EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000009151 (Gene tree)
Gene ID
102216790
Gene Symbol
lsm3
Alias
-
Full Name
LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
4220 bases
Position
chr20:4431874-4436093
Accession
102216790
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000009167LSMPF01423.223.7e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000009181-2286XM_005810643ENSXMAP00000009167102 (aa)XP_005810700M4A3X3
Gene Model
Click here to download ENSXMAG00000009151's gene model file
Pathways
Pathway IDPathway NameSource
xma03018RNA degradationKEGG
xma03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000009151's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000009151lsm310095.098ENSG00000170860LSM310095.098Homo_sapiens
ENSXMAG00000009151lsm3100100.000ENSAPOG00000018947lsm3100100.000Acanthochromis_polyacanthus
ENSXMAG00000009151lsm310095.098ENSAMEG00000009405LSM310095.098Ailuropoda_melanoleuca
ENSXMAG00000009151lsm310099.020ENSACIG00000004574lsm37199.020Amphilophus_citrinellus
ENSXMAG00000009151lsm3100100.000ENSAOCG00000007658lsm3100100.000Amphiprion_ocellaris
ENSXMAG00000009151lsm3100100.000ENSAPEG00000018621lsm3100100.000Amphiprion_percula
ENSXMAG00000009151lsm3100100.000ENSATEG00000005153lsm3100100.000Anabas_testudineus
ENSXMAG00000009151lsm39396.842ENSAPLG00000014499LSM310096.842Anas_platyrhynchos
ENSXMAG00000009151lsm310096.078ENSACAG00000013503LSM310096.078Anolis_carolinensis
ENSXMAG00000009151lsm310091.176ENSANAG00000002903-10091.176Aotus_nancymaae
ENSXMAG00000009151lsm310095.098ENSANAG00000034627LSM310095.098Aotus_nancymaae
ENSXMAG00000009151lsm395100.000ENSACLG00000001726-94100.000Astatotilapia_calliptera
ENSXMAG00000009151lsm310098.039ENSAMXG00000041214lsm310098.039Astyanax_mexicanus
ENSXMAG00000009151lsm39496.875ENSBTAG00000007363LSM310096.875Bos_taurus
ENSXMAG00000009151lsm310069.608WBGene00003077lsm-310069.608Caenorhabditis_elegans
ENSXMAG00000009151lsm310093.137ENSCAFG00000001760LSM310093.137Canis_familiaris
ENSXMAG00000009151lsm310085.047ENSCAFG00020020950-10085.047Canis_lupus_dingo
ENSXMAG00000009151lsm310093.137ENSCAFG00020021584-10093.137Canis_lupus_dingo
ENSXMAG00000009151lsm310092.157ENSCAFG00020026452-10092.157Canis_lupus_dingo
ENSXMAG00000009151lsm310086.275ENSCAFG00020016680-10086.275Canis_lupus_dingo
ENSXMAG00000009151lsm310093.137ENSCAFG00020017266-10093.137Canis_lupus_dingo
ENSXMAG00000009151lsm310095.098ENSCHIG00000024650LSM310095.098Capra_hircus
ENSXMAG00000009151lsm310096.078ENSTSYG00000005204-10096.078Carlito_syrichta
ENSXMAG00000009151lsm39977.228ENSTSYG00000028528-9977.228Carlito_syrichta
ENSXMAG00000009151lsm39496.875ENSCAPG00000015760LSM310096.875Cavia_aperea
ENSXMAG00000009151lsm310095.098ENSCPOG00000034071LSM310095.098Cavia_porcellus
ENSXMAG00000009151lsm310075.490ENSCCAG00000032763-10075.490Cebus_capucinus
ENSXMAG00000009151lsm310095.098ENSCCAG00000019503-10095.098Cebus_capucinus
ENSXMAG00000009151lsm310095.098ENSCCAG00000036499-10095.098Cebus_capucinus
ENSXMAG00000009151lsm310095.098ENSCATG00000039421LSM310095.098Cercocebus_atys
ENSXMAG00000009151lsm39975.248ENSCATG00000031630-9975.248Cercocebus_atys
ENSXMAG00000009151lsm310095.098ENSCLAG00000015997LSM310095.098Chinchilla_lanigera
ENSXMAG00000009151lsm310090.196ENSCSAG00000019525-10090.196Chlorocebus_sabaeus
