EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000008674 (Gene tree)
Gene ID: 102224764
Gene Symbol: rbm17
Alias: zgc:55840
Full Name: RNA binding motif protein 17
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 9451 bases
Position: chr17:17447589-17457039
Accession: 102224764
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000008703	RRM_1	PF00076.22	4.5e-06	1	1
ENSXMAP00000026551	RRM_1	PF00076.22	4.6e-06	1	1
ENSXMAP00000036594	RRM_1	PF00076.22	5e-06	1	1
ENSXMAP00000008703	G-patch	PF01585.23	2.3e-13	1	1
ENSXMAP00000036594	G-patch	PF01585.23	4.6e-13	1	1
ENSXMAP00000026551	G-patch	PF01585.23	4.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000035950	-	2256	-	ENSXMAP00000026551	402 (aa)	-	-
ENSXMAT00000036771	-	2307	XM_005808031	ENSXMAP00000036594	419 (aa)	XP_005808088	UPI0003B5C3E6
ENSXMAT00000008717	-	1164	-	ENSXMAP00000008703	387 (aa)	-	M4A2K9

Gene Model

Click here to download ENSXMAG00000008674's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000008674's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000008674	rbm17	100	81.081	ENSG00000134453	RBM17	100	80.344	Homo_sapiens
ENSXMAG00000008674	rbm17	99	94.000	ENSAPOG00000007101	rbm17	99	94.000	Acanthochromis_polyacanthus
ENSXMAG00000008674	rbm17	100	81.327	ENSAMEG00000002107	RBM17	100	80.590	Ailuropoda_melanoleuca
ENSXMAG00000008674	rbm17	100	90.370	ENSACIG00000006251	rbm17	100	90.370	Amphilophus_citrinellus
ENSXMAG00000008674	rbm17	100	93.812	ENSAOCG00000014892	rbm17	100	93.812	Amphiprion_ocellaris
ENSXMAG00000008674	rbm17	100	93.812	ENSAPEG00000022779	rbm17	100	93.812	Amphiprion_percula
ENSXMAG00000008674	rbm17	100	91.686	ENSATEG00000004406	rbm17	100	91.686	Anabas_testudineus
ENSXMAG00000008674	rbm17	100	81.327	ENSAPLG00000004190	RBM17	100	81.327	Anas_platyrhynchos
ENSXMAG00000008674	rbm17	89	77.660	ENSACAG00000005418	RBM17	99	77.660	Anolis_carolinensis
ENSXMAG00000008674	rbm17	100	81.572	ENSANAG00000030127	RBM17	95	88.136	Aotus_nancymaae
ENSXMAG00000008674	rbm17	100	70.588	ENSANAG00000019330	-	95	84.483	Aotus_nancymaae
ENSXMAG00000008674	rbm17	100	89.303	ENSACLG00000003928	rbm17	100	89.303	Astatotilapia_calliptera
ENSXMAG00000008674	rbm17	100	84.798	ENSAMXG00000005853	rbm17	100	84.323	Astyanax_mexicanus
ENSXMAG00000008674	rbm17	100	79.607	ENSBTAG00000011094	-	100	78.870	Bos_taurus
ENSXMAG00000008674	rbm17	100	80.835	ENSBTAG00000021951	RBM17	100	80.098	Bos_taurus
ENSXMAG00000008674	rbm17	73	34.884	WBGene00010233	F58B3.7	97	32.117	Caenorhabditis_elegans
ENSXMAG00000008674	rbm17	100	81.572	ENSCJAG00000020573	RBM17	100	80.835	Callithrix_jacchus
