EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000007822 (Gene tree)
Gene ID: 102234717
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 13005 bases
Position: chr14:4019200-4032204
Accession: 102234717
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000007850	KH_1	PF00013.29	3.6e-06	1	1
ENSXMAP00000026777	KH_1	PF00013.29	3.8e-06	1	1
ENSXMAP00000007850	zf-CCHC	PF00098.23	0.00054	1	1
ENSXMAP00000026777	zf-CCHC	PF00098.23	0.00056	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000007857	-	2803	-	ENSXMAP00000007850	650 (aa)	-	M4A056
ENSXMAT00000040861	-	3266	XM_014472080	ENSXMAP00000026777	676 (aa)	XP_014327566	UPI0006D910C1

Gene Model

Click here to download ENSXMAG00000007822's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000007822's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000007822	sf1	97	90.455	ENSAPOG00000012341	sf1	97	90.606	Acanthochromis_polyacanthus
ENSXMAG00000007822	sf1	61	79.426	ENSAMEG00000017828	SF1	58	83.113	Ailuropoda_melanoleuca
ENSXMAG00000007822	sf1	70	85.746	ENSACIG00000016514	sf1	66	85.777	Amphilophus_citrinellus
ENSXMAG00000007822	sf1	97	90.592	ENSAOCG00000010934	sf1	97	90.744	Amphiprion_ocellaris
ENSXMAG00000007822	sf1	97	90.592	ENSAPEG00000009498	sf1	97	90.744	Amphiprion_percula
ENSXMAG00000007822	sf1	70	89.693	ENSATEG00000001894	sf1	97	90.455	Anabas_testudineus
ENSXMAG00000007822	sf1	84	66.118	ENSANAG00000022607	-	88	74.394	Aotus_nancymaae
ENSXMAG00000007822	sf1	62	79.376	ENSANAG00000026664	-	89	83.113	Aotus_nancymaae
ENSXMAG00000007822	sf1	70	89.035	ENSACLG00000007633	sf1	97	85.973	Astatotilapia_calliptera
ENSXMAG00000007822	sf1	70	83.843	ENSAMXG00000003630	sf1	86	84.323	Astyanax_mexicanus
ENSXMAG00000007822	sf1	61	79.426	ENSBTAG00000001035	SF1	61	83.377	Bos_taurus
ENSXMAG00000007822	sf1	61	79.426	ENSCJAG00000002780	SF1	75	68.798	Callithrix_jacchus
ENSXMAG00000007822	sf1	61	79.426	ENSCAFG00000014239	SF1	58	83.377	Canis_familiaris
ENSXMAG00000007822	sf1	61	79.426	ENSCAFG00020014381	SF1	58	83.377	Canis_lupus_dingo
ENSXMAG00000007822	sf1	61	79.426	ENSCHIG00000025867	SF1	68	83.377	Capra_hircus
ENSXMAG00000007822	sf1	61	79.376	ENSCAPG00000010762	SF1	66	83.069	Cavia_aperea
ENSXMAG00000007822	sf1	61	79.426	ENSCPOG00000012290	SF1	69	83.069	Cavia_porcellus
ENSXMAG00000007822	sf1	61	71.707	ENSCCAG00000023781	-	82	73.087	Cebus_capucinus
ENSXMAG00000007822	sf1	62	79.376	ENSCCAG00000037881	SF1	89	83.113	Cebus_capucinus
ENSXMAG00000007822	sf1	61	79.426	ENSCATG00000011564	SF1	89	83.113	Cercocebus_atys
ENSXMAG00000007822	sf1	61	79.426	ENSCSAG00000007258	SF1	68	83.377	Chlorocebus_sabaeus
ENSXMAG00000007822	sf1	58	74.185	ENSCHOG00000006008	SF1	66	77.778	Choloepus_hoffmanni
ENSXMAG00000007822	sf1	62	56.057	ENSCING00000005564	-	83	55.765	Ciona_intestinalis
ENSXMAG00000007822	sf1	82	49.820	ENSCSAVG00000009055	-	60	68.093	Ciona_savignyi
ENSXMAG00000007822	sf1	61	79.426	ENSCANG00000042201	SF1	89	83.113	Colobus_angolensis_palliatus
ENSXMAG00000007822	sf1	61	79.665	ENSCGRG00001003677	Sf1	65	83.905	Cricetulus_griseus_chok1gshd
