EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000008238 (Gene tree)
Gene ID: 102226030
Gene Symbol: lsm11
Alias: im:7149708
Full Name: LSM11%2C U7 small nuclear RNA associated
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 62300 bases
Position: chr23:22375479-22437778
Accession: 102226030
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000037750	LSM	PF01423.22	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000008265	-	915	-	ENSXMAP00000008254	304 (aa)	-	M4A1B0
ENSXMAT00000040226	-	1118	XM_005815275	ENSXMAP00000037750	301 (aa)	XP_005815332	UPI0003B4ADF7

Gene Model

Click here to download ENSXMAG00000008238's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000008238's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000008238	lsm11	56	30.588	ENSCING00000002109	-	84	30.588	Ciona_intestinalis
ENSXMAG00000008238	lsm11	50	42.718	ENSCANG00000040781	LSM11	98	42.718	Colobus_angolensis_palliatus
ENSXMAG00000008238	lsm11	52	40.952	ENSCGRG00000000197	Lsm11	95	40.952	Cricetulus_griseus_crigri
ENSXMAG00000008238	lsm11	100	65.094	ENSCSEG00000019951	lsm11	98	65.161	Cynoglossus_semilaevis
ENSXMAG00000008238	lsm11	100	69.408	ENSCVAG00000011703	lsm11	100	71.148	Cyprinodon_variegatus
ENSXMAG00000008238	lsm11	50	42.233	ENSMLEG00000027420	LSM11	98	42.233	Mandrillus_leucophaeus
ENSXMAG00000008238	lsm11	100	61.111	ENSMMOG00000009365	lsm11	100	61.111	Mola_mola
ENSXMAG00000008238	lsm11	53	47.159	ENSMLUG00000015930	LSM11	98	47.159	Myotis_lucifugus
ENSXMAG00000008238	lsm11	50	42.233	ENSOGAG00000009059	LSM11	98	42.233	Otolemur_garnettii
ENSXMAG00000008238	lsm11	50	42.647	ENSPSIG00000005234	LSM11	98	42.647	Pelodiscus_sinensis
ENSXMAG00000008238	lsm11	100	61.218	ENSPMGG00000020709	lsm11	100	60.256	Periophthalmus_magnuspinnatus
ENSXMAG00000008238	lsm11	100	91.776	ENSPFOG00000000512	lsm11	98	91.776	Poecilia_formosa
ENSXMAG00000008238	lsm11	100	91.475	ENSPLAG00000019434	lsm11	100	91.148	Poecilia_latipinna
ENSXMAG00000008238	lsm11	100	91.419	ENSPREG00000019696	lsm11	89	91.089	Poecilia_reticulata
ENSXMAG00000008238	lsm11	50	42.233	ENSTBEG00000000992	LSM11	98	42.233	Tupaia_belangeri