ENSXMAG00000008674	rbm17	100	81.327	ENSCAFG00000005206	RBM17	100	80.590	Canis_familiaris
ENSXMAG00000008674	rbm17	100	77.916	ENSCAFG00020005420	RBM17	100	78.660	Canis_lupus_dingo
ENSXMAG00000008674	rbm17	100	80.835	ENSCHIG00000023204	-	100	80.098	Capra_hircus
ENSXMAG00000008674	rbm17	100	78.624	ENSCHIG00000019921	-	100	77.887	Capra_hircus
ENSXMAG00000008674	rbm17	100	80.732	ENSTSYG00000001165	RBM17	99	87.288	Carlito_syrichta
ENSXMAG00000008674	rbm17	90	66.859	ENSCAPG00000006275	RBM17	100	67.622	Cavia_aperea
ENSXMAG00000008674	rbm17	100	77.340	ENSCPOG00000005679	RBM17	100	77.340	Cavia_porcellus
ENSXMAG00000008674	rbm17	100	81.572	ENSCCAG00000018655	RBM17	95	88.136	Cebus_capucinus
ENSXMAG00000008674	rbm17	100	81.081	ENSCATG00000041566	RBM17	95	88.136	Cercocebus_atys
ENSXMAG00000008674	rbm17	100	80.488	ENSCLAG00000012195	RBM17	99	79.756	Chinchilla_lanigera
ENSXMAG00000008674	rbm17	100	81.081	ENSCSAG00000013564	RBM17	100	80.344	Chlorocebus_sabaeus
ENSXMAG00000008674	rbm17	92	64.362	ENSCHOG00000005131	RBM17	100	63.564	Choloepus_hoffmanni
ENSXMAG00000008674	rbm17	100	81.818	ENSCPBG00000019836	RBM17	100	81.081	Chrysemys_picta_bellii
ENSXMAG00000008674	rbm17	100	46.715	ENSCSAVG00000008782	-	100	44.310	Ciona_savignyi
ENSXMAG00000008674	rbm17	97	73.913	ENSCANG00000023715	-	99	72.959	Colobus_angolensis_palliatus
ENSXMAG00000008674	rbm17	100	80.835	ENSCANG00000030987	RBM17	95	88.136	Colobus_angolensis_palliatus
ENSXMAG00000008674	rbm17	100	80.732	ENSCGRG00001013842	Rbm17	100	80.000	Cricetulus_griseus_chok1gshd
ENSXMAG00000008674	rbm17	100	66.071	ENSCGRG00001009256	-	100	62.245	Cricetulus_griseus_chok1gshd
ENSXMAG00000008674	rbm17	100	80.732	ENSCGRG00000006907	Rbm17	100	80.000	Cricetulus_griseus_crigri
ENSXMAG00000008674	rbm17	100	86.730	ENSCSEG00000018164	rbm17	100	86.603	Cynoglossus_semilaevis
ENSXMAG00000008674	rbm17	100	89.303	ENSCVAG00000002476	rbm17	100	88.916	Cyprinodon_variegatus
ENSXMAG00000008674	rbm17	100	77.069	ENSDARG00000031346	rbm17	100	79.905	Danio_rerio
ENSXMAG00000008674	rbm17	100	81.081	ENSDNOG00000035920	RBM17	100	80.344	Dasypus_novemcinctus
ENSXMAG00000008674	rbm17	99	38.128	FBgn0086683	Spf45	99	36.526	Drosophila_melanogaster
ENSXMAG00000008674	rbm17	86	79.602	ENSETEG00000006642	RBM17	84	84.286	Echinops_telfairi
ENSXMAG00000008674	rbm17	63	69.048	ENSEBUG00000010253	rbm17	84	69.048	Eptatretus_burgeri
ENSXMAG00000008674	rbm17	92	78.457	ENSEASG00005009236	-	100	78.457	Equus_asinus_asinus
ENSXMAG00000008674	rbm17	100	77.150	ENSEASG00005019205	-	100	77.396	Equus_asinus_asinus
