EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000007929 (Gene tree)
Gene ID: 102233271
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 3438 bases
Position: chr24:9767767-9771204
Accession: 102233271
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000007957	RRM_1	PF00076.22	3.8e-31	1	2
ENSXMAP00000007957	RRM_1	PF00076.22	3.8e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000007965	-	1272	XM_005810205	ENSXMAP00000007957	423 (aa)	XP_005810262	M4A0G3

Gene Model

Click here to download ENSXMAG00000007929's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000007929's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000007929	pspc1	77	77.301	ENSG00000121390	PSPC1	92	71.698	Homo_sapiens
ENSXMAG00000007929	pspc1	93	81.888	ENSAPOG00000015946	pspc1	96	70.309	Acanthochromis_polyacanthus
ENSXMAG00000007929	pspc1	84	73.521	ENSAMEG00000017420	PSPC1	66	73.803	Ailuropoda_melanoleuca
ENSXMAG00000007929	pspc1	98	73.913	ENSACIG00000018695	pspc1	77	74.010	Amphilophus_citrinellus
ENSXMAG00000007929	pspc1	93	82.143	ENSAOCG00000005279	pspc1	96	71.325	Amphiprion_ocellaris
ENSXMAG00000007929	pspc1	93	82.143	ENSAPEG00000015927	pspc1	96	71.325	Amphiprion_percula
ENSXMAG00000007929	pspc1	93	71.139	ENSATEG00000004878	pspc1	74	68.861	Anabas_testudineus
ENSXMAG00000007929	pspc1	74	69.716	ENSAPLG00000003643	SFPQ	56	69.792	Anas_platyrhynchos
ENSXMAG00000007929	pspc1	62	78.409	ENSAPLG00000006246	PSPC1	65	78.409	Anas_platyrhynchos
ENSXMAG00000007929	pspc1	80	75.000	ENSACAG00000002093	PSPC1	73	67.413	Anolis_carolinensis
ENSXMAG00000007929	pspc1	93	67.000	ENSANAG00000000059	PSPC1	98	66.414	Aotus_nancymaae
ENSXMAG00000007929	pspc1	95	75.186	ENSACLG00000027220	pspc1	82	73.645	Astatotilapia_calliptera
ENSXMAG00000007929	pspc1	92	68.593	ENSAMXG00000036881	pspc1	74	68.342	Astyanax_mexicanus
ENSXMAG00000007929	pspc1	86	71.858	ENSBTAG00000003934	PSPC1	73	68.448	Bos_taurus
ENSXMAG00000007929	pspc1	84	73.521	ENSCJAG00000004554	PSPC1	66	73.521	Callithrix_jacchus
ENSXMAG00000007929	pspc1	77	77.301	ENSCAFG00020002009	PSPC1	98	68.687	Canis_lupus_dingo
ENSXMAG00000007929	pspc1	86	71.858	ENSCHIG00000016708	PSPC1	73	68.448	Capra_hircus
ENSXMAG00000007929	pspc1	62	70.037	ENSTSYG00000032882	PSPC1	59	66.182	Carlito_syrichta
ENSXMAG00000007929	pspc1	77	77.301	ENSCPOG00000000395	PSPC1	98	68.608	Cavia_porcellus
ENSXMAG00000007929	pspc1	84	73.521	ENSCCAG00000033498	PSPC1	66	73.521	Cebus_capucinus
ENSXMAG00000007929	pspc1	77	77.301	ENSCATG00000036434	PSPC1	96	73.464	Cercocebus_atys
ENSXMAG00000007929	pspc1	65	76.812	ENSCLAG00000005241	PSPC1	61	76.812	Chinchilla_lanigera
