EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000008059 (Gene tree)
Gene ID: 102220549
Gene Symbol: -
Alias: rbm4l|wu:fc25a01
Full Name: RNA-binding protein 4.1-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 2890 bases
Position: chr14:3797100-3799989
Accession: 102220549
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000008080	zf-CCHC	PF00098.23	6.2e-05	1	1
ENSXMAP00000021248	zf-CCHC	PF00098.23	7.5e-05	1	1
ENSXMAP00000028101	RRM_5	PF13893.6	1.5e-06	1	1
ENSXMAP00000008080	RRM_5	PF13893.6	1.6e-06	1	1
ENSXMAP00000021248	RRM_5	PF13893.6	2.2e-06	1	1
ENSXMAP00000008080	RRM_1	PF00076.22	6.5e-33	1	2
ENSXMAP00000008080	RRM_1	PF00076.22	6.5e-33	2	2
ENSXMAP00000028101	RRM_1	PF00076.22	6.9e-33	1	2
ENSXMAP00000028101	RRM_1	PF00076.22	6.9e-33	2	2
ENSXMAP00000021248	RRM_1	PF00076.22	8.8e-33	1	2
ENSXMAP00000021248	RRM_1	PF00076.22	8.8e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000032377	-	1551	XM_014472068	ENSXMAP00000021248	378 (aa)	XP_014327554	UPI0003B51BB6
ENSXMAT00000037179	-	1038	-	ENSXMAP00000028101	345 (aa)	-	-
ENSXMAT00000008090	-	1029	-	ENSXMAP00000008080	342 (aa)	-	M4A0T6

Gene Model

Click here to download ENSXMAG00000008059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000008059's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000008059	-	94	69.939	ENSAPOG00000012353	rbm4.1	99	46.523	Acanthochromis_polyacanthus
ENSXMAG00000008059	-	86	67.391	ENSACIG00000016482	rbm4.1	99	64.467	Amphilophus_citrinellus
ENSXMAG00000008059	-	87	65.775	ENSAOCG00000010915	rbm4.1	99	46.523	Amphiprion_ocellaris
ENSXMAG00000008059	-	87	65.775	ENSAPEG00000009494	rbm4.1	99	46.523	Amphiprion_percula
ENSXMAG00000008059	-	87	66.310	ENSATEG00000001904	rbm4.1	99	48.104	Anabas_testudineus
ENSXMAG00000008059	-	86	67.391	ENSACLG00000007722	rbm4.1	99	67.391	Astatotilapia_calliptera
ENSXMAG00000008059	-	100	64.781	ENSACLG00000007740	-	100	64.524	Astatotilapia_calliptera
ENSXMAG00000008059	-	99	51.302	ENSAMXG00000036611	rbm4.1	99	51.436	Astyanax_mexicanus
ENSXMAG00000008059	-	51	57.143	ENSAMXG00000032121	rbm4.2	88	57.143	Astyanax_mexicanus
ENSXMAG00000008059	-	100	61.013	ENSCSEG00000014359	-	100	60.506	Cynoglossus_semilaevis
ENSXMAG00000008059	-	95	69.939	ENSCSEG00000014365	rbm4.1	99	45.238	Cynoglossus_semilaevis
ENSXMAG00000008059	-	86	71.779	ENSCVAG00000019349	rbm4.1	99	47.470	Cyprinodon_variegatus
ENSXMAG00000008059	-	82	37.722	ENSDARG00000044545	zgc:77262	56	44.920	Danio_rerio
ENSXMAG00000008059	-	99	69.355	ENSDARG00000036386	rbm4.1	94	72.393	Danio_rerio
