EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000008730 (Gene tree)
Gene ID: 102235957
Gene Symbol: cnot6b
Alias: zgc:171797
Full Name: CCR4-NOT transcription complex subunit 6
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 20991 bases
Position: chr23:18096063-18117053
Accession: 102235957
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000008754	Exo_endo_phos	PF03372.23	3.3e-22	1	1
ENSXMAP00000040299	Exo_endo_phos	PF03372.23	3.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000008768	-	1608	-	ENSXMAP00000008754	535 (aa)	-	M4A2R0
ENSXMAT00000030763	-	6982	XM_005795309	ENSXMAP00000040299	558 (aa)	XP_005795366	UPI0003B46C62

Gene Model

Click here to download ENSXMAG00000008730's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000008730's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000008730	cnot6b	100	85.663	ENSG00000113300	CNOT6	100	94.737	Homo_sapiens
ENSXMAG00000008730	cnot6b	100	97.496	ENSAPOG00000009994	cnot6b	100	97.496	Acanthochromis_polyacanthus
ENSXMAG00000008730	cnot6b	100	85.714	ENSAMEG00000000949	CNOT6	99	85.714	Ailuropoda_melanoleuca
ENSXMAG00000008730	cnot6b	100	94.454	ENSACIG00000016566	cnot6b	100	94.454	Amphilophus_citrinellus
ENSXMAG00000008730	cnot6b	100	97.496	ENSAOCG00000006893	cnot6b	100	97.496	Amphiprion_ocellaris
ENSXMAG00000008730	cnot6b	100	97.496	ENSAPEG00000016949	cnot6b	100	97.496	Amphiprion_percula
ENSXMAG00000008730	cnot6b	100	94.097	ENSATEG00000007862	cnot6b	100	94.097	Anabas_testudineus
ENSXMAG00000008730	cnot6b	100	86.201	ENSAPLG00000012715	CNOT6	99	86.559	Anas_platyrhynchos
ENSXMAG00000008730	cnot6b	100	86.738	ENSACAG00000016548	CNOT6	100	86.738	Anolis_carolinensis
ENSXMAG00000008730	cnot6b	100	85.842	ENSANAG00000030436	CNOT6	96	85.842	Aotus_nancymaae
ENSXMAG00000008730	cnot6b	100	94.991	ENSACLG00000008279	cnot6b	100	94.991	Astatotilapia_calliptera
ENSXMAG00000008730	cnot6b	100	89.267	ENSAMXG00000019140	cnot6a	100	89.267	Astyanax_mexicanus
ENSXMAG00000008730	cnot6b	100	88.372	ENSAMXG00000034694	cnot6b	100	88.372	Astyanax_mexicanus
ENSXMAG00000008730	cnot6b	100	85.842	ENSBTAG00000017362	CNOT6	100	85.842	Bos_taurus
ENSXMAG00000008730	cnot6b	100	85.484	ENSCJAG00000009795	CNOT6	100	85.484	Callithrix_jacchus
ENSXMAG00000008730	cnot6b	100	86.022	ENSCAFG00000000464	CNOT6	100	86.022	Canis_familiaris
ENSXMAG00000008730	cnot6b	100	86.022	ENSCAFG00020002441	CNOT6	100	86.022	Canis_lupus_dingo
ENSXMAG00000008730	cnot6b	100	85.484	ENSCHIG00000019100	CNOT6	100	85.484	Capra_hircus
ENSXMAG00000008730	cnot6b	100	85.125	ENSTSYG00000003982	CNOT6	100	85.125	Carlito_syrichta
ENSXMAG00000008730	cnot6b	100	81.183	ENSCPOG00000035657	CNOT6	100	81.183	Cavia_porcellus
ENSXMAG00000008730	cnot6b	100	81.183	ENSCCAG00000033670	CNOT6	100	81.183	Cebus_capucinus
ENSXMAG00000008730	cnot6b	100	85.663	ENSCATG00000042014	CNOT6	100	85.663	Cercocebus_atys
