAG00000007253	urb1	99	40.895	ENSPTRG00000013852	URB1	99	40.847	Pan_troglodytes
ENSXMAG00000007253	urb1	99	41.395	ENSPANG00000021964	URB1	99	41.357	Papio_anubis
ENSXMAG00000007253	urb1	99	49.274	ENSPKIG00000003683	urb1	99	49.494	Paramormyrops_kingsleyae
ENSXMAG00000007253	urb1	98	44.886	ENSPEMG00000021205	Urb1	98	41.028	Peromyscus_maniculatus_bairdii
ENSXMAG00000007253	urb1	81	32.627	ENSPMAG00000009733	URB1	99	33.092	Petromyzon_marinus
ENSXMAG00000007253	urb1	97	45.729	ENSPCIG00000016350	URB1	99	41.451	Phascolarctos_cinereus
ENSXMAG00000007253	urb1	96	88.618	ENSPLAG00000004371	urb1	100	86.606	Poecilia_latipinna
ENSXMAG00000007253	urb1	99	89.138	ENSPMEG00000006634	urb1	100	87.506	Poecilia_mexicana
ENSXMAG00000007253	urb1	100	94.505	ENSPREG00000013453	urb1	97	94.505	Poecilia_reticulata
ENSXMAG00000007253	urb1	99	41.582	ENSPPYG00000011359	URB1	99	41.337	Pongo_abelii
ENSXMAG00000007253	urb1	97	42.728	ENSPCAG00000007430	URB1	95	42.728	Procavia_capensis
ENSXMAG00000007253	urb1	99	40.692	ENSPCOG00000022695	URB1	99	40.822	Propithecus_coquereli
ENSXMAG00000007253	urb1	97	44.635	ENSPVAG00000000889	URB1	99	40.723	Pteropus_vampyrus
ENSXMAG00000007253	urb1	100	64.076	ENSPNYG00000010589	urb1	100	64.121	Pundamilia_nyererei
ENSXMAG00000007253	urb1	99	64.324	ENSPNAG00000019324	urb1	98	64.324	Pygocentrus_nattereri
ENSXMAG00000007253	urb1	99	40.971	ENSRNOG00000002080	Urb1	99	41.104	Rattus_norvegicus
ENSXMAG00000007253	urb1	96	45.891	ENSRBIG00000033122	URB1	99	41.515	Rhinopithecus_bieti
ENSXMAG00000007253	urb1	96	45.915	ENSRROG00000040237	URB1	99	41.489	Rhinopithecus_roxellana
ENSXMAG00000007253	urb1	99	41.589	ENSSBOG00000027672	URB1	99	41.568	Saimiri_boliviensis_boliviensis
ENSXMAG00000007253	urb1	99	41.272	ENSSHAG00000005140	URB1	99	41.272	Sarcophilus_harrisii
ENSXMAG00000007253	urb1	92	52.178	ENSSFOG00015000339	urb1	99	52.225	Scleropages_formosus
ENSXMAG00000007253	urb1	98	68.549	ENSSMAG00000003782	urb1	99	74.863	Scophthalmus_maximus
ENSXMAG00000007253	urb1	99	71.310	ENSSDUG00000012313	urb1	99	69.231	Seriola_dumerili
ENSXMAG00000007253	urb1	100	79.781	ENSSLDG00000023179	urb1	99	79.781	Seriola_lalandi_dorsalis
ENSXMAG00000007253	urb1	97	47.005	ENSSPUG00000012447	URB1	99	42.630	Sphenodon_punctatus
ENSXMAG00000007253	urb1	99	70.222	ENSSPAG00000006325	urb1	99	69.090	Stegastes_partitus
ENSXMAG00000007253	urb1	99	53.631	ENSSSCG00000032024	URB1	97	53.631	Sus_scrofa
ENSXMAG00000007253	urb1	77	46.702	ENSTGUG00000013442	URB1	100	46.702	Taeniopygia_guttata
ENSXMAG00000007253	urb1	100	72.131	ENSTRUG00000009372	urb1	97	72.131	Takifugu_rubripes
ENSXMAG00000007253	urb1	97	63.498	ENSTNIG00000016277	urb1	99	59.991	Tetraodon_nigroviridis
ENSXMAG00000007253	urb1	66	54.639	ENSTBEG00000010044	URB1	62	54.639	Tupaia_belangeri
ENSXMAG00000007253	urb1	87	65.591	ENSTTRG00000007712	URB1	85	65.591	Tursiops_truncatus
ENSXMAG00000007253	urb1	97	45.661	ENSUAMG00000012231	URB1	99	41.535	Ursus_americanus
ENSXMAG00000007253	urb1	87	45.963	ENSUMAG00000017419	URB1	94	44.142	Ursus_maritimus
ENSXMAG00000007253	urb1	67	61.806	ENSVPAG00000001164	URB1	65	61.806	Vicugna_pacos
ENSXMAG00000007253	urb1	95	52.840	ENSVVUG00000000551	URB1	99	41.511	Vulpes_vulpes
ENSXMAG00000007253	urb1	99	42.198	ENSXETG00000009895	urb1	99	41.941	Xenopus_tropicalis
ENSXMAG00000007253	urb1	100	98.352	ENSXCOG00000005500	urb1	100	98.352	Xiphophorus_couchianus