ENSXMAG00000007929	pspc1	83	73.926	ENSCHOG00000008913	PSPC1	66	73.926	Choloepus_hoffmanni
ENSXMAG00000007929	pspc1	77	76.380	ENSCPBG00000020859	PSPC1	62	76.380	Chrysemys_picta_bellii
ENSXMAG00000007929	pspc1	73	56.494	ENSCSAVG00000003533	-	53	59.353	Ciona_savignyi
ENSXMAG00000007929	pspc1	63	79.323	ENSCANG00000018948	PSPC1	87	79.323	Colobus_angolensis_palliatus
ENSXMAG00000007929	pspc1	85	71.935	ENSCGRG00001018368	Pspc1	69	71.935	Cricetulus_griseus_chok1gshd
ENSXMAG00000007929	pspc1	85	71.935	ENSCGRG00000011724	Pspc1	69	71.935	Cricetulus_griseus_crigri
ENSXMAG00000007929	pspc1	94	87.657	ENSCVAG00000007679	-	77	87.657	Cyprinodon_variegatus
ENSXMAG00000007929	pspc1	95	64.428	ENSDARG00000006621	pspc1	70	73.022	Danio_rerio
ENSXMAG00000007929	pspc1	78	76.829	ENSDNOG00000011078	PSPC1	68	71.545	Dasypus_novemcinctus
ENSXMAG00000007929	pspc1	84	70.704	ENSDORG00000016050	Pspc1	65	70.704	Dipodomys_ordii
ENSXMAG00000007929	pspc1	72	67.419	ENSEBUG00000003964	-	61	61.823	Eptatretus_burgeri
ENSXMAG00000007929	pspc1	70	45.511	ENSEBUG00000010133	pspc1	76	48.288	Eptatretus_burgeri
ENSXMAG00000007929	pspc1	93	68.622	ENSEASG00005000119	PSPC1	92	72.162	Equus_asinus_asinus
ENSXMAG00000007929	pspc1	93	68.622	ENSECAG00000017286	PSPC1	92	72.162	Equus_caballus
ENSXMAG00000007929	pspc1	61	67.692	ENSEEUG00000011288	-	56	63.265	Erinaceus_europaeus
ENSXMAG00000007929	pspc1	92	69.500	ENSELUG00000003746	pspc1	94	69.598	Esox_lucius
ENSXMAG00000007929	pspc1	93	68.528	ENSFCAG00000027841	PSPC1	98	68.687	Felis_catus
ENSXMAG00000007929	pspc1	80	74.631	ENSFALG00000008750	PSPC1	74	67.513	Ficedula_albicollis
ENSXMAG00000007929	pspc1	82	74.783	ENSFDAG00000002617	PSPC1	67	74.783	Fukomys_damarensis
ENSXMAG00000007929	pspc1	84	67.213	ENSGMOG00000015074	pspc1	69	69.748	Gadus_morhua
ENSXMAG00000007929	pspc1	77	76.380	ENSGALG00000017142	PSPC1	62	76.380	Gallus_gallus
ENSXMAG00000007929	pspc1	100	95.508	ENSGAFG00000006327	pspc1	88	95.508	Gambusia_affinis
ENSXMAG00000007929	pspc1	93	72.911	ENSGACG00000014901	pspc1	98	78.125	Gasterosteus_aculeatus
ENSXMAG00000007929	pspc1	77	76.380	ENSGAGG00000019164	PSPC1	62	76.380	Gopherus_agassizii
ENSXMAG00000007929	pspc1	77	77.301	ENSGGOG00000003414	PSPC1	92	71.698	Gorilla_gorilla
ENSXMAG00000007929	pspc1	93	83.418	ENSHBUG00000001139	pspc1	75	83.418	Haplochromis_burtoni
ENSXMAG00000007929	pspc1	85	73.464	ENSHGLG00000018811	PSPC1	67	73.464	Heterocephalus_glaber_female
ENSXMAG00000007929	pspc1	73	74.110	ENSHGLG00100007962	PSPC1	93	74.593	Heterocephalus_glaber_male
