EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000007627 (Gene tree)
Gene ID: 102227475
Gene Symbol: srrt
Alias: CHUNP6881|ars2|zgc:92060
Full Name: serrate%2C RNA effector molecule
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 14762 bases
Position: chr11:20654204-20668965
Accession: 102227475
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000007662	ARS2	PF04959.13	7.3e-89	1	1
ENSXMAP00000028655	ARS2	PF04959.13	7.3e-89	1	1
ENSXMAP00000026529	ARS2	PF04959.13	7.2e-87	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000032215	-	4696	XM_023342395	ENSXMAP00000028655	877 (aa)	XP_023198163	UPI000293951E
ENSXMAT00000007670	-	3177	XM_023342397	ENSXMAP00000007662	877 (aa)	XP_023198165	M3ZZL8
ENSXMAT00000032437	-	2424	-	ENSXMAP00000026529	807 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000007627's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000007627's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000007627	srrt	90	75.325	ENSG00000087087	SRRT	98	85.484	Homo_sapiens
ENSXMAG00000007627	srrt	95	89.298	ENSAPOG00000002304	srrt	98	89.559	Acanthochromis_polyacanthus
ENSXMAG00000007627	srrt	85	76.096	ENSAMEG00000014506	SRRT	77	76.096	Ailuropoda_melanoleuca
ENSXMAG00000007627	srrt	95	86.176	ENSACIG00000015795	srrt	98	91.028	Amphilophus_citrinellus
ENSXMAG00000007627	srrt	86	66.667	ENSAOCG00000009189	-	96	58.016	Amphiprion_ocellaris
ENSXMAG00000007627	srrt	95	89.392	ENSAOCG00000009693	srrt	98	89.651	Amphiprion_ocellaris
ENSXMAG00000007627	srrt	86	66.667	ENSAPEG00000020016	-	96	58.016	Amphiprion_percula
ENSXMAG00000007627	srrt	95	88.677	ENSAPEG00000003646	srrt	98	88.953	Amphiprion_percula
ENSXMAG00000007627	srrt	95	86.738	ENSATEG00000014425	srrt	98	86.946	Anabas_testudineus
ENSXMAG00000007627	srrt	58	65.000	ENSATEG00000003652	-	85	67.672	Anabas_testudineus
ENSXMAG00000007627	srrt	95	65.517	ENSACAG00000001014	SRRT	98	65.197	Anolis_carolinensis
ENSXMAG00000007627	srrt	90	75.054	ENSANAG00000031718	SRRT	80	75.054	Aotus_nancymaae
ENSXMAG00000007627	srrt	83	65.254	ENSACLG00000009423	-	96	57.523	Astatotilapia_calliptera
ENSXMAG00000007627	srrt	95	86.635	ENSACLG00000013156	srrt	94	87.660	Astatotilapia_calliptera
ENSXMAG00000007627	srrt	89	80.752	ENSAMXG00000016671	srrt	95	72.643	Astyanax_mexicanus
ENSXMAG00000007627	srrt	90	74.624	ENSBTAG00000001134	SRRT	96	63.837	Bos_taurus
ENSXMAG00000007627	srrt	70	41.426	WBGene00017085	E01A2.2	85	42.616	Caenorhabditis_elegans
ENSXMAG00000007627	srrt	90	74.409	ENSCJAG00000014917	SRRT	80	74.839	Callithrix_jacchus