ENSXMAG00000009151lsm310096.078ENSCPBG00000014531LSM310096.078Chrysemys_picta_bellii
ENSXMAG00000009151lsm310080.769ENSCSAVG00000009542-10080.769Ciona_savignyi
ENSXMAG00000009151lsm310092.157ENSCANG00000038037-10092.157Colobus_angolensis_palliatus
ENSXMAG00000009151lsm310093.137ENSCANG00000018782-10093.137Colobus_angolensis_palliatus
ENSXMAG00000009151lsm310095.098ENSCANG00000033944-10095.098Colobus_angolensis_palliatus
ENSXMAG00000009151lsm39880.000ENSCGRG00001011396-10080.000Cricetulus_griseus_chok1gshd
ENSXMAG00000009151lsm310095.098ENSCGRG00001017598Lsm310095.098Cricetulus_griseus_chok1gshd
ENSXMAG00000009151lsm310071.845ENSCGRG00001008639-10071.845Cricetulus_griseus_chok1gshd
ENSXMAG00000009151lsm39382.105ENSCGRG00000012129-10082.105Cricetulus_griseus_crigri
ENSXMAG00000009151lsm310095.098ENSCGRG00000016159Lsm310095.098Cricetulus_griseus_crigri
ENSXMAG00000009151lsm3100100.000ENSCSEG00000015071lsm377100.000Cynoglossus_semilaevis
ENSXMAG00000009151lsm310099.020ENSCVAG00000006933lsm310099.020Cyprinodon_variegatus
ENSXMAG00000009151lsm310096.078ENSDARG00000089663lsm310096.078Danio_rerio
ENSXMAG00000009151lsm310095.098ENSDNOG00000030808LSM310095.098Dasypus_novemcinctus
ENSXMAG00000009151lsm310095.098ENSDORG00000006894-10095.098Dipodomys_ordii
ENSXMAG00000009151lsm310075.490ENSDORG00000024490-10075.490Dipodomys_ordii
ENSXMAG00000009151lsm310078.641FBgn0051184LSm310078.641Drosophila_melanogaster
ENSXMAG00000009151lsm310095.098ENSETEG00000016207LSM310095.098Echinops_telfairi
ENSXMAG00000009151lsm310088.235ENSEBUG00000004943lsm310088.235Eptatretus_burgeri
ENSXMAG00000009151lsm310095.098ENSEASG00005015443LSM310095.098Equus_asinus_asinus
ENSXMAG00000009151lsm310095.098ENSECAG00000007803LSM310095.098Equus_caballus
ENSXMAG00000009151lsm310098.039ENSELUG00000018922lsm310098.039Esox_lucius
ENSXMAG00000009151lsm310072.549ENSFCAG00000044344-10072.549Felis_catus
ENSXMAG00000009151lsm310095.098ENSFCAG00000038453LSM310095.098Felis_catus
ENSXMAG00000009151lsm310096.078ENSFALG00000012644LSM310096.078Ficedula_albicollis
ENSXMAG00000009151lsm310095.098ENSFDAG00000011470LSM310095.098Fukomys_damarensis
ENSXMAG00000009151lsm3100100.000ENSFHEG00000000876lsm3100100.000Fundulus_heteroclitus
ENSXMAG00000009151lsm39397.895ENSGMOG00000011024lsm310097.895Gadus_morhua
ENSXMAG00000009151lsm3100100.000ENSGAFG00000013965lsm3100100.000Gambusia_affinis
ENSXMAG00000009151lsm3100100.000ENSGACG00000003488lsm3100100.000Gasterosteus_aculeatus
ENSXMAG00000009151lsm310096.078ENSGAGG00000025707LSM310096.078Gopherus_agassizii
ENSXMAG00000009151lsm310095.098ENSGGOG00000010006LSM310095.098Gorilla_gorilla
ENSXMAG00000009151lsm3100100.000ENSHBUG00000022399lsm3100100.000Haplochromis_burtoni
ENSXMAG00000009151lsm310095.098ENSHGLG00000000651LSM310095.098Heterocephalus_glaber_female
ENSXMAG00000009151lsm310075.490ENSHGLG00000015564-10075.490Heterocephalus_glaber_female
ENSXMAG00000009151lsm310095.098ENSHGLG00100011343LSM310095.098Heterocephalus_glaber_male
ENSXMAG00000009151lsm310075.490ENSHGLG00100010658-10075.490Heterocephalus_glaber_male
ENSXMAG00000009151lsm310099.020ENSHCOG00000013481lsm310099.020Hippocampus_comes
ENSXMAG00000009151lsm310098.039ENSIPUG00000009207lsm310098.039Ictalurus_punctatus
ENSXMAG00000009151lsm310095.098ENSSTOG00000006842LSM310095.098Ictidomys_tridecemlineatus