ENSXMAG00000007929	pspc1	86	77.686	ENSHCOG00000013251	pspc1	88	71.537	Hippocampus_comes
ENSXMAG00000007929	pspc1	93	70.127	ENSIPUG00000013192	pspc1	74	70.127	Ictalurus_punctatus
ENSXMAG00000007929	pspc1	84	73.803	ENSSTOG00000026833	PSPC1	98	68.367	Ictidomys_tridecemlineatus
ENSXMAG00000007929	pspc1	77	76.994	ENSJJAG00000018334	Pspc1	66	73.639	Jaculus_jaculus
ENSXMAG00000007929	pspc1	84	71.788	ENSKMAG00000013525	-	83	72.113	Kryptolebias_marmoratus
ENSXMAG00000007929	pspc1	91	76.864	ENSLBEG00000004474	pspc1	83	76.864	Labrus_bergylta
ENSXMAG00000007929	pspc1	68	75.874	ENSLACG00000010762	PSPC1	74	66.076	Latimeria_chalumnae
ENSXMAG00000007929	pspc1	93	71.684	ENSLOCG00000010832	pspc1	73	71.684	Lepisosteus_oculatus
ENSXMAG00000007929	pspc1	83	73.926	ENSLAFG00000010968	PSPC1	66	73.926	Loxodonta_africana
ENSXMAG00000007929	pspc1	77	77.301	ENSMFAG00000032728	PSPC1	97	73.464	Macaca_fascicularis
ENSXMAG00000007929	pspc1	78	77.439	ENSMMUG00000020262	PSPC1	94	73.333	Macaca_mulatta
ENSXMAG00000007929	pspc1	77	77.301	ENSMNEG00000027401	PSPC1	74	73.464	Macaca_nemestrina
ENSXMAG00000007929	pspc1	63	78.571	ENSMLEG00000039043	PSPC1	62	78.571	Mandrillus_leucophaeus
ENSXMAG00000007929	pspc1	93	78.372	ENSMAMG00000004333	pspc1	73	78.626	Mastacembelus_armatus
ENSXMAG00000007929	pspc1	95	75.186	ENSMZEG00005005726	pspc1	82	73.645	Maylandia_zebra
ENSXMAG00000007929	pspc1	64	77.037	ENSMGAG00000015134	PSPC1	66	77.037	Meleagris_gallopavo
ENSXMAG00000007929	pspc1	93	63.544	ENSMAUG00000021067	Pspc1	77	65.940	Mesocricetus_auratus
ENSXMAG00000007929	pspc1	83	74.286	ENSMICG00000013970	PSPC1	98	68.262	Microcebus_murinus
ENSXMAG00000007929	pspc1	83	74.212	ENSMOCG00000006060	Pspc1	66	74.212	Microtus_ochrogaster
ENSXMAG00000007929	pspc1	95	53.500	ENSMMOG00000004352	pspc1	67	51.741	Mola_mola
ENSXMAG00000007929	pspc1	83	74.148	ENSMODG00000008029	PSPC1	58	71.545	Monodelphis_domestica
ENSXMAG00000007929	pspc1	93	78.316	ENSMALG00000008914	pspc1	76	78.316	Monopterus_albus
ENSXMAG00000007929	pspc1	83	74.499	MGP_CAROLIEiJ_G0019341	Pspc1	84	65.306	Mus_caroli
ENSXMAG00000007929	pspc1	83	74.499	ENSMUSG00000021938	Pspc1	74	74.499	Mus_musculus
ENSXMAG00000007929	pspc1	83	74.499	MGP_PahariEiJ_G0030359	Pspc1	84	65.306	Mus_pahari
ENSXMAG00000007929	pspc1	83	74.499	MGP_SPRETEiJ_G0020232	Pspc1	84	65.306	Mus_spretus
ENSXMAG00000007929	pspc1	77	77.301	ENSMPUG00000013347	PSPC1	69	71.816	Mustela_putorius_furo
ENSXMAG00000007929	pspc1	77	76.292	ENSMLUG00000017663	PSPC1	66	73.184	Myotis_lucifugus
ENSXMAG00000007929	pspc1	83	73.926	ENSNGAG00000011271	Pspc1	66	73.926	Nannospalax_galili