ENSXMAG00000007627	srrt	85	74.839	ENSCAFG00000023538	SRRT	80	74.839	Canis_familiaris
ENSXMAG00000007627	srrt	98	63.523	ENSCAFG00020013358	SRRT	79	75.108	Canis_lupus_dingo
ENSXMAG00000007627	srrt	93	74.946	ENSCHIG00000010495	SRRT	87	74.946	Capra_hircus
ENSXMAG00000007627	srrt	85	75.108	ENSTSYG00000036426	SRRT	83	75.108	Carlito_syrichta
ENSXMAG00000007627	srrt	86	75.658	ENSCAPG00000013586	SRRT	89	70.886	Cavia_aperea
ENSXMAG00000007627	srrt	87	74.090	ENSCPOG00000001739	SRRT	80	74.464	Cavia_porcellus
ENSXMAG00000007627	srrt	90	75.054	ENSCCAG00000015877	SRRT	80	75.054	Cebus_capucinus
ENSXMAG00000007627	srrt	93	73.362	ENSCATG00000036306	SRRT	80	74.839	Cercocebus_atys
ENSXMAG00000007627	srrt	96	65.693	ENSCLAG00000007568	SRRT	89	71.306	Chinchilla_lanigera
ENSXMAG00000007627	srrt	56	75.054	ENSCSAG00000017996	SRRT	80	75.054	Chlorocebus_sabaeus
ENSXMAG00000007627	srrt	55	74.074	ENSCHOG00000007815	SRRT	62	73.529	Choloepus_hoffmanni
ENSXMAG00000007627	srrt	95	53.129	ENSCPBG00000011553	SRRT	81	73.600	Chrysemys_picta_bellii
ENSXMAG00000007627	srrt	100	42.536	ENSCING00000003506	-	86	43.857	Ciona_intestinalis
ENSXMAG00000007627	srrt	100	46.593	ENSCSAVG00000008394	-	81	56.447	Ciona_savignyi
ENSXMAG00000007627	srrt	56	75.325	ENSCANG00000034556	SRRT	79	75.325	Colobus_angolensis_palliatus
ENSXMAG00000007627	srrt	96	63.837	ENSCGRG00001001594	Srrt	96	64.252	Cricetulus_griseus_chok1gshd
ENSXMAG00000007627	srrt	91	80.392	ENSCGRG00000007292	Srrt	89	71.306	Cricetulus_griseus_crigri
ENSXMAG00000007627	srrt	98	78.834	ENSCSEG00000017878	srrt	98	77.560	Cynoglossus_semilaevis
ENSXMAG00000007627	srrt	52	64.744	ENSCSEG00000005233	-	54	65.359	Cynoglossus_semilaevis
ENSXMAG00000007627	srrt	95	91.766	ENSCVAG00000019848	srrt	98	91.851	Cyprinodon_variegatus
ENSXMAG00000007627	srrt	89	56.177	ENSCVAG00000017344	-	96	56.416	Cyprinodon_variegatus
ENSXMAG00000007627	srrt	86	87.013	ENSDARG00000017762	srrt	98	77.283	Danio_rerio
ENSXMAG00000007627	srrt	85	75.054	ENSDNOG00000003851	SRRT	96	64.419	Dasypus_novemcinctus
ENSXMAG00000007627	srrt	56	75.108	ENSDORG00000005584	Srrt	89	72.354	Dipodomys_ordii
ENSXMAG00000007627	srrt	90	51.489	FBgn0033062	Ars2	69	52.991	Drosophila_melanogaster
ENSXMAG00000007627	srrt	80	72.727	ENSETEG00000016175	SRRT	71	72.727	Echinops_telfairi
ENSXMAG00000007627	srrt	76	55.395	ENSEBUG00000008517	-	88	55.089	Eptatretus_burgeri
ENSXMAG00000007627	srrt	95	75.054	ENSEASG00005016956	SRRT	96	64.129	Equus_asinus_asinus
ENSXMAG00000007627	srrt	95	75.054	ENSECAG00000012292	SRRT	96	64.129	Equus_caballus
