EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000007369 (Gene tree)
Gene ID: 102230809
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 16957 bases
Position: chr7:3051586-3068542
Accession: 102230809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000007412	SF3b1	PF08920.10	9.4e-48	1	1
ENSXMAP00000021301	SF3b1	PF08920.10	1.4e-47	1	1
ENSXMAP00000037476	SF3b1	PF08920.10	4.6e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000026558	-	3927	-	ENSXMAP00000037476	1308 (aa)	-	-
ENSXMAT00000032033	-	4730	-	ENSXMAP00000021301	1298 (aa)	-	-
ENSXMAT00000007420	-	4904	XM_023337284	ENSXMAP00000007412	1315 (aa)	XP_023193052	M3ZYW8

Gene Model

Click here to download ENSXMAG00000007369's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000007369's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000007369	sf3b1	100	93.692	ENSG00000115524	SF3B1	100	93.394	Homo_sapiens
ENSXMAG00000007369	sf3b1	100	98.480	ENSAPOG00000011894	sf3b1	100	98.480	Acanthochromis_polyacanthus
ENSXMAG00000007369	sf3b1	99	93.576	ENSAMEG00000013809	SF3B1	99	93.277	Ailuropoda_melanoleuca
ENSXMAG00000007369	sf3b1	100	97.612	ENSACIG00000020910	sf3b1	97	97.567	Amphilophus_citrinellus
ENSXMAG00000007369	sf3b1	100	98.480	ENSAOCG00000004478	sf3b1	100	98.480	Amphiprion_ocellaris
ENSXMAG00000007369	sf3b1	100	98.480	ENSAPEG00000012937	sf3b1	100	98.480	Amphiprion_percula
ENSXMAG00000007369	sf3b1	100	98.555	ENSATEG00000020435	sf3b1	100	98.555	Anabas_testudineus
ENSXMAG00000007369	sf3b1	99	93.949	ENSAPLG00000003993	SF3B1	99	93.721	Anas_platyrhynchos
ENSXMAG00000007369	sf3b1	100	93.764	ENSACAG00000009612	SF3B1	100	93.617	Anolis_carolinensis
ENSXMAG00000007369	sf3b1	100	93.692	ENSANAG00000021577	SF3B1	100	94.692	Aotus_nancymaae
ENSXMAG00000007369	sf3b1	100	97.381	ENSACLG00000023470	sf3b1	100	97.338	Astatotilapia_calliptera
ENSXMAG00000007369	sf3b1	100	96.811	ENSAMXG00000002219	sf3b1	100	96.811	Astyanax_mexicanus
ENSXMAG00000007369	sf3b1	100	93.692	ENSBTAG00000008915	SF3B1	100	93.394	Bos_taurus
ENSXMAG00000007369	sf3b1	99	64.649	WBGene00011605	sftb-1	99	64.723	Caenorhabditis_elegans
ENSXMAG00000007369	sf3b1	100	93.692	ENSCJAG00000003902	SF3B1	100	93.394	Callithrix_jacchus
ENSXMAG00000007369	sf3b1	100	93.692	ENSCAFG00000010826	SF3B1	100	93.394	Canis_familiaris
ENSXMAG00000007369	sf3b1	100	93.692	ENSCAFG00020004750	SF3B1	100	93.394	Canis_lupus_dingo
ENSXMAG00000007369	sf3b1	100	93.692	ENSCHIG00000015226	SF3B1	100	93.394	Capra_hircus
ENSXMAG00000007369	sf3b1	100	93.615	ENSTSYG00000009214	SF3B1	100	93.318	Carlito_syrichta
ENSXMAG00000007369	sf3b1	99	93.519	ENSCAPG00000006547	SF3B1	99	93.222	Cavia_aperea
ENSXMAG00000007369	sf3b1	99	93.643	ENSCPOG00000009353	SF3B1	100	93.344	Cavia_porcellus