ENSXMAG00000007822	sf1	61	79.616	ENSCGRG00000001708	Sf1	68	83.598	Cricetulus_griseus_crigri
ENSXMAG00000007822	sf1	97	87.746	ENSCSEG00000014375	sf1	94	88.012	Cynoglossus_semilaevis
ENSXMAG00000007822	sf1	98	94.402	ENSCVAG00000001670	sf1	97	94.377	Cyprinodon_variegatus
ENSXMAG00000007822	sf1	84	84.859	ENSDARG00000008188	sf1	97	84.885	Danio_rerio
ENSXMAG00000007822	sf1	61	79.665	ENSDNOG00000001282	SF1	68	83.377	Dasypus_novemcinctus
ENSXMAG00000007822	sf1	62	79.236	ENSDORG00000016334	Sf1	58	83.377	Dipodomys_ordii
ENSXMAG00000007822	sf1	61	72.596	ENSETEG00000012830	SF1	51	75.668	Echinops_telfairi
ENSXMAG00000007822	sf1	61	79.426	ENSEASG00005018272	SF1	68	83.377	Equus_asinus_asinus
ENSXMAG00000007822	sf1	61	79.665	ENSECAG00000024544	SF1	68	83.641	Equus_caballus
ENSXMAG00000007822	sf1	55	79.412	ENSEEUG00000001058	SF1	83	83.881	Erinaceus_europaeus
ENSXMAG00000007822	sf1	80	77.612	ENSELUG00000013225	sf1	60	82.937	Esox_lucius
ENSXMAG00000007822	sf1	61	79.426	ENSFCAG00000012231	SF1	75	69.276	Felis_catus
ENSXMAG00000007822	sf1	61	79.376	ENSFDAG00000009833	SF1	66	83.333	Fukomys_damarensis
ENSXMAG00000007822	sf1	97	91.945	ENSFHEG00000022656	sf1	97	89.970	Fundulus_heteroclitus
ENSXMAG00000007822	sf1	74	78.333	ENSGMOG00000007469	sf1	59	93.846	Gadus_morhua
ENSXMAG00000007822	sf1	93	98.847	ENSGAFG00000019284	sf1	100	98.862	Gambusia_affinis
ENSXMAG00000007822	sf1	57	91.957	ENSGACG00000000826	sf1	64	92.412	Gasterosteus_aculeatus
ENSXMAG00000007822	sf1	65	81.585	ENSGAGG00000021691	SF1	68	72.371	Gopherus_agassizii
ENSXMAG00000007822	sf1	70	90.789	ENSHBUG00000011598	sf1	97	89.426	Haplochromis_burtoni
ENSXMAG00000007822	sf1	61	79.426	ENSHGLG00000009541	SF1	65	83.377	Heterocephalus_glaber_female
ENSXMAG00000007822	sf1	62	69.195	ENSHGLG00100008255	-	73	74.346	Heterocephalus_glaber_male
ENSXMAG00000007822	sf1	58	75.989	ENSHGLG00100008076	-	66	81.288	Heterocephalus_glaber_male
ENSXMAG00000007822	sf1	61	79.376	ENSHGLG00100013879	-	66	83.333	Heterocephalus_glaber_male
ENSXMAG00000007822	sf1	72	86.170	ENSHCOG00000011388	sf1	97	86.495	Hippocampus_comes
ENSXMAG00000007822	sf1	66	70.159	ENSSTOG00000024353	-	68	72.917	Ictidomys_tridecemlineatus
ENSXMAG00000007822	sf1	61	79.376	ENSSTOG00000009790	-	59	83.333	Ictidomys_tridecemlineatus
ENSXMAG00000007822	sf1	61	79.665	ENSJJAG00000011788	Sf1	58	83.641	Jaculus_jaculus
ENSXMAG00000007822	sf1	70	91.721	ENSKMAG00000005854	sf1	91	91.107	Kryptolebias_marmoratus
ENSXMAG00000007822	sf1	83	89.247	ENSLBEG00000019836	sf1	72	89.371	Labrus_bergylta
ENSXMAG00000007822	sf1	63	77.885	ENSLACG00000018493	SF1	68	79.101	Latimeria_chalumnae
ENSXMAG00000007822	sf1	70	80.086	ENSLOCG00000002130	sf1	72	80.213	Lepisosteus_oculatus
ENSXMAG00000007822	sf1	61	80.529	ENSLAFG00000007201	SF1	63	83.820	Loxodonta_africana
ENSXMAG00000007822	sf1	61	79.426	ENSMFAG00000033122	SF1	89	83.113	Macaca_fascicularis
ENSXMAG00000007822	sf1	60	80.446	ENSMMUG00000022606	SF1	90	83.113	Macaca_mulatta
ENSXMAG00000007822	sf1	61	79.426	ENSMNEG00000037901	SF1	89	83.113	Macaca_nemestrina