ENSXMAG00000007627	srrt	81	77.083	ENSEEUG00000009117	SRRT	66	82.432	Erinaceus_europaeus
ENSXMAG00000007627	srrt	88	86.694	ENSELUG00000006651	srrt	78	85.156	Esox_lucius
ENSXMAG00000007627	srrt	85	67.078	ENSELUG00000021216	-	79	68.008	Esox_lucius
ENSXMAG00000007627	srrt	85	75.054	ENSFCAG00000006855	SRRT	96	63.783	Felis_catus
ENSXMAG00000007627	srrt	52	51.613	ENSFALG00000007524	-	77	68.519	Ficedula_albicollis
ENSXMAG00000007627	srrt	56	71.711	ENSFDAG00000021347	SRRT	88	69.469	Fukomys_damarensis
ENSXMAG00000007627	srrt	58	57.350	ENSFHEG00000004105	-	93	57.537	Fundulus_heteroclitus
ENSXMAG00000007627	srrt	95	79.112	ENSFHEG00000002756	srrt	93	95.238	Fundulus_heteroclitus
ENSXMAG00000007627	srrt	65	66.817	ENSGMOG00000018694	-	85	78.261	Gadus_morhua
ENSXMAG00000007627	srrt	96	74.733	ENSGMOG00000018619	srrt	80	79.921	Gadus_morhua
ENSXMAG00000007627	srrt	100	97.719	ENSGAFG00000005423	srrt	100	97.719	Gambusia_affinis
ENSXMAG00000007627	srrt	92	55.019	ENSGAFG00000020383	-	54	63.913	Gambusia_affinis
ENSXMAG00000007627	srrt	84	64.904	ENSGACG00000001100	-	80	63.261	Gasterosteus_aculeatus
ENSXMAG00000007627	srrt	96	84.298	ENSGACG00000020387	srrt	98	83.410	Gasterosteus_aculeatus
ENSXMAG00000007627	srrt	95	75.325	ENSGGOG00000001508	SRRT	79	75.325	Gorilla_gorilla
ENSXMAG00000007627	srrt	95	86.754	ENSHBUG00000002942	srrt	94	87.776	Haplochromis_burtoni
ENSXMAG00000007627	srrt	96	63.972	ENSHGLG00000008344	Srrt	89	71.092	Heterocephalus_glaber_female
ENSXMAG00000007627	srrt	96	64.344	ENSHGLG00100018857	Srrt	89	71.861	Heterocephalus_glaber_male
ENSXMAG00000007627	srrt	92	56.596	ENSHCOG00000008904	-	93	64.018	Hippocampus_comes
ENSXMAG00000007627	srrt	98	82.284	ENSHCOG00000005403	srrt	98	81.214	Hippocampus_comes
ENSXMAG00000007627	srrt	87	80.694	ENSIPUG00000021150	srrt	98	74.253	Ictalurus_punctatus
ENSXMAG00000007627	srrt	96	62.673	ENSSTOG00000013776	SRRT	96	64.186	Ictidomys_tridecemlineatus
ENSXMAG00000007627	srrt	96	64.437	ENSJJAG00000010446	Srrt	89	72.294	Jaculus_jaculus
ENSXMAG00000007627	srrt	52	64.780	ENSKMAG00000008468	-	96	57.439	Kryptolebias_marmoratus
ENSXMAG00000007627	srrt	95	86.461	ENSKMAG00000013599	srrt	98	86.790	Kryptolebias_marmoratus
ENSXMAG00000007627	srrt	55	65.347	ENSLBEG00000028983	-	97	52.673	Labrus_bergylta
ENSXMAG00000007627	srrt	98	83.413	ENSLBEG00000016308	srrt	86	94.382	Labrus_bergylta
ENSXMAG00000007627	srrt	95	56.667	ENSLACG00000001089	SRRT	53	58.568	Latimeria_chalumnae
ENSXMAG00000007627	srrt	91	55.893	ENSLOCG00000013658	srrt	76	82.500	Lepisosteus_oculatus
ENSXMAG00000007627	srrt	85	75.269	ENSLAFG00000007725	SRRT	96	62.529	Loxodonta_africana