ENSXMAG00000008674	rbm17	100	71.744	ENSECAG00000001379	-	100	71.744	Equus_caballus
ENSXMAG00000008674	rbm17	100	69.727	ENSECAG00000008939	RBM17	100	70.720	Equus_caballus
ENSXMAG00000008674	rbm17	86	64.000	ENSEEUG00000013077	RBM17	100	63.143	Erinaceus_europaeus
ENSXMAG00000008674	rbm17	100	85.781	ENSELUG00000006440	rbm17	100	85.315	Esox_lucius
ENSXMAG00000008674	rbm17	100	81.327	ENSFCAG00000031988	RBM17	100	80.590	Felis_catus
ENSXMAG00000008674	rbm17	100	80.344	ENSFALG00000001790	RBM17	100	79.607	Ficedula_albicollis
ENSXMAG00000008674	rbm17	100	80.488	ENSFDAG00000007470	RBM17	100	79.756	Fukomys_damarensis
ENSXMAG00000008674	rbm17	100	95.012	ENSFHEG00000001266	rbm17	100	93.458	Fundulus_heteroclitus
ENSXMAG00000008674	rbm17	99	81.010	ENSGMOG00000008438	rbm17	100	79.808	Gadus_morhua
ENSXMAG00000008674	rbm17	100	81.572	ENSGALG00000006332	RBM17	100	81.572	Gallus_gallus
ENSXMAG00000008674	rbm17	100	97.772	ENSGAFG00000019879	rbm17	100	97.772	Gambusia_affinis
ENSXMAG00000008674	rbm17	99	89.801	ENSGACG00000019174	rbm17	99	89.801	Gasterosteus_aculeatus
ENSXMAG00000008674	rbm17	100	81.818	ENSGAGG00000019906	RBM17	100	81.081	Gopherus_agassizii
ENSXMAG00000008674	rbm17	100	93.052	ENSHBUG00000016624	rbm17	100	93.052	Haplochromis_burtoni
ENSXMAG00000008674	rbm17	100	80.488	ENSHGLG00000011580	RBM17	100	79.756	Heterocephalus_glaber_female
ENSXMAG00000008674	rbm17	100	66.667	ENSHGLG00100010556	-	100	62.963	Heterocephalus_glaber_male
ENSXMAG00000008674	rbm17	100	80.488	ENSHGLG00100010460	RBM17	100	79.756	Heterocephalus_glaber_male
ENSXMAG00000008674	rbm17	99	88.305	ENSHCOG00000010865	rbm17	100	87.260	Hippocampus_comes
ENSXMAG00000008674	rbm17	100	79.905	ENSIPUG00000007699	Rbm17	100	79.196	Ictalurus_punctatus
ENSXMAG00000008674	rbm17	100	80.732	ENSSTOG00000013591	RBM17	100	80.000	Ictidomys_tridecemlineatus
ENSXMAG00000008674	rbm17	100	59.951	ENSJJAG00000000993	-	100	59.459	Jaculus_jaculus
ENSXMAG00000008674	rbm17	100	80.732	ENSJJAG00000022886	Rbm17	100	80.000	Jaculus_jaculus
ENSXMAG00000008674	rbm17	100	92.162	ENSKMAG00000021400	rbm17	100	92.162	Kryptolebias_marmoratus
ENSXMAG00000008674	rbm17	100	91.337	ENSLBEG00000000881	rbm17	100	90.261	Labrus_bergylta
ENSXMAG00000008674	rbm17	99	65.258	ENSLACG00000017297	RBM17	99	65.493	Latimeria_chalumnae
ENSXMAG00000008674	rbm17	100	83.824	ENSLOCG00000015659	rbm17	100	82.843	Lepisosteus_oculatus
ENSXMAG00000008674	rbm17	100	80.097	ENSLAFG00000011629	RBM17	100	79.369	Loxodonta_africana
ENSXMAG00000008674	rbm17	100	81.081	ENSMFAG00000035521	RBM17	95	88.136	Macaca_fascicularis