ENSXMAG00000008730	cnot6b	100	84.588	ENSCLAG00000010489	CNOT6	100	84.588	Chinchilla_lanigera
ENSXMAG00000008730	cnot6b	100	85.663	ENSCSAG00000008165	CNOT6	100	85.663	Chlorocebus_sabaeus
ENSXMAG00000008730	cnot6b	100	85.125	ENSCHOG00000009680	CNOT6	100	85.484	Choloepus_hoffmanni
ENSXMAG00000008730	cnot6b	100	86.559	ENSCPBG00000008908	CNOT6	100	86.918	Chrysemys_picta_bellii
ENSXMAG00000008730	cnot6b	100	85.842	ENSCANG00000026756	CNOT6	100	85.842	Colobus_angolensis_palliatus
ENSXMAG00000008730	cnot6b	100	84.229	ENSCGRG00001011452	Cnot6	100	84.229	Cricetulus_griseus_chok1gshd
ENSXMAG00000008730	cnot6b	100	82.258	ENSCGRG00000010407	Cnot6	100	82.258	Cricetulus_griseus_crigri
ENSXMAG00000008730	cnot6b	100	95.886	ENSCSEG00000010939	cnot6b	100	95.886	Cynoglossus_semilaevis
ENSXMAG00000008730	cnot6b	100	98.387	ENSCVAG00000010538	cnot6b	100	98.387	Cyprinodon_variegatus
ENSXMAG00000008730	cnot6b	100	87.657	ENSDARG00000101072	cnot6b	100	87.657	Danio_rerio
ENSXMAG00000008730	cnot6b	100	88.909	ENSDARG00000008255	cnot6a	100	88.909	Danio_rerio
ENSXMAG00000008730	cnot6b	100	86.201	ENSDNOG00000041644	CNOT6	100	86.201	Dasypus_novemcinctus
ENSXMAG00000008730	cnot6b	100	76.882	ENSDORG00000001708	Cnot6	100	76.882	Dipodomys_ordii
ENSXMAG00000008730	cnot6b	100	69.107	ENSETEG00000006975	CNOT6	100	69.107	Echinops_telfairi
ENSXMAG00000008730	cnot6b	100	85.842	ENSEASG00005012794	-	100	85.842	Equus_asinus_asinus
ENSXMAG00000008730	cnot6b	90	80.639	ENSEASG00005012957	-	99	80.639	Equus_asinus_asinus
ENSXMAG00000008730	cnot6b	100	86.380	ENSECAG00000019325	CNOT6	100	86.380	Equus_caballus
ENSXMAG00000008730	cnot6b	100	81.004	ENSECAG00000012704	-	99	81.004	Equus_caballus
ENSXMAG00000008730	cnot6b	100	85.663	ENSEEUG00000015382	CNOT6	100	85.663	Erinaceus_europaeus
ENSXMAG00000008730	cnot6b	100	87.654	ENSELUG00000015981	cnot6b	99	87.654	Esox_lucius
ENSXMAG00000008730	cnot6b	100	86.762	ENSELUG00000024580	cnot6a	100	86.762	Esox_lucius
ENSXMAG00000008730	cnot6b	100	86.201	ENSFCAG00000001881	CNOT6	100	86.201	Felis_catus
ENSXMAG00000008730	cnot6b	100	86.380	ENSFALG00000007699	CNOT6	100	86.738	Ficedula_albicollis
ENSXMAG00000008730	cnot6b	100	84.229	ENSFDAG00000001999	CNOT6	100	84.229	Fukomys_damarensis
ENSXMAG00000008730	cnot6b	71	97.179	ENSFHEG00000013756	cnot6b	99	97.179	Fundulus_heteroclitus
ENSXMAG00000008730	cnot6b	95	93.006	ENSGMOG00000009767	cnot6b	99	93.006	Gadus_morhua
ENSXMAG00000008730	cnot6b	100	86.201	ENSGALG00000034316	CNOT6	100	86.559	Gallus_gallus
ENSXMAG00000008730	cnot6b	100	99.104	ENSGAFG00000008525	cnot6b	100	99.104	Gambusia_affinis
ENSXMAG00000008730	cnot6b	95	92.439	ENSGACG00000018046	cnot6b	99	92.439	Gasterosteus_aculeatus
ENSXMAG00000008730	cnot6b	100	71.864	ENSGAGG00000012176	CNOT6	100	72.222	Gopherus_agassizii
ENSXMAG00000008730	cnot6b	100	85.663	ENSGGOG00000003675	CNOT6	100	85.663	Gorilla_gorilla