ENSXMAG00000007627	srrt	94	73.573	ENSMFAG00000033745	SRRT	83	73.573	Macaca_fascicularis
ENSXMAG00000007627	srrt	90	73.573	ENSMMUG00000021255	SRRT	96	62.959	Macaca_mulatta
ENSXMAG00000007627	srrt	93	73.573	ENSMNEG00000041864	SRRT	80	75.054	Macaca_nemestrina
ENSXMAG00000007627	srrt	95	73.573	ENSMLEG00000029479	SRRT	82	73.573	Mandrillus_leucophaeus
ENSXMAG00000007627	srrt	92	67.308	ENSMAMG00000010681	-	88	67.888	Mastacembelus_armatus
ENSXMAG00000007627	srrt	95	86.977	ENSMAMG00000014311	srrt	98	86.830	Mastacembelus_armatus
ENSXMAG00000007627	srrt	83	65.466	ENSMZEG00005028002	-	96	57.639	Maylandia_zebra
ENSXMAG00000007627	srrt	95	86.754	ENSMZEG00005016135	srrt	94	87.776	Maylandia_zebra
ENSXMAG00000007627	srrt	85	74.624	ENSMAUG00000011386	Srrt	89	71.277	Mesocricetus_auratus
ENSXMAG00000007627	srrt	92	73.784	ENSMICG00000009471	SRRT	82	73.784	Microcebus_murinus
ENSXMAG00000007627	srrt	56	75.054	ENSMOCG00000001971	Srrt	89	72.258	Microtus_ochrogaster
ENSXMAG00000007627	srrt	76	67.094	ENSMMOG00000011137	-	82	66.667	Mola_mola
ENSXMAG00000007627	srrt	56	70.940	ENSMODG00000004862	SRRT	89	71.368	Monodelphis_domestica
ENSXMAG00000007627	srrt	89	83.682	ENSMALG00000018604	srrt	99	77.458	Monopterus_albus
ENSXMAG00000007627	srrt	68	47.110	ENSMALG00000005567	-	84	54.746	Monopterus_albus
ENSXMAG00000007627	srrt	96	65.176	MGP_CAROLIEiJ_G0027870	Srrt	100	72.491	Mus_caroli
ENSXMAG00000007627	srrt	96	65.176	ENSMUSG00000037364	Srrt	99	72.491	Mus_musculus
ENSXMAG00000007627	srrt	56	76.096	MGP_PahariEiJ_G0024456	Srrt	100	72.491	Mus_pahari
ENSXMAG00000007627	srrt	96	65.176	MGP_SPRETEiJ_G0028875	Srrt	100	72.491	Mus_spretus
ENSXMAG00000007627	srrt	95	75.054	ENSMPUG00000015839	SRRT	96	64.037	Mustela_putorius_furo
ENSXMAG00000007627	srrt	90	74.839	ENSMLUG00000009975	SRRT	96	64.186	Myotis_lucifugus
ENSXMAG00000007627	srrt	96	64.651	ENSNGAG00000023715	Srrt	81	75.410	Nannospalax_galili
ENSXMAG00000007627	srrt	98	85.349	ENSNBRG00000019100	srrt	98	85.930	Neolamprologus_brichardi
ENSXMAG00000007627	srrt	56	65.198	ENSNLEG00000011987	SRRT	82	71.429	Nomascus_leucogenys
ENSXMAG00000007627	srrt	89	60.991	ENSMEUG00000011941	SRRT	96	53.918	Notamacropus_eugenii
ENSXMAG00000007627	srrt	67	73.485	ENSOPRG00000002502	-	67	75.000	Ochotona_princeps
ENSXMAG00000007627	srrt	56	75.877	ENSODEG00000016856	SRRT	89	72.078	Octodon_degus
ENSXMAG00000007627	srrt	95	85.221	ENSONIG00000004242	srrt	98	84.354	Oreochromis_niloticus
ENSXMAG00000007627	srrt	93	57.245	ENSONIG00000016080	-	94	58.216	Oreochromis_niloticus