ENSXMAG00000009151lsm39972.549ENSJJAG00000018311-10072.549Jaculus_jaculus
ENSXMAG00000009151lsm310087.255ENSJJAG00000012797-10087.255Jaculus_jaculus
ENSXMAG00000009151lsm310095.098ENSJJAG00000017351Lsm310095.098Jaculus_jaculus
ENSXMAG00000009151lsm310099.020ENSKMAG00000015182lsm310099.020Kryptolebias_marmoratus
ENSXMAG00000009151lsm39697.959ENSLBEG00000021292lsm310097.959Labrus_bergylta
ENSXMAG00000009151lsm310096.078ENSLOCG00000013560lsm310096.078Lepisosteus_oculatus
ENSXMAG00000009151lsm310094.175ENSLAFG00000023308LSM310094.175Loxodonta_africana
ENSXMAG00000009151lsm310095.098ENSMFAG00000003185LSM310095.098Macaca_fascicularis
ENSXMAG00000009151lsm310072.549ENSMMUG00000043596-10072.549Macaca_mulatta
ENSXMAG00000009151lsm310095.098ENSMMUG00000023126LSM310095.098Macaca_mulatta
ENSXMAG00000009151lsm39675.510ENSMMUG00000002294-9575.510Macaca_mulatta
ENSXMAG00000009151lsm39977.228ENSMNEG00000037686-9977.228Macaca_nemestrina
ENSXMAG00000009151lsm310095.098ENSMNEG00000043632LSM310095.098Macaca_nemestrina
ENSXMAG00000009151lsm310095.098ENSMLEG00000036162LSM310095.098Mandrillus_leucophaeus
ENSXMAG00000009151lsm3100100.000ENSMAMG00000012807lsm3100100.000Mastacembelus_armatus
ENSXMAG00000009151lsm3100100.000ENSMZEG00005016682lsm373100.000Maylandia_zebra
ENSXMAG00000009151lsm39496.875ENSMGAG00000007776LSM310096.875Meleagris_gallopavo
ENSXMAG00000009151lsm310081.373ENSMICG00000027821-10081.373Microcebus_murinus
ENSXMAG00000009151lsm310094.118ENSMICG00000032361-10094.118Microcebus_murinus
ENSXMAG00000009151lsm310095.098ENSMOCG00000014269Lsm310095.098Microtus_ochrogaster
ENSXMAG00000009151lsm310099.020ENSMMOG00000020715lsm310099.020Mola_mola
ENSXMAG00000009151lsm310094.118ENSMODG00000007275LSM310094.118Monodelphis_domestica
ENSXMAG00000009151lsm3100100.000ENSMALG00000006485lsm3100100.000Monopterus_albus
ENSXMAG00000009151lsm310095.098ENSMUSG00000034192Lsm310095.098Mus_musculus
ENSXMAG00000009151lsm310095.098MGP_PahariEiJ_G0022402Lsm310095.098Mus_pahari
ENSXMAG00000009151lsm310095.098MGP_SPRETEiJ_G0029681Lsm310095.098Mus_spretus
ENSXMAG00000009151lsm39783.838ENSMPUG00000019120-9783.838Mustela_putorius_furo
ENSXMAG00000009151lsm38387.059ENSMPUG00000017256-10087.059Mustela_putorius_furo
ENSXMAG00000009151lsm310095.098ENSMLUG00000010677LSM310095.098Myotis_lucifugus
ENSXMAG00000009151lsm310090.196ENSMLUG00000024700-10090.196Myotis_lucifugus
ENSXMAG00000009151lsm310095.098ENSNGAG00000022450Lsm310095.098Nannospalax_galili
ENSXMAG00000009151lsm39977.228ENSNGAG00000010207-9977.228Nannospalax_galili
ENSXMAG00000009151lsm310070.588ENSNGAG00000013716-10070.588Nannospalax_galili
ENSXMAG00000009151lsm3100100.000ENSNBRG00000014318lsm3100100.000Neolamprologus_brichardi
ENSXMAG00000009151lsm310086.275ENSNLEG00000030229-10086.275Nomascus_leucogenys
ENSXMAG00000009151lsm310095.098ENSNLEG00000005079LSM310095.098Nomascus_leucogenys
ENSXMAG00000009151lsm310094.118ENSODEG00000019740-10094.118Octodon_degus
ENSXMAG00000009151lsm310088.235ENSODEG00000019403-10088.235Octodon_degus
ENSXMAG00000009151lsm310095.098ENSODEG00000001726LSM310095.098Octodon_degus
ENSXMAG00000009151lsm310093.137ENSODEG00000019158-10093.137Octodon_degus
ENSXMAG00000009151lsm3100100.000ENSONIG00000021369-100100.000Oreochromis_niloticus
ENSXMAG00000009151lsm3100100.000ENSONIG00000000370lsm3100100.000Oreochromis_niloticus