ENSXMAG00000007822	sf1	69	73.548	ENSMLEG00000040706	SF1	91	81.606	Mandrillus_leucophaeus
ENSXMAG00000007822	sf1	70	91.447	ENSMAMG00000001780	sf1	97	91.212	Mastacembelus_armatus
ENSXMAG00000007822	sf1	70	90.789	ENSMZEG00005009196	sf1	97	89.426	Maylandia_zebra
ENSXMAG00000007822	sf1	61	79.665	ENSMAUG00000014064	Sf1	65	83.905	Mesocricetus_auratus
ENSXMAG00000007822	sf1	62	78.947	ENSMICG00000001202	SF1	89	82.895	Microcebus_murinus
ENSXMAG00000007822	sf1	61	79.426	ENSMOCG00000022038	Sf1	65	83.905	Microtus_ochrogaster
ENSXMAG00000007822	sf1	70	87.281	ENSMMOG00000020474	sf1	67	87.527	Mola_mola
ENSXMAG00000007822	sf1	62	79.475	ENSMODG00000029407	SF1	80	83.377	Monodelphis_domestica
ENSXMAG00000007822	sf1	70	84.868	ENSMALG00000020521	sf1	73	84.902	Monopterus_albus
ENSXMAG00000007822	sf1	61	79.665	MGP_CAROLIEiJ_G0022607	Sf1	99	95.489	Mus_caroli
ENSXMAG00000007822	sf1	61	79.665	ENSMUSG00000024949	Sf1	99	95.489	Mus_musculus
ENSXMAG00000007822	sf1	61	79.665	MGP_PahariEiJ_G0014101	Sf1	99	95.489	Mus_pahari
ENSXMAG00000007822	sf1	61	79.665	MGP_SPRETEiJ_G0023518	Sf1	99	95.489	Mus_spretus
ENSXMAG00000007822	sf1	61	79.665	ENSMPUG00000012684	SF1	58	83.377	Mustela_putorius_furo
ENSXMAG00000007822	sf1	63	77.934	ENSMLUG00000015217	-	59	81.654	Myotis_lucifugus
ENSXMAG00000007822	sf1	66	74.945	ENSMLUG00000029800	-	64	79.683	Myotis_lucifugus
ENSXMAG00000007822	sf1	61	79.665	ENSNGAG00000005550	Sf1	65	83.641	Nannospalax_galili
ENSXMAG00000007822	sf1	70	89.035	ENSNBRG00000017606	sf1	97	85.822	Neolamprologus_brichardi
ENSXMAG00000007822	sf1	61	79.426	ENSNLEG00000005236	-	89	83.113	Nomascus_leucogenys
ENSXMAG00000007822	sf1	60	79.562	ENSMEUG00000013424	SF1	69	83.871	Notamacropus_eugenii
ENSXMAG00000007822	sf1	55	79.679	ENSOPRG00000005008	SF1	66	83.881	Ochotona_princeps
ENSXMAG00000007822	sf1	61	77.033	ENSODEG00000006102	-	59	80.739	Octodon_degus
ENSXMAG00000007822	sf1	70	90.570	ENSONIG00000015728	sf1	97	89.275	Oreochromis_niloticus
ENSXMAG00000007822	sf1	51	75.072	ENSOANG00000002909	SF1	76	77.316	Ornithorhynchus_anatinus
ENSXMAG00000007822	sf1	61	79.426	ENSOCUG00000026486	SF1	59	83.113	Oryctolagus_cuniculus
ENSXMAG00000007822	sf1	72	87.633	ENSORLG00000011853	sf1	66	89.207	Oryzias_latipes
ENSXMAG00000007822	sf1	72	87.633	ENSORLG00020011834	sf1	66	89.207	Oryzias_latipes_hni
ENSXMAG00000007822	sf1	70	87.965	ENSORLG00015012855	sf1	66	88.326	Oryzias_latipes_hsok
ENSXMAG00000007822	sf1	70	89.716	ENSOMEG00000005210	sf1	97	89.666	Oryzias_melastigma
ENSXMAG00000007822	sf1	61	79.426	ENSOGAG00000016196	SF1	58	83.377	Otolemur_garnettii
ENSXMAG00000007822	sf1	61	79.426	ENSOARG00000009166	SF1	65	83.377	Ovis_aries
ENSXMAG00000007822	sf1	62	79.376	ENSPPAG00000002799	-	90	83.113	Pan_paniscus
ENSXMAG00000007822	sf1	61	79.426	ENSPPRG00000013566	SF1	58	84.254	Panthera_pardus
ENSXMAG00000007822	sf1	61	79.426	ENSPTIG00000016141	SF1	67	82.292	Panthera_tigris_altaica
ENSXMAG00000007822	sf1	63	79.577	ENSPTRG00000003846	SF1	89	83.113	Pan_troglodytes