ENSXMAG00000008059	-	99	47.607	ENSDARG00000055080	rbm4.2	99	49.351	Danio_rerio
ENSXMAG00000008059	-	51	56.742	ENSEBUG00000008142	-	95	41.371	Eptatretus_burgeri
ENSXMAG00000008059	-	93	42.609	ENSEBUG00000007174	-	97	53.448	Eptatretus_burgeri
ENSXMAG00000008059	-	87	69.730	ENSELUG00000013205	rbm4.1	99	69.189	Esox_lucius
ENSXMAG00000008059	-	94	72.393	ENSFHEG00000022926	rbm4.1	99	47.045	Fundulus_heteroclitus
ENSXMAG00000008059	-	100	58.586	ENSGMOG00000007455	-	100	59.045	Gadus_morhua
ENSXMAG00000008059	-	51	69.714	ENSGMOG00000007464	rbm4.1	98	69.939	Gadus_morhua
ENSXMAG00000008059	-	95	73.006	ENSGAFG00000019302	rbm4.1	99	47.837	Gambusia_affinis
ENSXMAG00000008059	-	95	69.325	ENSGACG00000000822	rbm4.1	96	69.325	Gasterosteus_aculeatus
ENSXMAG00000008059	-	100	62.468	ENSGACG00000000821	-	100	62.211	Gasterosteus_aculeatus
ENSXMAG00000008059	-	86	67.391	ENSHBUG00000011610	rbm4.1	99	67.391	Haplochromis_burtoni
ENSXMAG00000008059	-	96	45.865	ENSHCOG00000011403	rbm4.1	98	69.939	Hippocampus_comes
ENSXMAG00000008059	-	93	49.315	ENSIPUG00000022937	rbm4.2	97	50.262	Ictalurus_punctatus
ENSXMAG00000008059	-	87	69.355	ENSIPUG00000022931	rbm4.1	94	72.393	Ictalurus_punctatus
ENSXMAG00000008059	-	100	61.347	ENSKMAG00000006528	-	100	61.347	Kryptolebias_marmoratus
ENSXMAG00000008059	-	95	49.118	ENSKMAG00000006556	rbm4.1	95	71.166	Kryptolebias_marmoratus
ENSXMAG00000008059	-	100	65.553	ENSLBEG00000019756	-	93	76.389	Labrus_bergylta
ENSXMAG00000008059	-	99	46.009	ENSLBEG00000019782	rbm4.1	99	46.556	Labrus_bergylta
ENSXMAG00000008059	-	86	66.310	ENSMAMG00000001765	rbm4.1	71	66.310	Mastacembelus_armatus
ENSXMAG00000008059	-	100	66.751	ENSMAMG00000001760	-	100	67.005	Mastacembelus_armatus
ENSXMAG00000008059	-	54	57.143	ENSMZEG00005028158	-	69	56.744	Maylandia_zebra
ENSXMAG00000008059	-	86	67.391	ENSMZEG00005009205	rbm4.1	99	67.391	Maylandia_zebra
ENSXMAG00000008059	-	86	67.380	ENSMMOG00000020479	rbm4.1	95	71.779	Mola_mola
ENSXMAG00000008059	-	100	69.309	ENSMALG00000020557	-	100	69.054	Monopterus_albus
ENSXMAG00000008059	-	99	47.552	ENSMALG00000020544	rbm4.1	99	47.743	Monopterus_albus
ENSXMAG00000008059	-	86	67.391	ENSNBRG00000017755	rbm4.1	99	67.391	Neolamprologus_brichardi
ENSXMAG00000008059	-	86	67.391	ENSONIG00000015730	rbm4.1	99	67.391	Oreochromis_niloticus
ENSXMAG00000008059	-	99	45.863	ENSORLG00000012496	rbm4.1	94	71.779	Oryzias_latipes
ENSXMAG00000008059	-	99	45.863	ENSORLG00020012454	rbm4.1	94	71.779	Oryzias_latipes_hni
ENSXMAG00000008059	-	99	45.863	ENSORLG00015013678	rbm4.1	94	71.779	Oryzias_latipes_hsok
ENSXMAG00000008059	-	99	46.714	ENSOMEG00000001001	rbm4.1	95	72.393	Oryzias_melastigma