ENSXMAG00000008730	cnot6b	100	95.170	ENSHBUG00000002819	cnot6b	100	95.170	Haplochromis_burtoni
ENSXMAG00000008730	cnot6b	100	84.588	ENSHGLG00000017756	CNOT6	100	84.588	Heterocephalus_glaber_female
ENSXMAG00000008730	cnot6b	100	84.588	ENSHGLG00100005747	CNOT6	100	84.588	Heterocephalus_glaber_male
ENSXMAG00000008730	cnot6b	100	94.097	ENSHCOG00000016176	cnot6b	100	94.097	Hippocampus_comes
ENSXMAG00000008730	cnot6b	100	89.088	ENSIPUG00000019831	cnot6a	100	89.088	Ictalurus_punctatus
ENSXMAG00000008730	cnot6b	100	89.445	ENSIPUG00000017482	cnot6b	100	89.445	Ictalurus_punctatus
ENSXMAG00000008730	cnot6b	100	85.663	ENSSTOG00000002803	CNOT6	100	85.663	Ictidomys_tridecemlineatus
ENSXMAG00000008730	cnot6b	100	85.125	ENSJJAG00000012296	Cnot6	100	85.125	Jaculus_jaculus
ENSXMAG00000008730	cnot6b	100	97.312	ENSKMAG00000004640	cnot6b	100	97.312	Kryptolebias_marmoratus
ENSXMAG00000008730	cnot6b	100	95.709	ENSLBEG00000027917	cnot6b	100	95.709	Labrus_bergylta
ENSXMAG00000008730	cnot6b	100	92.844	ENSLOCG00000010102	cnot6b	99	92.844	Lepisosteus_oculatus
ENSXMAG00000008730	cnot6b	100	86.380	ENSLAFG00000016742	CNOT6	100	86.380	Loxodonta_africana
ENSXMAG00000008730	cnot6b	100	85.663	ENSMFAG00000030867	CNOT6	100	85.663	Macaca_fascicularis
ENSXMAG00000008730	cnot6b	100	85.663	ENSMMUG00000018690	CNOT6	100	85.663	Macaca_mulatta
ENSXMAG00000008730	cnot6b	100	85.663	ENSMNEG00000038565	CNOT6	100	85.663	Macaca_nemestrina
ENSXMAG00000008730	cnot6b	100	85.663	ENSMLEG00000010555	CNOT6	100	85.663	Mandrillus_leucophaeus
ENSXMAG00000008730	cnot6b	100	97.317	ENSMAMG00000007515	cnot6b	100	97.317	Mastacembelus_armatus
ENSXMAG00000008730	cnot6b	100	94.991	ENSMZEG00005012899	cnot6b	100	94.991	Maylandia_zebra
ENSXMAG00000008730	cnot6b	100	84.946	ENSMAUG00000019798	Cnot6	100	84.946	Mesocricetus_auratus
ENSXMAG00000008730	cnot6b	98	77.798	ENSMICG00000028378	-	99	77.798	Microcebus_murinus
ENSXMAG00000008730	cnot6b	100	84.050	ENSMICG00000013018	-	100	84.050	Microcebus_murinus
ENSXMAG00000008730	cnot6b	100	84.946	ENSMOCG00000021662	Cnot6	100	84.946	Microtus_ochrogaster
ENSXMAG00000008730	cnot6b	100	92.487	ENSMMOG00000003227	cnot6b	100	92.487	Mola_mola
ENSXMAG00000008730	cnot6b	100	85.663	ENSMODG00000003979	CNOT6	100	86.022	Monodelphis_domestica
ENSXMAG00000008730	cnot6b	100	96.780	ENSMALG00000014251	cnot6b	100	96.780	Monopterus_albus
ENSXMAG00000008730	cnot6b	100	85.125	MGP_CAROLIEiJ_G0016277	Cnot6	100	85.125	Mus_caroli
ENSXMAG00000008730	cnot6b	100	85.125	ENSMUSG00000020362	Cnot6	100	85.125	Mus_musculus
ENSXMAG00000008730	cnot6b	100	85.125	MGP_PahariEiJ_G0017413	Cnot6	100	85.125	Mus_pahari
ENSXMAG00000008730	cnot6b	100	85.125	MGP_SPRETEiJ_G0017122	Cnot6	100	85.125	Mus_spretus
ENSXMAG00000008730	cnot6b	100	86.380	ENSMPUG00000000587	CNOT6	96	86.380	Mustela_putorius_furo
