EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000008467 (Gene tree)
Gene ID: 102217463
Gene Symbol: sf3b2
Alias: fb53c07|wu:fb53c07|wu:fb93b08|zgc:136773
Full Name: splicing factor 3b subunit 2
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 11526 bases
Position: chr14:9337638-9349163
Accession: 102217463
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000008493	DUF382	PF04037.13	2e-58	1	1
ENSXMAP00000008493	SAP	PF02037.27	3.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000008506	-	2646	XM_005811548	ENSXMAP00000008493	860 (aa)	XP_005811605	M4A1Z9

Gene Model

Click here to download ENSXMAG00000008467's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000008467's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000008467	sf3b2	86	72.608	ENSG00000087365	SF3B2	99	90.159	Homo_sapiens
ENSXMAG00000008467	sf3b2	97	83.353	ENSAPOG00000001974	sf3b2	96	83.023	Acanthochromis_polyacanthus
ENSXMAG00000008467	sf3b2	86	71.042	ENSAMEG00000017206	SF3B2	97	64.880	Ailuropoda_melanoleuca
ENSXMAG00000008467	sf3b2	100	79.528	ENSACIG00000000624	sf3b2	100	82.360	Amphilophus_citrinellus
ENSXMAG00000008467	sf3b2	100	84.234	ENSAOCG00000009207	sf3b2	100	83.671	Amphiprion_ocellaris
ENSXMAG00000008467	sf3b2	100	83.784	ENSAPEG00000002762	sf3b2	97	83.784	Amphiprion_percula
ENSXMAG00000008467	sf3b2	97	57.016	ENSACAG00000008615	SF3B2	59	71.698	Anolis_carolinensis
ENSXMAG00000008467	sf3b2	86	72.477	ENSANAG00000029120	SF3B2	60	87.736	Aotus_nancymaae
ENSXMAG00000008467	sf3b2	100	83.504	ENSACLG00000014771	sf3b2	100	83.618	Astatotilapia_calliptera
ENSXMAG00000008467	sf3b2	74	91.555	ENSAMXG00000007929	sf3b2	100	73.604	Astyanax_mexicanus
ENSXMAG00000008467	sf3b2	86	70.951	ENSBTAG00000002778	SF3B2	97	64.951	Bos_taurus
ENSXMAG00000008467	sf3b2	63	49.823	WBGene00021004	sftb-2	89	49.174	Caenorhabditis_elegans
ENSXMAG00000008467	sf3b2	86	72.608	ENSCJAG00000001656	SF3B2	60	87.736	Callithrix_jacchus
ENSXMAG00000008467	sf3b2	86	71.134	ENSCAFG00000013033	SF3B2	59	87.736	Canis_familiaris
ENSXMAG00000008467	sf3b2	86	71.134	ENSCAFG00020015382	SF3B2	59	87.736	Canis_lupus_dingo
ENSXMAG00000008467	sf3b2	86	70.951	ENSCHIG00000011211	SF3B2	97	65.022	Capra_hircus
ENSXMAG00000008467	sf3b2	86	72.477	ENSTSYG00000000959	SF3B2	97	67.727	Carlito_syrichta
ENSXMAG00000008467	sf3b2	76	69.956	ENSCPOG00000008294	SF3B2	56	87.668	Cavia_porcellus
ENSXMAG00000008467	sf3b2	86	72.608	ENSCCAG00000035256	SF3B2	60	87.736	Cebus_capucinus
ENSXMAG00000008467	sf3b2	86	72.608	ENSCATG00000042240	SF3B2	61	87.736	Cercocebus_atys