ENSXMAG00000008674	rbm17	100	81.081	ENSMMUG00000015152	RBM17	95	88.136	Macaca_mulatta
ENSXMAG00000008674	rbm17	100	81.081	ENSMNEG00000017264	RBM17	95	88.136	Macaca_nemestrina
ENSXMAG00000008674	rbm17	100	81.081	ENSMLEG00000029340	RBM17	95	88.136	Mandrillus_leucophaeus
ENSXMAG00000008674	rbm17	100	90.499	ENSMAMG00000000387	rbm17	100	90.974	Mastacembelus_armatus
ENSXMAG00000008674	rbm17	100	92.143	ENSMZEG00005015179	rbm17	100	91.905	Maylandia_zebra
ENSXMAG00000008674	rbm17	100	80.387	ENSMGAG00000003981	RBM17	100	80.387	Meleagris_gallopavo
ENSXMAG00000008674	rbm17	100	80.732	ENSMAUG00000019247	Rbm17	100	80.000	Mesocricetus_auratus
ENSXMAG00000008674	rbm17	100	75.121	ENSMICG00000041489	-	100	75.121	Microcebus_murinus
ENSXMAG00000008674	rbm17	100	80.732	ENSMICG00000003976	-	100	80.000	Microcebus_murinus
ENSXMAG00000008674	rbm17	93	64.474	ENSMOCG00000014517	-	99	64.474	Microtus_ochrogaster
ENSXMAG00000008674	rbm17	100	80.732	ENSMOCG00000011847	Rbm17	100	80.000	Microtus_ochrogaster
ENSXMAG00000008674	rbm17	100	83.619	ENSMMOG00000010264	rbm17	100	83.619	Mola_mola
ENSXMAG00000008674	rbm17	100	80.835	ENSMODG00000016648	RBM17	100	80.098	Monodelphis_domestica
ENSXMAG00000008674	rbm17	100	89.573	ENSMALG00000010597	rbm17	100	90.758	Monopterus_albus
ENSXMAG00000008674	rbm17	100	80.732	MGP_CAROLIEiJ_G0023173	Rbm17	100	80.000	Mus_caroli
ENSXMAG00000008674	rbm17	100	80.732	ENSMUSG00000037197	Rbm17	100	80.000	Mus_musculus
ENSXMAG00000008674	rbm17	100	80.976	MGP_PahariEiJ_G0019233	Rbm17	100	80.244	Mus_pahari
ENSXMAG00000008674	rbm17	100	80.732	MGP_SPRETEiJ_G0024091	Rbm17	100	80.000	Mus_spretus
ENSXMAG00000008674	rbm17	86	79.714	ENSMPUG00000016359	RBM17	96	78.857	Mustela_putorius_furo
ENSXMAG00000008674	rbm17	100	79.075	ENSMLUG00000002302	-	100	78.345	Myotis_lucifugus
ENSXMAG00000008674	rbm17	100	77.150	ENSMLUG00000025709	-	100	76.167	Myotis_lucifugus
ENSXMAG00000008674	rbm17	100	57.248	ENSNGAG00000000663	-	100	57.002	Nannospalax_galili
ENSXMAG00000008674	rbm17	100	80.732	ENSNGAG00000000741	Rbm17	100	80.000	Nannospalax_galili
ENSXMAG00000008674	rbm17	100	87.065	ENSNBRG00000018148	rbm17	100	87.065	Neolamprologus_brichardi
ENSXMAG00000008674	rbm17	100	81.081	ENSNLEG00000033350	RBM17	95	88.136	Nomascus_leucogenys
ENSXMAG00000008674	rbm17	100	75.676	ENSMEUG00000011347	RBM17	100	74.939	Notamacropus_eugenii
ENSXMAG00000008674	rbm17	100	70.270	ENSOPRG00000002993	RBM17	100	70.270	Ochotona_princeps
ENSXMAG00000008674	rbm17	100	80.535	ENSODEG00000004393	RBM17	100	79.805	Octodon_degus
