EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000007885 (Gene tree)
Gene ID: 102229956
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 43185 bases
Position: chr24:9640631-9683815
Accession: 102229956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000007929	R3H	PF01424.22	1.2e-12	1	1
ENSXMAP00000029662	R3H	PF01424.22	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000027158	-	4823	XM_005810192	ENSXMAP00000029662	1024 (aa)	XP_005810249	UPI000C6ED8DF
ENSXMAT00000007937	-	3625	-	ENSXMAP00000007929	972 (aa)	-	M4A0D5

Gene Model

Click here to download ENSXMAG00000007885's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000007885's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000007885	r3hdm1	88	61.867	ENSG00000048991	R3HDM1	86	70.196	Homo_sapiens
ENSXMAG00000007885	r3hdm1	100	82.696	ENSAPOG00000020850	r3hdm1	96	82.122	Acanthochromis_polyacanthus
ENSXMAG00000007885	r3hdm1	99	45.938	ENSAMEG00000014886	R3HDM1	89	46.549	Ailuropoda_melanoleuca
ENSXMAG00000007885	r3hdm1	100	82.235	ENSAOCG00000005192	r3hdm1	100	82.139	Amphiprion_ocellaris
ENSXMAG00000007885	r3hdm1	100	78.476	ENSAPEG00000016108	r3hdm1	100	80.864	Amphiprion_percula
ENSXMAG00000007885	r3hdm1	100	74.617	ENSATEG00000000232	r3hdm1	100	76.008	Anabas_testudineus
ENSXMAG00000007885	r3hdm1	99	45.818	ENSAPLG00000015231	R3HDM1	89	46.255	Anas_platyrhynchos
ENSXMAG00000007885	r3hdm1	99	48.926	ENSACAG00000001676	R3HDM1	89	49.209	Anolis_carolinensis
ENSXMAG00000007885	r3hdm1	82	68.608	ENSANAG00000035334	R3HDM1	81	68.608	Aotus_nancymaae
ENSXMAG00000007885	r3hdm1	97	78.482	ENSACLG00000027282	r3hdm1	100	77.859	Astatotilapia_calliptera
ENSXMAG00000007885	r3hdm1	88	68.108	ENSAMXG00000003536	r3hdm1	83	67.546	Astyanax_mexicanus
ENSXMAG00000007885	r3hdm1	91	61.985	ENSAMXG00000012861	R3HDM1	89	61.259	Astyanax_mexicanus
ENSXMAG00000007885	r3hdm1	62	47.771	ENSAMXG00000020587	arpp21	83	47.077	Astyanax_mexicanus
ENSXMAG00000007885	r3hdm1	99	47.712	ENSBTAG00000013302	R3HDM1	89	48.372	Bos_taurus
ENSXMAG00000007885	r3hdm1	88	62.133	ENSCJAG00000011718	R3HDM1	81	68.608	Callithrix_jacchus
ENSXMAG00000007885	r3hdm1	99	45.760	ENSCAFG00000005075	R3HDM1	89	46.735	Canis_familiaris
ENSXMAG00000007885	r3hdm1	99	48.462	ENSCAFG00020016119	R3HDM1	92	57.663	Canis_lupus_dingo
ENSXMAG00000007885	r3hdm1	99	47.802	ENSCHIG00000020851	R3HDM1	89	48.276	Capra_hircus
ENSXMAG00000007885	r3hdm1	99	46.211	ENSCPOG00000012784	R3HDM1	100	61.204	Cavia_porcellus
ENSXMAG00000007885	r3hdm1	82	68.285	ENSCCAG00000027199	R3HDM1	81	68.285	Cebus_capucinus
ENSXMAG00000007885	r3hdm1	88	61.600	ENSCATG00000023642	R3HDM1	81	67.961	Cercocebus_atys