ENSXMAG00000008467	sf3b2	86	71.953	ENSCLAG00000016852	SF3B2	60	87.736	Chinchilla_lanigera
ENSXMAG00000008467	sf3b2	86	71.245	ENSCSAG00000008121	SF3B2	59	87.736	Chlorocebus_sabaeus
ENSXMAG00000008467	sf3b2	82	87.629	ENSCHOG00000001476	SF3B2	76	86.590	Choloepus_hoffmanni
ENSXMAG00000008467	sf3b2	86	72.140	ENSCPBG00000022465	SF3B2	59	88.280	Chrysemys_picta_bellii
ENSXMAG00000008467	sf3b2	61	68.691	ENSCING00000005665	-	84	67.864	Ciona_intestinalis
ENSXMAG00000008467	sf3b2	62	67.730	ENSCSAVG00000002029	-	84	67.108	Ciona_savignyi
ENSXMAG00000008467	sf3b2	86	72.608	ENSCANG00000039680	SF3B2	60	87.736	Colobus_angolensis_palliatus
ENSXMAG00000008467	sf3b2	86	72.215	ENSCGRG00001015741	Sf3b2	97	67.841	Cricetulus_griseus_chok1gshd
ENSXMAG00000008467	sf3b2	86	72.477	ENSCGRG00000018110	Sf3b2	97	67.841	Cricetulus_griseus_crigri
ENSXMAG00000008467	sf3b2	87	79.497	ENSCSEG00000000230	sf3b2	100	77.021	Cynoglossus_semilaevis
ENSXMAG00000008467	sf3b2	100	90.636	ENSCVAG00000003357	sf3b2	100	90.278	Cyprinodon_variegatus
ENSXMAG00000008467	sf3b2	97	71.363	ENSDARG00000018049	sf3b2	64	91.573	Danio_rerio
ENSXMAG00000008467	sf3b2	86	72.895	ENSDNOG00000009484	SF3B2	67	87.547	Dasypus_novemcinctus
ENSXMAG00000008467	sf3b2	86	72.500	ENSDORG00000002495	Sf3b2	97	68.027	Dipodomys_ordii
ENSXMAG00000008467	sf3b2	57	81.395	ENSETEG00000020284	SF3B2	82	81.176	Echinops_telfairi
ENSXMAG00000008467	sf3b2	90	62.565	ENSEBUG00000013703	sf3b2	88	78.383	Eptatretus_burgeri
ENSXMAG00000008467	sf3b2	86	71.300	ENSEASG00005004508	SF3B2	59	87.736	Equus_asinus_asinus
ENSXMAG00000008467	sf3b2	86	71.300	ENSECAG00000024461	SF3B2	59	87.736	Equus_caballus
ENSXMAG00000008467	sf3b2	60	84.746	ENSEEUG00000014278	-	57	84.746	Erinaceus_europaeus
ENSXMAG00000008467	sf3b2	100	74.866	ENSELUG00000005586	sf3b2	63	92.992	Esox_lucius
ENSXMAG00000008467	sf3b2	86	72.237	ENSFCAG00000013289	SF3B2	97	65.022	Felis_catus
ENSXMAG00000008467	sf3b2	84	61.655	ENSFALG00000014653	SF3B2	75	75.472	Ficedula_albicollis
ENSXMAG00000008467	sf3b2	86	71.354	ENSFDAG00000019806	SF3B2	60	87.736	Fukomys_damarensis
ENSXMAG00000008467	sf3b2	100	90.983	ENSFHEG00000020968	sf3b2	100	90.394	Fundulus_heteroclitus
ENSXMAG00000008467	sf3b2	78	83.383	ENSGMOG00000012131	sf3b2	100	85.037	Gadus_morhua
ENSXMAG00000008467	sf3b2	100	98.605	ENSGAFG00000001675	sf3b2	100	98.605	Gambusia_affinis
ENSXMAG00000008467	sf3b2	78	83.756	ENSGACG00000019012	sf3b2	100	84.650	Gasterosteus_aculeatus
ENSXMAG00000008467	sf3b2	98	68.476	ENSGAGG00000023916	SF3B2	62	88.280	Gopherus_agassizii
ENSXMAG00000008467	sf3b2	77	89.518	ENSGGOG00000028448	SF3B2	60	87.736	Gorilla_gorilla