ENSXMAG00000008674	rbm17	97	61.675	ENSODEG00000007286	-	99	60.101	Octodon_degus
ENSXMAG00000008674	rbm17	100	92.365	ENSONIG00000011838	rbm17	100	92.611	Oreochromis_niloticus
ENSXMAG00000008674	rbm17	100	80.147	ENSOANG00000015455	RBM17	100	79.902	Ornithorhynchus_anatinus
ENSXMAG00000008674	rbm17	100	91.211	ENSORLG00000028798	rbm17	100	91.211	Oryzias_latipes
ENSXMAG00000008674	rbm17	100	91.211	ENSORLG00020004593	rbm17	98	91.211	Oryzias_latipes_hni
ENSXMAG00000008674	rbm17	100	92.574	ENSORLG00015000033	rbm17	100	92.574	Oryzias_latipes_hsok
ENSXMAG00000008674	rbm17	100	91.211	ENSOMEG00000012060	rbm17	100	91.875	Oryzias_melastigma
ENSXMAG00000008674	rbm17	100	80.976	ENSOGAG00000015687	RBM17	100	80.244	Otolemur_garnettii
ENSXMAG00000008674	rbm17	100	80.835	ENSOARG00000012975	RBM17	100	80.098	Ovis_aries
ENSXMAG00000008674	rbm17	100	81.081	ENSPPAG00000032347	RBM17	95	88.136	Pan_paniscus
ENSXMAG00000008674	rbm17	100	81.327	ENSPPRG00000010706	RBM17	100	80.590	Panthera_pardus
ENSXMAG00000008674	rbm17	100	81.327	ENSPTIG00000007596	RBM17	100	80.590	Panthera_tigris_altaica
ENSXMAG00000008674	rbm17	100	81.081	ENSPTRG00000002265	RBM17	95	88.136	Pan_troglodytes
ENSXMAG00000008674	rbm17	100	81.081	ENSPANG00000023425	RBM17	95	88.136	Papio_anubis
ENSXMAG00000008674	rbm17	100	81.690	ENSPKIG00000025526	rbm17	100	79.625	Paramormyrops_kingsleyae
ENSXMAG00000008674	rbm17	100	76.675	ENSPKIG00000005048	-	100	76.675	Paramormyrops_kingsleyae
ENSXMAG00000008674	rbm17	100	80.732	ENSPSIG00000012332	RBM17	100	80.000	Pelodiscus_sinensis
ENSXMAG00000008674	rbm17	100	84.314	ENSPMGG00000007980	rbm17	100	84.314	Periophthalmus_magnuspinnatus
ENSXMAG00000008674	rbm17	100	80.732	ENSPEMG00000014320	Rbm17	100	80.000	Peromyscus_maniculatus_bairdii
ENSXMAG00000008674	rbm17	100	80.440	ENSPCIG00000019260	-	100	79.707	Phascolarctos_cinereus
ENSXMAG00000008674	rbm17	100	97.150	ENSPFOG00000013271	rbm17	100	97.150	Poecilia_formosa
ENSXMAG00000008674	rbm17	100	96.675	ENSPLAG00000004455	rbm17	100	96.675	Poecilia_latipinna
ENSXMAG00000008674	rbm17	100	97.277	ENSPMEG00000014864	rbm17	100	97.277	Poecilia_mexicana
ENSXMAG00000008674	rbm17	100	97.613	ENSPREG00000015589	rbm17	100	97.613	Poecilia_reticulata
ENSXMAG00000008674	rbm17	81	58.967	ENSPPYG00000019042	-	100	58.359	Pongo_abelii
ENSXMAG00000008674	rbm17	99	61.481	ENSPPYG00000019881	-	100	60.741	Pongo_abelii
ENSXMAG00000008674	rbm17	100	81.081	ENSPPYG00000002067	RBM17	100	80.344	Pongo_abelii
ENSXMAG00000008674	rbm17	100	73.710	ENSPCAG00000016879	RBM17	100	72.973	Procavia_capensis