ENSXMAG00000007885	r3hdm1	99	46.679	ENSCLAG00000007962	R3HDM1	100	62.126	Chinchilla_lanigera
ENSXMAG00000007885	r3hdm1	99	47.570	ENSCSAG00000016356	R3HDM1	89	47.959	Chlorocebus_sabaeus
ENSXMAG00000007885	r3hdm1	77	67.188	ENSCHOG00000013638	R3HDM1	68	67.188	Choloepus_hoffmanni
ENSXMAG00000007885	r3hdm1	79	71.583	ENSCPBG00000009645	R3HDM1	86	71.583	Chrysemys_picta_bellii
ENSXMAG00000007885	r3hdm1	88	61.600	ENSCANG00000034748	R3HDM1	81	68.285	Colobus_angolensis_palliatus
ENSXMAG00000007885	r3hdm1	99	46.901	ENSCGRG00001012357	R3hdm1	86	47.364	Cricetulus_griseus_chok1gshd
ENSXMAG00000007885	r3hdm1	99	46.901	ENSCGRG00000012080	R3hdm1	100	64.548	Cricetulus_griseus_crigri
ENSXMAG00000007885	r3hdm1	100	66.822	ENSCSEG00000008944	r3hdm1	100	67.224	Cynoglossus_semilaevis
ENSXMAG00000007885	r3hdm1	100	84.734	ENSCVAG00000007582	r3hdm1	100	83.961	Cyprinodon_variegatus
ENSXMAG00000007885	r3hdm1	99	43.535	ENSDNOG00000000771	R3HDM1	89	44.766	Dasypus_novemcinctus
ENSXMAG00000007885	r3hdm1	91	54.403	ENSETEG00000013606	R3HDM1	89	43.511	Echinops_telfairi
ENSXMAG00000007885	r3hdm1	91	60.621	ENSEASG00005007392	R3HDM1	88	60.621	Equus_asinus_asinus
ENSXMAG00000007885	r3hdm1	91	60.621	ENSECAG00000019114	R3HDM1	88	60.621	Equus_caballus
ENSXMAG00000007885	r3hdm1	56	51.977	ENSEEUG00000012589	R3HDM1	53	51.032	Erinaceus_europaeus
ENSXMAG00000007885	r3hdm1	95	51.808	ENSELUG00000004909	R3HDM1	85	52.157	Esox_lucius
ENSXMAG00000007885	r3hdm1	88	51.732	ENSELUG00000014413	r3hdm1	83	52.009	Esox_lucius
ENSXMAG00000007885	r3hdm1	82	67.961	ENSFCAG00000027113	R3HDM1	88	60.859	Felis_catus
ENSXMAG00000007885	r3hdm1	84	49.833	ENSFALG00000013731	R3HDM1	90	44.198	Ficedula_albicollis
ENSXMAG00000007885	r3hdm1	99	46.679	ENSFDAG00000016478	R3HDM1	100	62.207	Fukomys_damarensis
ENSXMAG00000007885	r3hdm1	100	86.307	ENSFHEG00000018713	r3hdm1	100	86.307	Fundulus_heteroclitus
ENSXMAG00000007885	r3hdm1	65	62.105	ENSGMOG00000006042	-	79	55.088	Gadus_morhua
ENSXMAG00000007885	r3hdm1	78	68.078	ENSGALG00000012246	R3HDM1	84	65.132	Gallus_gallus
ENSXMAG00000007885	r3hdm1	99	95.959	ENSGAFG00000006203	r3hdm1	100	96.000	Gambusia_affinis
ENSXMAG00000007885	r3hdm1	95	76.287	ENSGACG00000014925	r3hdm1	95	75.810	Gasterosteus_aculeatus
ENSXMAG00000007885	r3hdm1	89	61.735	ENSGAGG00000007840	R3HDM1	82	61.735	Gopherus_agassizii
ENSXMAG00000007885	r3hdm1	88	61.867	ENSGGOG00000008156	R3HDM1	81	68.285	Gorilla_gorilla
ENSXMAG00000007885	r3hdm1	52	80.037	ENSHBUG00000015737	R3HDM1	96	79.667	Haplochromis_burtoni
ENSXMAG00000007885	r3hdm1	99	47.481	ENSHGLG00000015718	R3HDM1	100	64.765	Heterocephalus_glaber_female