ENSXMAG00000008059	-	87	66.667	ENSPKIG00000020805	rbm4.1	94	69.325	Paramormyrops_kingsleyae
ENSXMAG00000008059	-	59	45.673	ENSPMAG00000003433	rbm4.2	82	52.874	Petromyzon_marinus
ENSXMAG00000008059	-	100	97.889	ENSPFOG00000012685	-	100	97.889	Poecilia_formosa
ENSXMAG00000008059	-	95	73.006	ENSPFOG00000012675	rbm4.1	99	47.837	Poecilia_formosa
ENSXMAG00000008059	-	95	73.006	ENSPLAG00000018572	rbm4.1	99	47.837	Poecilia_latipinna
ENSXMAG00000008059	-	59	96.479	ENSPLAG00000018569	-	90	96.479	Poecilia_latipinna
ENSXMAG00000008059	-	59	96.479	ENSPMEG00000006278	-	90	96.479	Poecilia_mexicana
ENSXMAG00000008059	-	95	73.006	ENSPMEG00000006290	rbm4.1	99	47.837	Poecilia_mexicana
ENSXMAG00000008059	-	100	91.534	ENSPREG00000003764	-	100	91.534	Poecilia_reticulata
ENSXMAG00000008059	-	95	73.006	ENSPREG00000003724	rbm4.1	99	47.837	Poecilia_reticulata
ENSXMAG00000008059	-	86	67.391	ENSPNYG00000004662	rbm4.1	99	67.391	Pundamilia_nyererei
ENSXMAG00000008059	-	95	52.973	ENSPNAG00000013057	rbm4.2	95	53.243	Pygocentrus_nattereri
ENSXMAG00000008059	-	87	69.355	ENSPNAG00000002539	rbm4.1	94	72.393	Pygocentrus_nattereri
ENSXMAG00000008059	-	86	69.939	ENSSFOG00015021996	sf1	95	69.939	Scleropages_formosus
ENSXMAG00000008059	-	52	52.985	ENSSFOG00015018567	zgc:77262	89	52.985	Scleropages_formosus
ENSXMAG00000008059	-	87	67.380	ENSSMAG00000007571	rbm4.1	96	71.779	Scophthalmus_maximus
ENSXMAG00000008059	-	100	66.497	ENSSDUG00000003936	-	100	67.259	Seriola_dumerili
ENSXMAG00000008059	-	87	65.775	ENSSDUG00000003925	rbm4.1	99	46.778	Seriola_dumerili
ENSXMAG00000008059	-	87	65.775	ENSSLDG00000013147	rbm4.1	99	46.778	Seriola_lalandi_dorsalis
ENSXMAG00000008059	-	100	64.541	ENSSLDG00000013157	-	100	66.244	Seriola_lalandi_dorsalis
ENSXMAG00000008059	-	100	67.263	ENSSPAG00000019046	-	100	67.008	Stegastes_partitus
ENSXMAG00000008059	-	87	65.775	ENSSPAG00000019053	rbm4.1	99	46.905	Stegastes_partitus
ENSXMAG00000008059	-	100	61.795	ENSTRUG00000013328	-	100	61.282	Takifugu_rubripes
ENSXMAG00000008059	-	82	69.714	ENSTRUG00000013334	rbm4.1	98	45.477	Takifugu_rubripes
ENSXMAG00000008059	-	94	52.439	ENSTNIG00000004821	rbm4.1	94	51.682	Tetraodon_nigroviridis
ENSXMAG00000008059	-	100	59.794	ENSTNIG00000000316	-	100	59.744	Tetraodon_nigroviridis
ENSXMAG00000008059	-	76	48.485	ENSXETG00000026649	rbm4b	93	44.037	Xenopus_tropicalis
ENSXMAG00000008059	-	95	73.006	ENSXCOG00000003731	rbm4.1	99	47.837	Xiphophorus_couchianus
ENSXMAG00000008059	-	95	73.006	ENSXMAG00000008069	rbm4.1	99	47.837	Xiphophorus_maculatus