ENSXMAG00000008674	rbm17	100	81.327	ENSPCOG00000027881	RBM17	100	80.590	Propithecus_coquereli
ENSXMAG00000008674	rbm17	100	72.727	ENSPVAG00000015499	RBM17	100	71.990	Pteropus_vampyrus
ENSXMAG00000008674	rbm17	100	82.090	ENSPNYG00000015274	rbm17	100	82.090	Pundamilia_nyererei
ENSXMAG00000008674	rbm17	100	84.323	ENSPNAG00000030046	rbm17	100	84.323	Pygocentrus_nattereri
ENSXMAG00000008674	rbm17	100	80.732	ENSRNOG00000018767	Rbm17	100	80.000	Rattus_norvegicus
ENSXMAG00000008674	rbm17	100	81.081	ENSRBIG00000043727	RBM17	95	88.136	Rhinopithecus_bieti
ENSXMAG00000008674	rbm17	100	81.081	ENSRROG00000044142	RBM17	95	88.136	Rhinopithecus_roxellana
ENSXMAG00000008674	rbm17	100	72.482	ENSSBOG00000023653	-	100	68.447	Saimiri_boliviensis_boliviensis
ENSXMAG00000008674	rbm17	100	81.327	ENSSBOG00000031661	-	93	87.826	Saimiri_boliviensis_boliviensis
ENSXMAG00000008674	rbm17	100	80.835	ENSSHAG00000012480	-	100	80.098	Sarcophilus_harrisii
ENSXMAG00000008674	rbm17	100	82.108	ENSSFOG00015009892	rbm17	100	82.108	Scleropages_formosus
ENSXMAG00000008674	rbm17	100	86.111	ENSSMAG00000012368	rbm17	100	86.111	Scophthalmus_maximus
ENSXMAG00000008674	rbm17	100	89.320	ENSSDUG00000015015	rbm17	100	90.049	Seriola_dumerili
ENSXMAG00000008674	rbm17	100	89.320	ENSSLDG00000014486	rbm17	100	90.049	Seriola_lalandi_dorsalis
ENSXMAG00000008674	rbm17	50	75.455	ENSSARG00000001792	-	79	89.024	Sorex_araneus
ENSXMAG00000008674	rbm17	99	81.773	ENSSPUG00000001036	RBM17	99	81.034	Sphenodon_punctatus
ENSXMAG00000008674	rbm17	100	93.564	ENSSPAG00000002338	rbm17	100	93.564	Stegastes_partitus
ENSXMAG00000008674	rbm17	100	80.835	ENSSSCG00000011134	RBM17	100	80.098	Sus_scrofa
ENSXMAG00000008674	rbm17	100	80.000	ENSTGUG00000002013	RBM17	100	80.000	Taeniopygia_guttata
ENSXMAG00000008674	rbm17	100	91.089	ENSTRUG00000010698	rbm17	100	91.089	Takifugu_rubripes
ENSXMAG00000008674	rbm17	100	89.163	ENSTNIG00000006892	rbm17	100	89.163	Tetraodon_nigroviridis
ENSXMAG00000008674	rbm17	100	61.165	ENSTBEG00000014686	RBM17	100	63.145	Tupaia_belangeri
ENSXMAG00000008674	rbm17	90	79.781	ENSTTRG00000001344	RBM17	100	79.781	Tursiops_truncatus
ENSXMAG00000008674	rbm17	100	77.916	ENSUAMG00000009499	RBM17	100	77.916	Ursus_americanus
ENSXMAG00000008674	rbm17	100	81.327	ENSUMAG00000012237	RBM17	100	80.590	Ursus_maritimus
ENSXMAG00000008674	rbm17	100	69.779	ENSVPAG00000005497	RBM17	100	69.779	Vicugna_pacos
ENSXMAG00000008674	rbm17	100	77.916	ENSVVUG00000006780	RBM17	100	78.660	Vulpes_vulpes
ENSXMAG00000008674	rbm17	99	77.970	ENSXETG00000018123	rbm17	100	77.475	Xenopus_tropicalis