ENSXMAG00000007822	sf1	61	79.426	ENSPANG00000020754	SF1	89	83.113	Papio_anubis
ENSXMAG00000007822	sf1	50	79.228	ENSPKIG00000012116	sf1	79	79.495	Paramormyrops_kingsleyae
ENSXMAG00000007822	sf1	61	79.665	ENSPEMG00000010463	Sf1	65	83.905	Peromyscus_maniculatus_bairdii
ENSXMAG00000007822	sf1	65	61.995	ENSPMAG00000008272	sf1	56	63.081	Petromyzon_marinus
ENSXMAG00000007822	sf1	61	79.665	ENSPCIG00000018173	SF1	60	83.641	Phascolarctos_cinereus
ENSXMAG00000007822	sf1	100	98.964	ENSPFOG00000013683	sf1	100	98.964	Poecilia_formosa
ENSXMAG00000007822	sf1	93	98.413	ENSPLAG00000018076	sf1	96	98.413	Poecilia_latipinna
ENSXMAG00000007822	sf1	100	99.112	ENSPMEG00000005726	sf1	100	99.112	Poecilia_mexicana
ENSXMAG00000007822	sf1	100	98.225	ENSPREG00000004155	sf1	100	98.225	Poecilia_reticulata
ENSXMAG00000007822	sf1	61	79.426	ENSPPYG00000003098	-	70	83.377	Pongo_abelii
ENSXMAG00000007822	sf1	61	79.187	ENSPCAG00000013631	SF1	75	68.750	Procavia_capensis
ENSXMAG00000007822	sf1	62	78.947	ENSPCOG00000027546	SF1	89	82.895	Propithecus_coquereli
ENSXMAG00000007822	sf1	70	90.570	ENSPNYG00000004673	sf1	97	89.275	Pundamilia_nyererei
ENSXMAG00000007822	sf1	70	82.251	ENSPNAG00000013072	sf1	97	83.384	Pygocentrus_nattereri
ENSXMAG00000007822	sf1	61	79.665	ENSRNOG00000021085	Sf1	60	83.601	Rattus_norvegicus
ENSXMAG00000007822	sf1	61	79.710	ENSRBIG00000042818	SF1	89	83.113	Rhinopithecus_bieti
ENSXMAG00000007822	sf1	61	79.426	ENSRROG00000045655	SF1	91	81.606	Rhinopithecus_roxellana
ENSXMAG00000007822	sf1	62	36.830	YLR116W	MSL5	56	44.203	Saccharomyces_cerevisiae
ENSXMAG00000007822	sf1	85	63.502	ENSSBOG00000022267	-	88	69.737	Saimiri_boliviensis_boliviensis
ENSXMAG00000007822	sf1	73	71.869	ENSSHAG00000006841	SF1	69	84.987	Sarcophilus_harrisii
ENSXMAG00000007822	sf1	73	80.625	ENSSFOG00015021978	sf1	66	82.135	Scleropages_formosus
ENSXMAG00000007822	sf1	87	86.278	ENSSMAG00000007549	sf1	70	89.588	Scophthalmus_maximus
ENSXMAG00000007822	sf1	70	90.591	ENSSDUG00000003903	sf1	98	90.781	Seriola_dumerili
ENSXMAG00000007822	sf1	70	90.153	ENSSLDG00000013075	sf1	97	88.048	Seriola_lalandi_dorsalis
ENSXMAG00000007822	sf1	61	75.060	ENSSARG00000008180	SF1	71	78.571	Sorex_araneus
ENSXMAG00000007822	sf1	61	79.487	ENSSPUG00000012907	SF1	58	86.761	Sphenodon_punctatus
ENSXMAG00000007822	sf1	97	90.592	ENSSPAG00000019060	sf1	97	90.744	Stegastes_partitus
ENSXMAG00000007822	sf1	61	79.426	ENSSSCG00000013021	SF1	68	83.377	Sus_scrofa
ENSXMAG00000007822	sf1	75	72.159	ENSTNIG00000004820	sf1	72	77.121	Tetraodon_nigroviridis
ENSXMAG00000007822	sf1	61	73.710	ENSTBEG00000013133	SF1	55	75.000	Tupaia_belangeri
ENSXMAG00000007822	sf1	61	74.820	ENSTTRG00000008857	SF1	68	78.571	Tursiops_truncatus
ENSXMAG00000007822	sf1	62	79.236	ENSUMAG00000007268	SF1	71	83.377	Ursus_maritimus
ENSXMAG00000007822	sf1	61	79.426	ENSVVUG00000028585	SF1	68	83.377	Vulpes_vulpes
ENSXMAG00000007822	sf1	85	72.991	ENSXETG00000008434	sf1	62	85.083	Xenopus_tropicalis
ENSXMAG00000007822	sf1	75	92.857	ENSXCOG00000003704	sf1	95	92.857	Xiphophorus_couchianus