ENSXMAG00000007369	sf3b1	100	93.692	ENSCCAG00000020506	SF3B1	100	93.394	Cebus_capucinus
ENSXMAG00000007369	sf3b1	100	93.692	ENSCATG00000035735	SF3B1	100	93.394	Cercocebus_atys
ENSXMAG00000007369	sf3b1	99	93.648	ENSCLAG00000014767	SF3B1	99	93.349	Chinchilla_lanigera
ENSXMAG00000007369	sf3b1	100	93.692	ENSCSAG00000011505	SF3B1	100	93.394	Chlorocebus_sabaeus
ENSXMAG00000007369	sf3b1	76	92.474	ENSCHOG00000009860	SF3B1	76	92.474	Choloepus_hoffmanni
ENSXMAG00000007369	sf3b1	100	93.991	ENSCPBG00000021902	SF3B1	99	94.865	Chrysemys_picta_bellii
ENSXMAG00000007369	sf3b1	69	78.299	ENSCING00000002558	-	99	78.738	Ciona_intestinalis
ENSXMAG00000007369	sf3b1	99	80.135	ENSCSAVG00000002559	-	99	80.135	Ciona_savignyi
ENSXMAG00000007369	sf3b1	100	93.692	ENSCANG00000029415	SF3B1	100	93.394	Colobus_angolensis_palliatus
ENSXMAG00000007369	sf3b1	100	93.692	ENSCGRG00001016990	Sf3b1	100	93.394	Cricetulus_griseus_chok1gshd
ENSXMAG00000007369	sf3b1	100	93.692	ENSCGRG00000005301	Sf3b1	100	93.394	Cricetulus_griseus_crigri
ENSXMAG00000007369	sf3b1	100	93.992	ENSCSEG00000003860	sf3b1	100	93.992	Cynoglossus_semilaevis
ENSXMAG00000007369	sf3b1	97	99.446	ENSCVAG00000003680	sf3b1	99	99.446	Cyprinodon_variegatus
ENSXMAG00000007369	sf3b1	100	96.274	ENSDARG00000056138	sf3b1	100	96.274	Danio_rerio
ENSXMAG00000007369	sf3b1	100	93.620	ENSDNOG00000011754	SF3B1	100	93.323	Dasypus_novemcinctus
ENSXMAG00000007369	sf3b1	99	91.705	ENSDORG00000002399	Sf3b1	100	91.354	Dipodomys_ordii
ENSXMAG00000007369	sf3b1	100	75.778	FBgn0031266	Sf3b1	100	75.640	Drosophila_melanogaster
ENSXMAG00000007369	sf3b1	84	92.209	ENSETEG00000009188	SF3B1	100	92.209	Echinops_telfairi
ENSXMAG00000007369	sf3b1	99	86.244	ENSEBUG00000004325	sf3b1	100	88.276	Eptatretus_burgeri
ENSXMAG00000007369	sf3b1	100	93.692	ENSEASG00005020159	SF3B1	98	93.394	Equus_asinus_asinus
ENSXMAG00000007369	sf3b1	100	93.692	ENSECAG00000021657	SF3B1	98	93.394	Equus_caballus
ENSXMAG00000007369	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSXMAG00000007369	sf3b1	100	96.098	ENSELUG00000005977	sf3b1	98	95.997	Esox_lucius
ENSXMAG00000007369	sf3b1	100	93.692	ENSFCAG00000005038	SF3B1	100	93.394	Felis_catus
ENSXMAG00000007369	sf3b1	99	93.949	ENSFALG00000004281	SF3B1	99	93.645	Ficedula_albicollis
ENSXMAG00000007369	sf3b1	100	93.692	ENSFDAG00000017510	SF3B1	100	93.394	Fukomys_damarensis
ENSXMAG00000007369	sf3b1	100	98.327	ENSFHEG00000014333	sf3b1	100	98.327	Fundulus_heteroclitus
ENSXMAG00000007369	sf3b1	100	95.696	ENSGMOG00000006773	sf3b1	100	95.979	Gadus_morhua
ENSXMAG00000007369	sf3b1	100	93.991	ENSGALG00000008038	SF3B1	100	93.764	Gallus_gallus
ENSXMAG00000007369	sf3b1	100	99.465	ENSGAFG00000000704	sf3b1	100	99.691	Gambusia_affinis