ENSXMAG00000008730	cnot6b	100	84.547	ENSMLUG00000010257	CNOT6	100	84.547	Myotis_lucifugus
ENSXMAG00000008730	cnot6b	100	84.229	ENSNGAG00000008269	Cnot6	100	84.588	Nannospalax_galili
ENSXMAG00000008730	cnot6b	100	95.170	ENSNBRG00000010798	cnot6b	100	95.170	Neolamprologus_brichardi
ENSXMAG00000008730	cnot6b	100	84.588	ENSNLEG00000002322	CNOT6	100	84.588	Nomascus_leucogenys
ENSXMAG00000008730	cnot6b	81	81.395	ENSMEUG00000000025	CNOT6	81	82.326	Notamacropus_eugenii
ENSXMAG00000008730	cnot6b	88	86.158	ENSOPRG00000008244	-	88	86.158	Ochotona_princeps
ENSXMAG00000008730	cnot6b	100	83.692	ENSODEG00000007041	CNOT6	100	83.692	Octodon_degus
ENSXMAG00000008730	cnot6b	75	94.326	ENSONIG00000013027	cnot6b	99	94.326	Oreochromis_niloticus
ENSXMAG00000008730	cnot6b	100	86.201	ENSOANG00000010226	CNOT6	100	86.201	Ornithorhynchus_anatinus
ENSXMAG00000008730	cnot6b	100	84.643	ENSOCUG00000011083	CNOT6	100	84.643	Oryctolagus_cuniculus
ENSXMAG00000008730	cnot6b	100	95.707	ENSORLG00000005059	cnot6b	100	95.707	Oryzias_latipes
ENSXMAG00000008730	cnot6b	100	95.707	ENSORLG00020012784	cnot6b	100	95.707	Oryzias_latipes_hni
ENSXMAG00000008730	cnot6b	94	95.220	ENSORLG00015022658	cnot6b	98	95.220	Oryzias_latipes_hsok
ENSXMAG00000008730	cnot6b	100	96.243	ENSOMEG00000005295	cnot6b	100	96.243	Oryzias_melastigma
ENSXMAG00000008730	cnot6b	94	84.762	ENSOGAG00000032470	CNOT6	100	84.762	Otolemur_garnettii
ENSXMAG00000008730	cnot6b	97	84.899	ENSOARG00000001003	CNOT6	100	84.899	Ovis_aries
ENSXMAG00000008730	cnot6b	100	85.663	ENSPPAG00000032253	CNOT6	100	85.663	Pan_paniscus
ENSXMAG00000008730	cnot6b	100	86.022	ENSPPRG00000011912	CNOT6	100	86.022	Panthera_pardus
ENSXMAG00000008730	cnot6b	100	86.022	ENSPTIG00000016794	CNOT6	100	86.022	Panthera_tigris_altaica
ENSXMAG00000008730	cnot6b	100	85.663	ENSPTRG00000017636	CNOT6	100	85.663	Pan_troglodytes
ENSXMAG00000008730	cnot6b	100	85.663	ENSPANG00000016191	CNOT6	100	85.663	Papio_anubis
ENSXMAG00000008730	cnot6b	100	90.877	ENSPKIG00000021368	cnot6b	100	90.877	Paramormyrops_kingsleyae
ENSXMAG00000008730	cnot6b	98	86.239	ENSPSIG00000017307	CNOT6	100	86.606	Pelodiscus_sinensis
ENSXMAG00000008730	cnot6b	100	94.633	ENSPMGG00000011238	cnot6b	100	94.633	Periophthalmus_magnuspinnatus
ENSXMAG00000008730	cnot6b	100	84.050	ENSPEMG00000000627	Cnot6	100	84.409	Peromyscus_maniculatus_bairdii
ENSXMAG00000008730	cnot6b	100	85.842	ENSPCIG00000020319	CNOT6	99	86.201	Phascolarctos_cinereus
ENSXMAG00000008730	cnot6b	100	99.462	ENSPFOG00000006291	cnot6b	100	99.462	Poecilia_formosa
ENSXMAG00000008730	cnot6b	100	99.252	ENSPLAG00000008266	cnot6b	100	99.252	Poecilia_latipinna
ENSXMAG00000008730	cnot6b	100	99.642	ENSPMEG00000009091	cnot6b	100	99.642	Poecilia_mexicana
ENSXMAG00000008730	cnot6b	100	97.670	ENSPREG00000003713	cnot6b	100	97.670	Poecilia_reticulata