ENSXMAG00000007929	pspc1	95	75.622	ENSNBRG00000014059	pspc1	94	73.464	Neolamprologus_brichardi
ENSXMAG00000007929	pspc1	77	77.301	ENSNLEG00000001294	PSPC1	66	73.803	Nomascus_leucogenys
ENSXMAG00000007929	pspc1	77	69.632	ENSODEG00000019012	-	73	65.063	Octodon_degus
ENSXMAG00000007929	pspc1	77	64.110	ENSODEG00000007817	-	67	60.598	Octodon_degus
ENSXMAG00000007929	pspc1	93	82.653	ENSONIG00000012010	pspc1	75	82.653	Oreochromis_niloticus
ENSXMAG00000007929	pspc1	79	62.763	ENSOANG00000011381	-	65	63.272	Ornithorhynchus_anatinus
ENSXMAG00000007929	pspc1	62	78.788	ENSOANG00000009017	-	66	78.788	Ornithorhynchus_anatinus
ENSXMAG00000007929	pspc1	77	77.301	ENSOCUG00000006153	PSPC1	66	74.085	Oryctolagus_cuniculus
ENSXMAG00000007929	pspc1	93	78.880	ENSORLG00000004232	-	76	79.135	Oryzias_latipes
ENSXMAG00000007929	pspc1	93	79.135	ENSORLG00020000578	PSPC1	76	75.064	Oryzias_latipes_hni
ENSXMAG00000007929	pspc1	93	79.389	ENSORLG00015017480	pspc1	76	79.644	Oryzias_latipes_hsok
ENSXMAG00000007929	pspc1	50	88.095	ENSOMEG00000003779	pspc1	95	87.923	Oryzias_melastigma
ENSXMAG00000007929	pspc1	84	73.315	ENSOGAG00000012643	PSPC1	65	73.315	Otolemur_garnettii
ENSXMAG00000007929	pspc1	76	76.852	ENSOARG00000014163	PSPC1	66	76.543	Ovis_aries
ENSXMAG00000007929	pspc1	78	77.439	ENSPPAG00000009836	PSPC1	92	77.439	Pan_paniscus
ENSXMAG00000007929	pspc1	77	77.301	ENSPPRG00000008833	PSPC1	69	72.358	Panthera_pardus
ENSXMAG00000007929	pspc1	62	78.788	ENSPTIG00000016917	PSPC1	55	78.788	Panthera_tigris_altaica
ENSXMAG00000007929	pspc1	77	77.301	ENSPTRG00000005677	PSPC1	92	71.698	Pan_troglodytes
ENSXMAG00000007929	pspc1	77	77.301	ENSPANG00000001992	PSPC1	95	73.464	Papio_anubis
ENSXMAG00000007929	pspc1	93	71.501	ENSPKIG00000003578	pspc1	75	71.501	Paramormyrops_kingsleyae
ENSXMAG00000007929	pspc1	77	75.153	ENSPSIG00000005168	PSPC1	64	73.887	Pelodiscus_sinensis
ENSXMAG00000007929	pspc1	84	72.145	ENSPMGG00000015135	pspc1	98	71.910	Periophthalmus_magnuspinnatus
ENSXMAG00000007929	pspc1	83	74.212	ENSPEMG00000015214	Pspc1	66	74.212	Peromyscus_maniculatus_bairdii
ENSXMAG00000007929	pspc1	68	43.878	ENSPMAG00000004618	pspc1	89	43.878	Petromyzon_marinus
ENSXMAG00000007929	pspc1	83	74.148	ENSPCIG00000017680	PSPC1	69	71.545	Phascolarctos_cinereus
ENSXMAG00000007929	pspc1	91	97.179	ENSPFOG00000003362	pspc1	76	97.179	Poecilia_formosa
ENSXMAG00000007929	pspc1	93	96.962	ENSPLAG00000011540	pspc1	76	96.962	Poecilia_latipinna
ENSXMAG00000007929	pspc1	93	96.962	ENSPMEG00000008322	pspc1	76	96.962	Poecilia_mexicana