ENSXMAG00000007369	sf3b1	100	97.154	ENSGACG00000008839	sf3b1	100	97.039	Gasterosteus_aculeatus
ENSXMAG00000007369	sf3b1	100	93.344	ENSGAGG00000017478	SF3B1	100	93.127	Gopherus_agassizii
ENSXMAG00000007369	sf3b1	99	88.527	ENSGGOG00000009264	SF3B1	99	88.408	Gorilla_gorilla
ENSXMAG00000007369	sf3b1	100	97.381	ENSHBUG00000007705	sf3b1	99	97.411	Haplochromis_burtoni
ENSXMAG00000007369	sf3b1	99	93.648	ENSHGLG00000008285	-	99	93.349	Heterocephalus_glaber_female
ENSXMAG00000007369	sf3b1	99	91.634	ENSHGLG00100005535	-	99	91.361	Heterocephalus_glaber_male
ENSXMAG00000007369	sf3b1	100	97.471	ENSHCOG00000016775	sf3b1	100	97.352	Hippocampus_comes
ENSXMAG00000007369	sf3b1	100	96.733	ENSIPUG00000013171	sf3b1	100	96.733	Ictalurus_punctatus
ENSXMAG00000007369	sf3b1	100	93.692	ENSSTOG00000011034	SF3B1	100	93.394	Ictidomys_tridecemlineatus
ENSXMAG00000007369	sf3b1	99	93.624	ENSJJAG00000010903	Sf3b1	99	93.323	Jaculus_jaculus
ENSXMAG00000007369	sf3b1	100	97.726	ENSKMAG00000004009	sf3b1	100	97.726	Kryptolebias_marmoratus
ENSXMAG00000007369	sf3b1	100	97.304	ENSLBEG00000022208	sf3b1	100	97.186	Labrus_bergylta
ENSXMAG00000007369	sf3b1	99	90.454	ENSLACG00000014832	SF3B1	99	90.350	Latimeria_chalumnae
ENSXMAG00000007369	sf3b1	100	95.556	ENSLOCG00000003899	sf3b1	100	95.310	Lepisosteus_oculatus
ENSXMAG00000007369	sf3b1	100	93.692	ENSLAFG00000001956	SF3B1	100	93.394	Loxodonta_africana
ENSXMAG00000007369	sf3b1	99	93.648	ENSMMUG00000022430	SF3B1	99	93.349	Macaca_mulatta
ENSXMAG00000007369	sf3b1	100	93.692	ENSMNEG00000042333	SF3B1	100	94.692	Macaca_nemestrina
ENSXMAG00000007369	sf3b1	94	88.971	ENSMLEG00000026141	SF3B1	98	88.567	Mandrillus_leucophaeus
ENSXMAG00000007369	sf3b1	100	98.382	ENSMAMG00000010241	sf3b1	100	98.327	Mastacembelus_armatus
ENSXMAG00000007369	sf3b1	100	97.381	ENSMZEG00005021254	sf3b1	100	97.338	Maylandia_zebra
ENSXMAG00000007369	sf3b1	99	93.328	ENSMGAG00000007017	SF3B1	99	93.109	Meleagris_gallopavo
ENSXMAG00000007369	sf3b1	99	89.388	ENSMAUG00000009071	Sf3b1	99	89.144	Mesocricetus_auratus
ENSXMAG00000007369	sf3b1	100	93.692	ENSMICG00000013879	SF3B1	100	93.394	Microcebus_murinus
ENSXMAG00000007369	sf3b1	99	89.319	ENSMOCG00000000455	Sf3b1	99	89.076	Microtus_ochrogaster
ENSXMAG00000007369	sf3b1	85	97.818	ENSMMOG00000000475	sf3b1	100	97.818	Mola_mola
ENSXMAG00000007369	sf3b1	100	93.154	ENSMODG00000012275	SF3B1	100	92.938	Monodelphis_domestica
ENSXMAG00000007369	sf3b1	100	98.251	ENSMALG00000017211	sf3b1	100	98.251	Monopterus_albus
ENSXMAG00000007369	sf3b1	100	93.692	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.394	Mus_caroli
ENSXMAG00000007369	sf3b1	100	93.692	ENSMUSG00000025982	Sf3b1	100	93.394	Mus_musculus
ENSXMAG00000007369	sf3b1	100	93.692	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.394	Mus_spretus