ENSXMAG00000008730	cnot6b	100	85.663	ENSPPYG00000016137	CNOT6	100	85.663	Pongo_abelii
ENSXMAG00000008730	cnot6b	74	83.521	ENSPCAG00000005599	-	71	83.521	Procavia_capensis
ENSXMAG00000008730	cnot6b	100	79.928	ENSPCOG00000017359	CNOT6	100	80.645	Propithecus_coquereli
ENSXMAG00000008730	cnot6b	100	82.616	ENSPVAG00000003069	CNOT6	100	82.616	Pteropus_vampyrus
ENSXMAG00000008730	cnot6b	100	94.812	ENSPNYG00000000321	cnot6b	100	94.812	Pundamilia_nyererei
ENSXMAG00000008730	cnot6b	100	89.624	ENSPNAG00000029586	cnot6a	100	89.624	Pygocentrus_nattereri
ENSXMAG00000008730	cnot6b	100	89.267	ENSPNAG00000028816	cnot6b	100	89.267	Pygocentrus_nattereri
ENSXMAG00000008730	cnot6b	100	84.409	ENSRNOG00000054891	Cnot6	100	84.409	Rattus_norvegicus
ENSXMAG00000008730	cnot6b	100	85.484	ENSRBIG00000004309	CNOT6	100	85.484	Rhinopithecus_bieti
ENSXMAG00000008730	cnot6b	100	85.484	ENSRROG00000035378	CNOT6	100	85.484	Rhinopithecus_roxellana
ENSXMAG00000008730	cnot6b	100	85.842	ENSSBOG00000030494	CNOT6	100	85.842	Saimiri_boliviensis_boliviensis
ENSXMAG00000008730	cnot6b	100	85.663	ENSSHAG00000017436	CNOT6	100	86.022	Sarcophilus_harrisii
ENSXMAG00000008730	cnot6b	100	91.771	ENSSFOG00015015133	CNOT6	100	92.129	Scleropages_formosus
ENSXMAG00000008730	cnot6b	100	90.519	ENSSFOG00015022383	cnot6a	96	90.519	Scleropages_formosus
ENSXMAG00000008730	cnot6b	100	94.991	ENSSMAG00000003084	cnot6b	100	94.991	Scophthalmus_maximus
ENSXMAG00000008730	cnot6b	100	97.138	ENSSDUG00000004151	cnot6b	100	97.138	Seriola_dumerili
ENSXMAG00000008730	cnot6b	100	96.959	ENSSLDG00000004448	cnot6b	100	96.959	Seriola_lalandi_dorsalis
ENSXMAG00000008730	cnot6b	64	67.039	ENSSARG00000012650	-	100	67.039	Sorex_araneus
ENSXMAG00000008730	cnot6b	100	87.103	ENSSPUG00000007893	CNOT6	100	87.477	Sphenodon_punctatus
ENSXMAG00000008730	cnot6b	100	97.674	ENSSPAG00000000149	cnot6b	100	97.674	Stegastes_partitus
ENSXMAG00000008730	cnot6b	100	85.663	ENSSSCG00000014009	CNOT6	100	85.663	Sus_scrofa
ENSXMAG00000008730	cnot6b	100	86.022	ENSTGUG00000001119	CNOT6	100	86.380	Taeniopygia_guttata
ENSXMAG00000008730	cnot6b	100	93.369	ENSTRUG00000002818	cnot6b	100	93.369	Takifugu_rubripes
ENSXMAG00000008730	cnot6b	100	94.444	ENSTNIG00000004443	cnot6b	99	94.444	Tetraodon_nigroviridis
ENSXMAG00000008730	cnot6b	87	61.191	ENSTBEG00000017094	-	100	61.191	Tupaia_belangeri
ENSXMAG00000008730	cnot6b	100	85.842	ENSTTRG00000009363	CNOT6	100	85.842	Tursiops_truncatus
ENSXMAG00000008730	cnot6b	90	75.149	ENSUAMG00000004579	CNOT6	99	75.149	Ursus_americanus
ENSXMAG00000008730	cnot6b	100	81.880	ENSUMAG00000024577	CNOT6	100	81.880	Ursus_maritimus
ENSXMAG00000008730	cnot6b	84	91.892	ENSVPAG00000003593	CNOT6	83	91.892	Vicugna_pacos
ENSXMAG00000008730	cnot6b	100	86.022	ENSVVUG00000026940	CNOT6	100	86.022	Vulpes_vulpes
ENSXMAG00000008730	cnot6b	100	100.000	ENSXCOG00000003360	cnot6b	100	100.000	Xiphophorus_couchianus