ENSXMAG00000007627	srrt	98	85.082	ENSORLG00000008120	srrt	98	84.615	Oryzias_latipes
ENSXMAG00000007627	srrt	98	84.848	ENSORLG00020003058	srrt	98	84.382	Oryzias_latipes_hni
ENSXMAG00000007627	srrt	98	84.732	ENSORLG00015008062	srrt	98	84.266	Oryzias_latipes_hsok
ENSXMAG00000007627	srrt	93	58.263	ENSOMEG00000006963	-	96	57.665	Oryzias_melastigma
ENSXMAG00000007627	srrt	98	85.781	ENSOMEG00000003155	srrt	98	85.198	Oryzias_melastigma
ENSXMAG00000007627	srrt	56	75.054	ENSOGAG00000017242	SRRT	96	64.336	Otolemur_garnettii
ENSXMAG00000007627	srrt	90	74.892	ENSOARG00000015645	SRRT	96	64.144	Ovis_aries
ENSXMAG00000007627	srrt	93	71.519	ENSPPAG00000041090	SRRT	80	75.325	Pan_paniscus
ENSXMAG00000007627	srrt	85	75.108	ENSPPRG00000009557	SRRT	96	63.773	Panthera_pardus
ENSXMAG00000007627	srrt	85	75.054	ENSPTIG00000014355	SRRT	96	64.120	Panthera_tigris_altaica
ENSXMAG00000007627	srrt	56	75.325	ENSPTRG00000019511	SRRT	80	75.325	Pan_troglodytes
ENSXMAG00000007627	srrt	92	73.573	ENSPANG00000020763	SRRT	80	73.573	Papio_anubis
ENSXMAG00000007627	srrt	98	73.295	ENSPKIG00000005434	srrt	98	73.499	Paramormyrops_kingsleyae
ENSXMAG00000007627	srrt	86	79.476	ENSPKIG00000022212	-	98	71.247	Paramormyrops_kingsleyae
ENSXMAG00000007627	srrt	85	75.492	ENSPSIG00000016311	SRRT	98	65.585	Pelodiscus_sinensis
ENSXMAG00000007627	srrt	98	80.373	ENSPMGG00000002841	srrt	56	86.853	Periophthalmus_magnuspinnatus
ENSXMAG00000007627	srrt	96	65.176	ENSPEMG00000010834	Srrt	96	65.533	Peromyscus_maniculatus_bairdii
ENSXMAG00000007627	srrt	96	55.368	ENSPMAG00000009614	-	81	63.713	Petromyzon_marinus
ENSXMAG00000007627	srrt	89	72.591	ENSPCIG00000000816	SRRT	96	63.679	Phascolarctos_cinereus
ENSXMAG00000007627	srrt	100	97.950	ENSPFOG00000005704	srrt	100	97.950	Poecilia_formosa
ENSXMAG00000007627	srrt	92	56.122	ENSPFOG00000016554	-	54	65.293	Poecilia_formosa
ENSXMAG00000007627	srrt	92	56.186	ENSPLAG00000004526	-	55	64.935	Poecilia_latipinna
ENSXMAG00000007627	srrt	100	96.167	ENSPLAG00000021992	srrt	100	96.167	Poecilia_latipinna
ENSXMAG00000007627	srrt	100	97.494	ENSPMEG00000001182	srrt	100	97.494	Poecilia_mexicana
ENSXMAG00000007627	srrt	87	55.660	ENSPMEG00000001520	-	52	65.258	Poecilia_mexicana
ENSXMAG00000007627	srrt	100	97.836	ENSPREG00000022308	srrt	100	97.836	Poecilia_reticulata
ENSXMAG00000007627	srrt	56	57.576	ENSPPYG00000017432	SRRT	78	73.932	Pongo_abelii
ENSXMAG00000007627	srrt	86	73.150	ENSPCAG00000001621	SRRT	80	73.820	Procavia_capensis
ENSXMAG00000007627	srrt	90	75.325	ENSPCOG00000025751	SRRT	80	75.054	Propithecus_coquereli