ENSXMAG00000008467	sf3b2	100	83.276	ENSHBUG00000017349	sf3b2	100	83.390	Haplochromis_burtoni
ENSXMAG00000008467	sf3b2	86	72.346	ENSHGLG00000010807	SF3B2	60	87.736	Heterocephalus_glaber_female
ENSXMAG00000008467	sf3b2	86	72.346	ENSHGLG00100006361	SF3B2	60	87.736	Heterocephalus_glaber_male
ENSXMAG00000008467	sf3b2	100	75.676	ENSHCOG00000016203	sf3b2	100	75.847	Hippocampus_comes
ENSXMAG00000008467	sf3b2	100	70.925	ENSIPUG00000009383	sf3b2	61	90.280	Ictalurus_punctatus
ENSXMAG00000008467	sf3b2	86	72.477	ENSSTOG00000028892	SF3B2	97	67.727	Ictidomys_tridecemlineatus
ENSXMAG00000008467	sf3b2	86	71.354	ENSJJAG00000018193	Sf3b2	97	67.497	Jaculus_jaculus
ENSXMAG00000008467	sf3b2	100	84.211	ENSKMAG00000020181	sf3b2	100	84.325	Kryptolebias_marmoratus
ENSXMAG00000008467	sf3b2	100	83.867	ENSLBEG00000027739	sf3b2	100	84.897	Labrus_bergylta
ENSXMAG00000008467	sf3b2	75	77.692	ENSLACG00000010429	SF3B2	60	88.180	Latimeria_chalumnae
ENSXMAG00000008467	sf3b2	86	72.368	ENSLAFG00000002128	SF3B2	60	87.547	Loxodonta_africana
ENSXMAG00000008467	sf3b2	86	72.513	ENSMFAG00000003064	SF3B2	61	87.571	Macaca_fascicularis
ENSXMAG00000008467	sf3b2	86	68.775	ENSMMUG00000011743	SF3B2	60	81.509	Macaca_mulatta
ENSXMAG00000008467	sf3b2	86	72.549	ENSMNEG00000034437	SF3B2	61	87.736	Macaca_nemestrina
ENSXMAG00000008467	sf3b2	86	72.418	ENSMLEG00000029373	SF3B2	61	87.736	Mandrillus_leucophaeus
ENSXMAG00000008467	sf3b2	100	81.306	ENSMAMG00000014103	sf3b2	100	83.933	Mastacembelus_armatus
ENSXMAG00000008467	sf3b2	100	83.504	ENSMZEG00005020789	sf3b2	100	83.618	Maylandia_zebra
ENSXMAG00000008467	sf3b2	97	67.173	ENSMICG00000016942	-	63	86.038	Microcebus_murinus
ENSXMAG00000008467	sf3b2	86	72.346	ENSMICG00000008565	-	60	87.547	Microcebus_murinus
ENSXMAG00000008467	sf3b2	86	72.739	ENSMOCG00000003136	Sf3b2	97	67.955	Microtus_ochrogaster
ENSXMAG00000008467	sf3b2	100	77.175	ENSMMOG00000012928	sf3b2	62	94.318	Mola_mola
ENSXMAG00000008467	sf3b2	86	72.739	ENSMODG00000008490	-	65	88.091	Monodelphis_domestica
ENSXMAG00000008467	sf3b2	74	74.574	ENSMODG00000025020	-	83	79.924	Monodelphis_domestica
ENSXMAG00000008467	sf3b2	100	81.236	ENSMALG00000015137	sf3b2	100	82.037	Monopterus_albus
ENSXMAG00000008467	sf3b2	86	72.215	MGP_CAROLIEiJ_G0022539	Sf3b2	60	87.547	Mus_caroli
ENSXMAG00000008467	sf3b2	86	72.477	ENSMUSG00000024853	Sf3b2	60	87.736	Mus_musculus
ENSXMAG00000008467	sf3b2	86	72.477	MGP_PahariEiJ_G0014036	Sf3b2	60	87.547	Mus_pahari
ENSXMAG00000008467	sf3b2	86	72.346	MGP_SPRETEiJ_G0023453	Sf3b2	60	87.736	Mus_spretus