ENSXMAG00000007885	r3hdm1	97	39.037	ENSHGLG00100015374	-	91	39.054	Heterocephalus_glaber_male
ENSXMAG00000007885	r3hdm1	99	47.388	ENSHGLG00100003184	-	100	65.101	Heterocephalus_glaber_male
ENSXMAG00000007885	r3hdm1	100	63.732	ENSHCOG00000013366	r3hdm1	100	65.186	Hippocampus_comes
ENSXMAG00000007885	r3hdm1	83	70.032	ENSIPUG00000001676	R3HDM1	100	59.753	Ictalurus_punctatus
ENSXMAG00000007885	r3hdm1	89	62.973	ENSIPUG00000013629	r3hdm1	89	62.162	Ictalurus_punctatus
ENSXMAG00000007885	r3hdm1	99	47.712	ENSSTOG00000007572	R3HDM1	100	63.880	Ictidomys_tridecemlineatus
ENSXMAG00000007885	r3hdm1	91	62.143	ENSLACG00000005334	R3HDM1	87	49.805	Latimeria_chalumnae
ENSXMAG00000007885	r3hdm1	99	51.253	ENSLOCG00000001641	r3hdm1	90	51.439	Lepisosteus_oculatus
ENSXMAG00000007885	r3hdm1	85	65.689	ENSLAFG00000009065	R3HDM1	85	65.909	Loxodonta_africana
ENSXMAG00000007885	r3hdm1	82	68.285	ENSMFAG00000030331	R3HDM1	88	61.337	Macaca_fascicularis
ENSXMAG00000007885	r3hdm1	88	61.867	ENSMMUG00000009844	R3HDM1	81	68.285	Macaca_mulatta
ENSXMAG00000007885	r3hdm1	91	60.382	ENSMNEG00000027793	R3HDM1	88	61.337	Macaca_nemestrina
ENSXMAG00000007885	r3hdm1	88	61.867	ENSMLEG00000043189	R3HDM1	81	68.285	Mandrillus_leucophaeus
ENSXMAG00000007885	r3hdm1	100	78.831	ENSMAMG00000004532	r3hdm1	100	78.065	Mastacembelus_armatus
ENSXMAG00000007885	r3hdm1	100	78.756	ENSMZEG00005003157	r3hdm1	100	78.695	Maylandia_zebra
ENSXMAG00000007885	r3hdm1	96	46.915	ENSMGAG00000012461	R3HDM1	88	45.915	Meleagris_gallopavo
ENSXMAG00000007885	r3hdm1	99	47.325	ENSMAUG00000010315	R3hdm1	100	64.548	Mesocricetus_auratus
ENSXMAG00000007885	r3hdm1	82	68.285	ENSMICG00000005900	-	87	61.600	Microcebus_murinus
ENSXMAG00000007885	r3hdm1	82	67.961	ENSMICG00000042655	-	92	61.333	Microcebus_murinus
ENSXMAG00000007885	r3hdm1	50	56.391	ENSMOCG00000019833	-	100	64.214	Microtus_ochrogaster
ENSXMAG00000007885	r3hdm1	99	46.661	ENSMODG00000000923	R3HDM1	96	46.903	Monodelphis_domestica
ENSXMAG00000007885	r3hdm1	100	77.115	ENSMALG00000009000	r3hdm1	90	75.385	Monopterus_albus
ENSXMAG00000007885	r3hdm1	99	47.032	MGP_CAROLIEiJ_G0014543	R3hdm1	100	64.548	Mus_caroli
ENSXMAG00000007885	r3hdm1	99	47.217	ENSMUSG00000056211	R3hdm1	100	64.548	Mus_musculus
ENSXMAG00000007885	r3hdm1	99	46.660	MGP_PahariEiJ_G0027779	R3hdm1	100	64.548	Mus_pahari
ENSXMAG00000007885	r3hdm1	99	47.173	MGP_SPRETEiJ_G0015350	R3hdm1	100	64.548	Mus_spretus
ENSXMAG00000007885	r3hdm1	99	45.744	ENSMPUG00000002412	R3HDM1	89	46.729	Mustela_putorius_furo
ENSXMAG00000007885	r3hdm1	99	45.093	ENSMLUG00000013824	R3HDM1	89	46.598	Myotis_lucifugus