ENSXMAG00000007627	srrt	70	66.882	ENSPVAG00000000834	SRRT	90	66.882	Pteropus_vampyrus
ENSXMAG00000007627	srrt	95	86.635	ENSPNYG00000018710	srrt	98	87.660	Pundamilia_nyererei
ENSXMAG00000007627	srrt	78	89.241	ENSPNAG00000010629	srrt	72	87.293	Pygocentrus_nattereri
ENSXMAG00000007627	srrt	56	65.359	ENSRNOG00000048277	AABR07035787.1	92	65.721	Rattus_norvegicus
ENSXMAG00000007627	srrt	93	73.573	ENSRBIG00000035718	SRRT	80	75.054	Rhinopithecus_bieti
ENSXMAG00000007627	srrt	93	73.573	ENSRROG00000030622	SRRT	80	75.054	Rhinopithecus_roxellana
ENSXMAG00000007627	srrt	90	75.325	ENSSBOG00000033570	SRRT	80	75.325	Saimiri_boliviensis_boliviensis
ENSXMAG00000007627	srrt	72	60.890	ENSSHAG00000007349	-	74	72.281	Sarcophilus_harrisii
ENSXMAG00000007627	srrt	88	82.675	ENSSFOG00015017293	srrt	98	76.773	Scleropages_formosus
ENSXMAG00000007627	srrt	56	64.363	ENSSMAG00000018195	-	57	64.795	Scophthalmus_maximus
ENSXMAG00000007627	srrt	95	87.694	ENSSMAG00000015342	srrt	98	87.995	Scophthalmus_maximus
ENSXMAG00000007627	srrt	57	55.789	ENSSDUG00000002051	-	93	57.082	Seriola_dumerili
ENSXMAG00000007627	srrt	95	89.725	ENSSDUG00000012049	srrt	93	89.860	Seriola_dumerili
ENSXMAG00000007627	srrt	95	82.793	ENSSLDG00000017477	srrt	98	83.597	Seriola_lalandi_dorsalis
ENSXMAG00000007627	srrt	95	88.124	ENSSPAG00000005665	srrt	96	88.297	Stegastes_partitus
ENSXMAG00000007627	srrt	75	65.937	ENSSPAG00000018943	-	95	58.012	Stegastes_partitus
ENSXMAG00000007627	srrt	54	74.041	ENSSSCG00000024789	SRRT	81	74.041	Sus_scrofa
ENSXMAG00000007627	srrt	82	62.955	ENSTRUG00000000023	-	79	63.983	Takifugu_rubripes
ENSXMAG00000007627	srrt	98	81.040	ENSTRUG00000016075	srrt	98	80.809	Takifugu_rubripes
ENSXMAG00000007627	srrt	93	54.358	ENSTNIG00000003111	-	80	63.226	Tetraodon_nigroviridis
ENSXMAG00000007627	srrt	74	75.862	ENSTNIG00000011779	srrt	82	83.932	Tetraodon_nigroviridis
ENSXMAG00000007627	srrt	64	77.401	ENSTBEG00000005212	SRRT	58	77.401	Tupaia_belangeri
ENSXMAG00000007627	srrt	95	74.839	ENSTTRG00000011104	SRRT	96	63.921	Tursiops_truncatus
ENSXMAG00000007627	srrt	85	75.054	ENSUAMG00000027997	SRRT	98	63.773	Ursus_americanus
ENSXMAG00000007627	srrt	85	75.054	ENSUMAG00000011295	SRRT	96	64.005	Ursus_maritimus
ENSXMAG00000007627	srrt	85	74.839	ENSVVUG00000023572	SRRT	80	74.839	Vulpes_vulpes
ENSXMAG00000007627	srrt	79	76.966	ENSXETG00000025124	srrt	74	78.652	Xenopus_tropicalis
ENSXMAG00000007627	srrt	59	51.553	ENSXCOG00000013105	-	91	53.680	Xiphophorus_couchianus
ENSXMAG00000007627	srrt	92	55.598	ENSXMAG00000002090	-	96	57.565	Xiphophorus_maculatus