ENSXMAG00000008467	sf3b2	86	71.134	ENSMPUG00000011349	SF3B2	97	65.022	Mustela_putorius_furo
ENSXMAG00000008467	sf3b2	86	70.801	ENSMLUG00000011136	SF3B2	97	64.513	Myotis_lucifugus
ENSXMAG00000008467	sf3b2	86	72.835	ENSNGAG00000012103	Sf3b2	97	67.691	Nannospalax_galili
ENSXMAG00000008467	sf3b2	85	71.073	ENSNLEG00000006007	SF3B2	60	85.283	Nomascus_leucogenys
ENSXMAG00000008467	sf3b2	77	84.091	ENSMEUG00000000019	SF3B2	81	84.091	Notamacropus_eugenii
ENSXMAG00000008467	sf3b2	97	63.832	ENSODEG00000017764	SF3B2	59	82.075	Octodon_degus
ENSXMAG00000008467	sf3b2	100	84.258	ENSONIG00000013068	sf3b2	100	83.428	Oreochromis_niloticus
ENSXMAG00000008467	sf3b2	86	67.628	ENSOANG00000012482	SF3B2	86	81.782	Ornithorhynchus_anatinus
ENSXMAG00000008467	sf3b2	97	65.769	ENSOCUG00000015722	-	62	87.736	Oryctolagus_cuniculus
ENSXMAG00000008467	sf3b2	62	46.953	ENSOCUG00000024154	-	60	59.091	Oryctolagus_cuniculus
ENSXMAG00000008467	sf3b2	100	81.393	ENSORLG00000008235	sf3b2	97	80.182	Oryzias_latipes
ENSXMAG00000008467	sf3b2	100	81.393	ENSORLG00020005357	sf3b2	100	80.182	Oryzias_latipes_hni
ENSXMAG00000008467	sf3b2	100	81.735	ENSORLG00015022454	sf3b2	87	95.644	Oryzias_latipes_hsok
ENSXMAG00000008467	sf3b2	100	81.350	ENSOMEG00000017480	sf3b2	100	80.023	Oryzias_melastigma
ENSXMAG00000008467	sf3b2	63	85.455	ENSOGAG00000005799	SF3B2	59	87.736	Otolemur_garnettii
ENSXMAG00000008467	sf3b2	97	66.742	ENSOARG00000002125	SF3B2	100	71.713	Ovis_aries
ENSXMAG00000008467	sf3b2	86	72.739	ENSPPAG00000007359	SF3B2	60	87.736	Pan_paniscus
ENSXMAG00000008467	sf3b2	86	72.237	ENSPPRG00000013334	SF3B2	97	65.022	Panthera_pardus
ENSXMAG00000008467	sf3b2	86	72.500	ENSPTIG00000015022	SF3B2	60	87.736	Panthera_tigris_altaica
ENSXMAG00000008467	sf3b2	86	72.739	ENSPTRG00000003912	SF3B2	60	87.736	Pan_troglodytes
ENSXMAG00000008467	sf3b2	86	72.608	ENSPANG00000008593	SF3B2	61	87.736	Papio_anubis
ENSXMAG00000008467	sf3b2	100	73.068	ENSPKIG00000016576	sf3b2	92	93.738	Paramormyrops_kingsleyae
ENSXMAG00000008467	sf3b2	86	74.934	ENSPSIG00000003158	SF3B2	80	88.847	Pelodiscus_sinensis
ENSXMAG00000008467	sf3b2	93	76.667	ENSPMGG00000000819	sf3b2	100	69.503	Periophthalmus_magnuspinnatus
ENSXMAG00000008467	sf3b2	86	72.346	ENSPEMG00000015437	Sf3b2	60	87.736	Peromyscus_maniculatus_bairdii
ENSXMAG00000008467	sf3b2	86	65.234	ENSPEMG00000015451	-	68	81.015	Peromyscus_maniculatus_bairdii
ENSXMAG00000008467	sf3b2	86	73.238	ENSPCIG00000008381	SF3B2	62	88.091	Phascolarctos_cinereus
ENSXMAG00000008467	sf3b2	100	97.329	ENSPFOG00000002552	sf3b2	100	97.329	Poecilia_formosa
ENSXMAG00000008467	sf3b2	100	97.677	ENSPLAG00000001471	sf3b2	100	97.677	Poecilia_latipinna