ENSXMAG00000007885	r3hdm1	88	61.600	ENSNLEG00000008622	R3HDM1	81	68.285	Nomascus_leucogenys
ENSXMAG00000007885	r3hdm1	94	41.567	ENSMEUG00000011784	R3HDM1	90	42.717	Notamacropus_eugenii
ENSXMAG00000007885	r3hdm1	99	46.586	ENSODEG00000008607	R3HDM1	100	62.207	Octodon_degus
ENSXMAG00000007885	r3hdm1	95	74.016	ENSONIG00000012017	r3hdm1	89	73.819	Oreochromis_niloticus
ENSXMAG00000007885	r3hdm1	99	45.320	ENSOANG00000007987	R3HDM1	89	46.412	Ornithorhynchus_anatinus
ENSXMAG00000007885	r3hdm1	99	46.032	ENSOCUG00000017366	R3HDM1	97	46.828	Oryctolagus_cuniculus
ENSXMAG00000007885	r3hdm1	100	72.543	ENSORLG00000004297	r3hdm1	100	72.543	Oryzias_latipes
ENSXMAG00000007885	r3hdm1	100	72.929	ENSORLG00015017355	r3hdm1	100	73.025	Oryzias_latipes_hsok
ENSXMAG00000007885	r3hdm1	50	77.505	ENSOMEG00000003882	-	97	77.609	Oryzias_melastigma
ENSXMAG00000007885	r3hdm1	99	45.736	ENSOGAG00000003136	R3HDM1	89	46.723	Otolemur_garnettii
ENSXMAG00000007885	r3hdm1	99	45.837	ENSOARG00000010788	R3HDM1	89	46.667	Ovis_aries
ENSXMAG00000007885	r3hdm1	88	61.867	ENSPPAG00000027858	R3HDM1	81	68.285	Pan_paniscus
ENSXMAG00000007885	r3hdm1	82	67.638	ENSPPRG00000002626	R3HDM1	87	61.333	Panthera_pardus
ENSXMAG00000007885	r3hdm1	82	67.961	ENSPTIG00000016581	R3HDM1	87	61.600	Panthera_tigris_altaica
ENSXMAG00000007885	r3hdm1	88	61.867	ENSPTRG00000012494	R3HDM1	81	68.285	Pan_troglodytes
ENSXMAG00000007885	r3hdm1	88	61.867	ENSPANG00000026448	R3HDM1	81	68.285	Papio_anubis
ENSXMAG00000007885	r3hdm1	87	70.571	ENSPKIG00000004328	r3hdm1	78	72.787	Paramormyrops_kingsleyae
ENSXMAG00000007885	r3hdm1	50	57.988	ENSPKIG00000011224	R3HDM1	91	58.368	Paramormyrops_kingsleyae
ENSXMAG00000007885	r3hdm1	99	45.968	ENSPSIG00000012915	R3HDM1	88	46.499	Pelodiscus_sinensis
ENSXMAG00000007885	r3hdm1	99	46.895	ENSPEMG00000015187	R3hdm1	100	64.883	Peromyscus_maniculatus_bairdii
ENSXMAG00000007885	r3hdm1	93	39.095	ENSPMAG00000003369	-	95	38.852	Petromyzon_marinus
ENSXMAG00000007885	r3hdm1	91	59.906	ENSPCIG00000002491	R3HDM1	88	60.142	Phascolarctos_cinereus
ENSXMAG00000007885	r3hdm1	100	94.482	ENSPFOG00000015036	r3hdm1	100	93.611	Poecilia_formosa
ENSXMAG00000007885	r3hdm1	97	94.025	ENSPLAG00000018042	r3hdm1	100	93.187	Poecilia_latipinna
ENSXMAG00000007885	r3hdm1	97	94.031	ENSPMEG00000023947	r3hdm1	100	93.089	Poecilia_mexicana
ENSXMAG00000007885	r3hdm1	100	93.878	ENSPREG00000007902	r3hdm1	100	93.489	Poecilia_reticulata
ENSXMAG00000007885	r3hdm1	99	45.098	ENSPPYG00000012815	R3HDM1	89	45.853	Pongo_abelii
ENSXMAG00000007885	r3hdm1	77	70.354	ENSPCAG00000006208	R3HDM1	71	60.237	Procavia_capensis