ENSXMAG00000007369	sf3b1	100	93.692	ENSMPUG00000007799	SF3B1	100	93.394	Mustela_putorius_furo
ENSXMAG00000007369	sf3b1	100	92.538	ENSMLUG00000000840	SF3B1	100	92.255	Myotis_lucifugus
ENSXMAG00000007369	sf3b1	99	93.364	ENSNGAG00000021884	-	100	93.069	Nannospalax_galili
ENSXMAG00000007369	sf3b1	100	92.413	ENSNBRG00000015816	sf3b1	100	92.477	Neolamprologus_brichardi
ENSXMAG00000007369	sf3b1	100	93.692	ENSNLEG00000006861	SF3B1	100	93.394	Nomascus_leucogenys
ENSXMAG00000007369	sf3b1	70	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSXMAG00000007369	sf3b1	100	81.038	ENSOPRG00000008596	SF3B1	100	81.055	Ochotona_princeps
ENSXMAG00000007369	sf3b1	100	93.692	ENSODEG00000011153	-	100	93.394	Octodon_degus
ENSXMAG00000007369	sf3b1	100	97.381	ENSONIG00000013758	sf3b1	100	97.338	Oreochromis_niloticus
ENSXMAG00000007369	sf3b1	83	95.810	ENSOCUG00000012722	-	96	95.417	Oryctolagus_cuniculus
ENSXMAG00000007369	sf3b1	100	98.175	ENSORLG00000020219	sf3b1	100	98.175	Oryzias_latipes
ENSXMAG00000007369	sf3b1	100	98.175	ENSORLG00020001746	sf3b1	100	98.175	Oryzias_latipes_hni
ENSXMAG00000007369	sf3b1	65	96.801	ENSORLG00015001759	sf3b1	98	96.801	Oryzias_latipes_hsok
ENSXMAG00000007369	sf3b1	100	98.403	ENSOMEG00000019231	sf3b1	100	98.403	Oryzias_melastigma
ENSXMAG00000007369	sf3b1	50	72.952	ENSOGAG00000000267	-	100	72.952	Otolemur_garnettii
ENSXMAG00000007369	sf3b1	100	93.692	ENSOARG00000015374	SF3B1	100	93.394	Ovis_aries
ENSXMAG00000007369	sf3b1	100	93.692	ENSPPAG00000035007	SF3B1	100	93.394	Pan_paniscus
ENSXMAG00000007369	sf3b1	100	93.692	ENSPPRG00000009090	SF3B1	100	93.394	Panthera_pardus
ENSXMAG00000007369	sf3b1	100	93.692	ENSPTIG00000021557	SF3B1	100	93.394	Panthera_tigris_altaica
ENSXMAG00000007369	sf3b1	99	86.321	ENSPTRG00000012771	SF3B1	99	86.117	Pan_troglodytes
ENSXMAG00000007369	sf3b1	100	93.692	ENSPANG00000013417	SF3B1	100	93.394	Papio_anubis
ENSXMAG00000007369	sf3b1	100	96.234	ENSPKIG00000000784	sf3b1	100	95.903	Paramormyrops_kingsleyae
ENSXMAG00000007369	sf3b1	99	92.702	ENSPSIG00000017222	SF3B1	98	92.490	Pelodiscus_sinensis
ENSXMAG00000007369	sf3b1	92	97.481	ENSPMGG00000004330	sf3b1	99	97.481	Periophthalmus_magnuspinnatus
ENSXMAG00000007369	sf3b1	99	93.648	ENSPEMG00000010699	Sf3b1	100	93.349	Peromyscus_maniculatus_bairdii
ENSXMAG00000007369	sf3b1	100	89.280	ENSPMAG00000001311	sf3b1	100	89.191	Petromyzon_marinus
ENSXMAG00000007369	sf3b1	100	93.154	ENSPCIG00000010642	SF3B1	100	92.938	Phascolarctos_cinereus
ENSXMAG00000007369	sf3b1	100	99.620	ENSPFOG00000000073	sf3b1	100	99.620	Poecilia_formosa
ENSXMAG00000007369	sf3b1	100	99.620	ENSPLAG00000002293	sf3b1	100	99.620	Poecilia_latipinna
ENSXMAG00000007369	sf3b1	100	99.696	ENSPMEG00000000446	sf3b1	98	99.696	Poecilia_mexicana