ENSXMAG00000008467	sf3b2	100	97.096	ENSPMEG00000013180	sf3b2	100	97.096	Poecilia_mexicana
ENSXMAG00000008467	sf3b2	100	96.524	ENSPREG00000002665	sf3b2	100	96.524	Poecilia_reticulata
ENSXMAG00000008467	sf3b2	86	71.263	ENSPCAG00000005129	SF3B2	59	87.547	Procavia_capensis
ENSXMAG00000008467	sf3b2	86	72.477	ENSPCOG00000025375	SF3B2	60	87.547	Propithecus_coquereli
ENSXMAG00000008467	sf3b2	54	92.982	ENSPVAG00000005466	-	79	92.982	Pteropus_vampyrus
ENSXMAG00000008467	sf3b2	93	82.821	ENSPNYG00000023594	sf3b2	100	82.073	Pundamilia_nyererei
ENSXMAG00000008467	sf3b2	87	74.937	ENSPNAG00000001891	sf3b2	100	73.077	Pygocentrus_nattereri
ENSXMAG00000008467	sf3b2	86	72.215	ENSRNOG00000020412	Sf3b2	97	67.727	Rattus_norvegicus
ENSXMAG00000008467	sf3b2	86	72.477	ENSRBIG00000034065	SF3B2	60	87.736	Rhinopithecus_bieti
ENSXMAG00000008467	sf3b2	86	72.477	ENSRROG00000034496	SF3B2	60	87.736	Rhinopithecus_roxellana
ENSXMAG00000008467	sf3b2	97	65.998	ENSSBOG00000026337	SF3B2	60	87.736	Saimiri_boliviensis_boliviensis
ENSXMAG00000008467	sf3b2	74	75.428	ENSSHAG00000010933	-	58	84.571	Sarcophilus_harrisii
ENSXMAG00000008467	sf3b2	96	58.226	ENSSHAG00000018043	-	64	73.120	Sarcophilus_harrisii
ENSXMAG00000008467	sf3b2	100	73.799	ENSSFOG00015021125	sf3b2	100	73.123	Scleropages_formosus
ENSXMAG00000008467	sf3b2	100	83.333	ENSSMAG00000004079	sf3b2	100	80.995	Scophthalmus_maximus
ENSXMAG00000008467	sf3b2	100	86.514	ENSSLDG00000006838	sf3b2	100	85.829	Seriola_lalandi_dorsalis
ENSXMAG00000008467	sf3b2	74	79.627	ENSSPUG00000009198	SF3B2	61	88.636	Sphenodon_punctatus
ENSXMAG00000008467	sf3b2	100	84.718	ENSSPAG00000004406	sf3b2	100	84.804	Stegastes_partitus
ENSXMAG00000008467	sf3b2	86	71.005	ENSSSCG00000012957	SF3B2	59	87.736	Sus_scrofa
ENSXMAG00000008467	sf3b2	100	64.262	ENSTRUG00000007611	sf3b2	87	85.741	Takifugu_rubripes
ENSXMAG00000008467	sf3b2	97	75.943	ENSTNIG00000007441	sf3b2	100	76.914	Tetraodon_nigroviridis
ENSXMAG00000008467	sf3b2	87	65.676	ENSTBEG00000004258	SF3B2	58	87.879	Tupaia_belangeri
ENSXMAG00000008467	sf3b2	86	70.747	ENSTTRG00000014339	SF3B2	59	87.736	Tursiops_truncatus
ENSXMAG00000008467	sf3b2	83	70.518	ENSUAMG00000020754	SF3B2	55	87.450	Ursus_americanus
ENSXMAG00000008467	sf3b2	86	71.134	ENSUMAG00000010994	SF3B2	97	65.022	Ursus_maritimus
ENSXMAG00000008467	sf3b2	86	71.134	ENSVVUG00000027029	SF3B2	59	87.736	Vulpes_vulpes
ENSXMAG00000008467	sf3b2	85	66.975	ENSXETG00000008422	sf3b2	67	84.250	Xenopus_tropicalis
ENSXMAG00000008467	sf3b2	91	83.969	ENSXCOG00000008943	sf3b2	93	99.810	Xiphophorus_couchianus