ENSXMAG00000007885	r3hdm1	79	70.397	ENSPCOG00000012698	R3HDM1	79	70.397	Propithecus_coquereli
ENSXMAG00000007885	r3hdm1	99	40.354	ENSPVAG00000006098	R3HDM1	89	41.884	Pteropus_vampyrus
ENSXMAG00000007885	r3hdm1	84	70.774	ENSPNAG00000013952	r3hdm1	81	70.774	Pygocentrus_nattereri
ENSXMAG00000007885	r3hdm1	84	70.957	ENSPNAG00000005436	R3HDM1	90	70.297	Pygocentrus_nattereri
ENSXMAG00000007885	r3hdm1	99	47.398	ENSRNOG00000004099	R3hdm1	89	47.271	Rattus_norvegicus
ENSXMAG00000007885	r3hdm1	79	70.504	ENSRBIG00000033317	R3HDM1	86	70.504	Rhinopithecus_bieti
ENSXMAG00000007885	r3hdm1	82	68.285	ENSRROG00000034534	R3HDM1	81	68.285	Rhinopithecus_roxellana
ENSXMAG00000007885	r3hdm1	88	61.600	ENSSBOG00000020389	R3HDM1	81	68.608	Saimiri_boliviensis_boliviensis
ENSXMAG00000007885	r3hdm1	99	46.075	ENSSHAG00000016999	R3HDM1	88	47.363	Sarcophilus_harrisii
ENSXMAG00000007885	r3hdm1	82	75.083	ENSSFOG00015014134	r3hdm1	78	74.086	Scleropages_formosus
ENSXMAG00000007885	r3hdm1	100	48.592	ENSSFOG00015019851	-	93	57.393	Scleropages_formosus
ENSXMAG00000007885	r3hdm1	97	74.213	ENSSMAG00000001669	r3hdm1	90	73.706	Scophthalmus_maximus
ENSXMAG00000007885	r3hdm1	97	78.265	ENSSDUG00000010749	r3hdm1	100	78.163	Seriola_dumerili
ENSXMAG00000007885	r3hdm1	100	76.454	ENSSLDG00000004499	r3hdm1	90	76.168	Seriola_lalandi_dorsalis
ENSXMAG00000007885	r3hdm1	55	53.746	ENSSARG00000000352	-	52	55.049	Sorex_araneus
ENSXMAG00000007885	r3hdm1	99	46.262	ENSSPUG00000004167	R3HDM1	88	46.168	Sphenodon_punctatus
ENSXMAG00000007885	r3hdm1	100	77.200	ENSSPAG00000004648	r3hdm1	100	79.469	Stegastes_partitus
ENSXMAG00000007885	r3hdm1	88	58.871	ENSSSCG00000015692	R3HDM1	87	58.871	Sus_scrofa
ENSXMAG00000007885	r3hdm1	96	46.784	ENSTGUG00000011750	R3HDM1	89	45.915	Taeniopygia_guttata
ENSXMAG00000007885	r3hdm1	100	69.553	ENSTRUG00000011654	r3hdm1	99	70.355	Takifugu_rubripes
ENSXMAG00000007885	r3hdm1	98	65.146	ENSTNIG00000010362	r3hdm1	99	64.487	Tetraodon_nigroviridis
ENSXMAG00000007885	r3hdm1	91	46.878	ENSTTRG00000003935	R3HDM1	79	45.768	Tursiops_truncatus
ENSXMAG00000007885	r3hdm1	62	68.932	ENSUAMG00000024806	R3HDM1	93	61.600	Ursus_americanus
ENSXMAG00000007885	r3hdm1	82	67.961	ENSUMAG00000005552	R3HDM1	87	61.600	Ursus_maritimus
ENSXMAG00000007885	r3hdm1	85	49.010	ENSVPAG00000007333	R3HDM1	74	49.184	Vicugna_pacos
ENSXMAG00000007885	r3hdm1	82	67.961	ENSVVUG00000006457	R3HDM1	81	67.961	Vulpes_vulpes
ENSXMAG00000007885	r3hdm1	99	42.272	ENSXETG00000019330	r3hdm1	99	43.231	Xenopus_tropicalis
ENSXMAG00000007885	r3hdm1	76	92.568	ENSXCOG00000017448	r3hdm1	93	92.568	Xiphophorus_couchianus