ENSXMAG00000007929	pspc1	93	96.203	ENSPREG00000007786	pspc1	76	96.203	Poecilia_reticulata
ENSXMAG00000007929	pspc1	77	77.301	ENSPPYG00000005186	PSPC1	76	71.698	Pongo_abelii
ENSXMAG00000007929	pspc1	85	72.423	ENSPCOG00000014364	PSPC1	70	73.295	Propithecus_coquereli
ENSXMAG00000007929	pspc1	78	76.524	ENSPVAG00000005036	PSPC1	66	73.184	Pteropus_vampyrus
ENSXMAG00000007929	pspc1	95	75.682	ENSPNYG00000008893	pspc1	82	74.138	Pundamilia_nyererei
ENSXMAG00000007929	pspc1	93	70.707	ENSPNAG00000016511	pspc1	83	70.707	Pygocentrus_nattereri
ENSXMAG00000007929	pspc1	83	74.212	ENSRNOG00000020782	Pspc1	74	74.212	Rattus_norvegicus
ENSXMAG00000007929	pspc1	85	73.184	ENSRBIG00000036057	PSPC1	97	73.184	Rhinopithecus_bieti
ENSXMAG00000007929	pspc1	83	73.654	ENSRROG00000036334	PSPC1	98	68.500	Rhinopithecus_roxellana
ENSXMAG00000007929	pspc1	63	79.323	ENSSBOG00000028172	PSPC1	87	79.323	Saimiri_boliviensis_boliviensis
ENSXMAG00000007929	pspc1	83	68.079	ENSSHAG00000004696	PSPC1	69	65.768	Sarcophilus_harrisii
ENSXMAG00000007929	pspc1	77	80.675	ENSSFOG00015001395	pspc1	69	80.428	Scleropages_formosus
ENSXMAG00000007929	pspc1	93	77.861	ENSSMAG00000001761	pspc1	91	74.934	Scophthalmus_maximus
ENSXMAG00000007929	pspc1	93	78.934	ENSSDUG00000010651	pspc1	72	80.964	Seriola_dumerili
ENSXMAG00000007929	pspc1	96	72.794	ENSSLDG00000004284	pspc1	82	70.944	Seriola_lalandi_dorsalis
ENSXMAG00000007929	pspc1	77	69.632	ENSSARG00000000888	PSPC1	69	65.753	Sorex_araneus
ENSXMAG00000007929	pspc1	92	58.228	ENSSPUG00000008550	PSPC1	74	59.241	Sphenodon_punctatus
ENSXMAG00000007929	pspc1	93	81.378	ENSSPAG00000001921	pspc1	73	81.378	Stegastes_partitus
ENSXMAG00000007929	pspc1	78	76.292	ENSSSCG00000009569	PSPC1	99	67.848	Sus_scrofa
ENSXMAG00000007929	pspc1	77	76.380	ENSTGUG00000011295	PSPC1	70	76.380	Taeniopygia_guttata
ENSXMAG00000007929	pspc1	93	71.684	ENSTRUG00000011335	pspc1	75	70.918	Takifugu_rubripes
ENSXMAG00000007929	pspc1	93	72.959	ENSTNIG00000010358	pspc1	79	74.406	Tetraodon_nigroviridis
ENSXMAG00000007929	pspc1	77	70.769	ENSTBEG00000002361	PSPC1	72	65.067	Tupaia_belangeri
ENSXMAG00000007929	pspc1	86	71.781	ENSTTRG00000003343	PSPC1	69	71.781	Tursiops_truncatus
ENSXMAG00000007929	pspc1	75	73.270	ENSUAMG00000012309	PSPC1	99	67.978	Ursus_americanus
ENSXMAG00000007929	pspc1	85	72.905	ENSUMAG00000013993	PSPC1	97	72.905	Ursus_maritimus
ENSXMAG00000007929	pspc1	62	79.167	ENSVPAG00000010029	PSPC1	66	79.167	Vicugna_pacos
ENSXMAG00000007929	pspc1	78	77.204	ENSVVUG00000006414	PSPC1	99	68.687	Vulpes_vulpes
ENSXMAG00000007929	pspc1	100	99.054	ENSXCOG00000017438	pspc1	100	99.054	Xiphophorus_couchianus