ENSXMAG00000007369	sf3b1	100	99.696	ENSPREG00000019652	sf3b1	100	99.696	Poecilia_reticulata
ENSXMAG00000007369	sf3b1	100	92.948	ENSPPYG00000013044	SF3B1	95	96.768	Pongo_abelii
ENSXMAG00000007369	sf3b1	100	93.538	ENSPCAG00000009292	SF3B1	100	93.242	Procavia_capensis
ENSXMAG00000007369	sf3b1	100	93.692	ENSPCOG00000024074	SF3B1	100	93.394	Propithecus_coquereli
ENSXMAG00000007369	sf3b1	100	93.692	ENSPVAG00000008302	SF3B1	100	93.394	Pteropus_vampyrus
ENSXMAG00000007369	sf3b1	100	97.304	ENSPNYG00000014939	sf3b1	100	97.262	Pundamilia_nyererei
ENSXMAG00000007369	sf3b1	100	96.887	ENSPNAG00000008288	sf3b1	100	96.887	Pygocentrus_nattereri
ENSXMAG00000007369	sf3b1	100	93.692	ENSRNOG00000013516	Sf3b1	100	93.394	Rattus_norvegicus
ENSXMAG00000007369	sf3b1	99	89.908	ENSRBIG00000026096	SF3B1	100	89.658	Rhinopithecus_bieti
ENSXMAG00000007369	sf3b1	100	93.692	ENSRROG00000031308	SF3B1	100	93.394	Rhinopithecus_roxellana
ENSXMAG00000007369	sf3b1	100	93.692	ENSSBOG00000020080	SF3B1	100	93.394	Saimiri_boliviensis_boliviensis
ENSXMAG00000007369	sf3b1	100	93.154	ENSSHAG00000017564	SF3B1	100	92.938	Sarcophilus_harrisii
ENSXMAG00000007369	sf3b1	100	96.536	ENSSFOG00015021535	sf3b1	100	96.353	Scleropages_formosus
ENSXMAG00000007369	sf3b1	100	97.623	ENSSMAG00000013977	sf3b1	99	97.496	Scophthalmus_maximus
ENSXMAG00000007369	sf3b1	100	98.536	ENSSDUG00000017422	sf3b1	100	98.479	Seriola_dumerili
ENSXMAG00000007369	sf3b1	100	98.613	ENSSLDG00000019495	sf3b1	100	98.555	Seriola_lalandi_dorsalis
ENSXMAG00000007369	sf3b1	75	98.592	ENSSARG00000007016	SF3B1	75	98.592	Sorex_araneus
ENSXMAG00000007369	sf3b1	100	93.683	ENSSPUG00000000410	SF3B1	100	93.460	Sphenodon_punctatus
ENSXMAG00000007369	sf3b1	100	98.403	ENSSPAG00000010451	sf3b1	99	98.403	Stegastes_partitus
ENSXMAG00000007369	sf3b1	92	93.012	ENSSSCG00000016075	SF3B1	100	94.692	Sus_scrofa
ENSXMAG00000007369	sf3b1	100	93.991	ENSTGUG00000010553	SF3B1	100	93.764	Taeniopygia_guttata
ENSXMAG00000007369	sf3b1	100	97.795	ENSTRUG00000015534	sf3b1	100	97.795	Takifugu_rubripes
ENSXMAG00000007369	sf3b1	85	97.004	ENSTBEG00000008714	SF3B1	93	97.004	Tupaia_belangeri
ENSXMAG00000007369	sf3b1	92	93.669	ENSTTRG00000003414	SF3B1	92	93.173	Tursiops_truncatus
ENSXMAG00000007369	sf3b1	94	83.442	ENSUAMG00000018506	SF3B1	99	97.571	Ursus_americanus
ENSXMAG00000007369	sf3b1	100	93.692	ENSUMAG00000020945	SF3B1	100	93.394	Ursus_maritimus
ENSXMAG00000007369	sf3b1	95	93.651	ENSVPAG00000005798	SF3B1	96	93.268	Vicugna_pacos
ENSXMAG00000007369	sf3b1	100	93.692	ENSVVUG00000025948	SF3B1	95	93.394	Vulpes_vulpes
ENSXMAG00000007369	sf3b1	100	92.308	ENSXETG00000013339	sf3b1	100	92.103	Xenopus_tropicalis
ENSXMAG00000007369	sf3b1	100	97.171	ENSXCOG00000018086	sf3b1	100	97.477	Xiphophorus_couchianus