ENSXMAG00000009151lsm310094.118ENSOANG00000012273LSM310094.118Ornithorhynchus_anatinus
ENSXMAG00000009151lsm310095.098ENSOCUG00000027653-10095.098Oryctolagus_cuniculus
ENSXMAG00000009151lsm310091.176ENSOCUG00000011088-10091.176Oryctolagus_cuniculus
ENSXMAG00000009151lsm310098.039ENSORLG00000025900lsm310098.039Oryzias_latipes
ENSXMAG00000009151lsm310098.039ENSORLG00020007125lsm310098.039Oryzias_latipes_hni
ENSXMAG00000009151lsm310098.039ENSORLG00015002944lsm310098.039Oryzias_latipes_hsok
ENSXMAG00000009151lsm310098.039ENSOMEG00000001915lsm310098.039Oryzias_melastigma
ENSXMAG00000009151lsm310086.275ENSOGAG00000033051-10086.275Otolemur_garnettii
ENSXMAG00000009151lsm310095.098ENSOGAG00000007659-10095.098Otolemur_garnettii
ENSXMAG00000009151lsm39693.878ENSOGAG00000028858-10093.878Otolemur_garnettii
ENSXMAG00000009151lsm310094.175ENSOARG00000000600LSM310094.175Ovis_aries
ENSXMAG00000009151lsm310095.098ENSPPAG00000034074LSM310095.098Pan_paniscus
ENSXMAG00000009151lsm39988.119ENSPPRG00000010610-8988.119Panthera_pardus
ENSXMAG00000009151lsm310095.098ENSPPRG00000012912-10095.098Panthera_pardus
ENSXMAG00000009151lsm310094.118ENSPPRG00000020953-10094.118Panthera_pardus
ENSXMAG00000009151lsm310095.098ENSPTIG00000003463-10095.098Panthera_tigris_altaica
ENSXMAG00000009151lsm310095.098ENSPTIG00000013072-10095.098Panthera_tigris_altaica
ENSXMAG00000009151lsm310095.098ENSPTRG00000014650LSM310095.098Pan_troglodytes
ENSXMAG00000009151lsm310095.098ENSPANG00000009378LSM310095.098Papio_anubis
ENSXMAG00000009151lsm310073.529ENSPANG00000032192-10073.529Papio_anubis
ENSXMAG00000009151lsm310097.059ENSPKIG00000008037lsm39197.059Paramormyrops_kingsleyae
ENSXMAG00000009151lsm310096.078ENSPSIG00000015720LSM310096.078Pelodiscus_sinensis
ENSXMAG00000009151lsm39595.876ENSPMGG00000012103lsm39895.876Periophthalmus_magnuspinnatus
ENSXMAG00000009151lsm310095.098ENSPEMG00000015797Lsm310095.098Peromyscus_maniculatus_bairdii
ENSXMAG00000009151lsm310079.412ENSPEMG00000020213-10079.412Peromyscus_maniculatus_bairdii
ENSXMAG00000009151lsm3100100.000ENSPFOG00000008372lsm3100100.000Poecilia_formosa
ENSXMAG00000009151lsm3100100.000ENSPLAG00000000563lsm3100100.000Poecilia_latipinna
ENSXMAG00000009151lsm3100100.000ENSPMEG00000022052lsm3100100.000Poecilia_mexicana
ENSXMAG00000009151lsm3100100.000ENSPREG00000022485lsm3100100.000Poecilia_reticulata
ENSXMAG00000009151lsm310095.098ENSPPYG00000013402LSM310095.098Pongo_abelii
ENSXMAG00000009151lsm310095.098ENSPCAG00000017077LSM310095.098Procavia_capensis
ENSXMAG00000009151lsm310094.118ENSPCOG00000016217-10094.118Propithecus_coquereli
ENSXMAG00000009151lsm39473.958ENSPCOG00000014435-9873.958Propithecus_coquereli
ENSXMAG00000009151lsm310095.098ENSPVAG00000016795LSM310095.098Pteropus_vampyrus
ENSXMAG00000009151lsm3100100.000ENSPNYG00000009552lsm373100.000Pundamilia_nyererei
ENSXMAG00000009151lsm310098.039ENSPNAG00000023467lsm310098.039Pygocentrus_nattereri
ENSXMAG00000009151lsm310095.098ENSRNOG00000008733Lsm310095.098Rattus_norvegicus
ENSXMAG00000009151lsm310095.098ENSRBIG00000034399LSM310095.098Rhinopithecus_bieti
ENSXMAG00000009151lsm310079.412ENSRBIG00000043783-10079.412Rhinopithecus_bieti
ENSXMAG00000009151lsm310095.098ENSRROG00000033276-10095.098Rhinopithecus_roxellana
ENSXMAG00000009151lsm310076.471ENSRROG00000044056-10076.471Rhinopithecus_roxellana
ENSXMAG00000009151lsm310080.392ENSRROG00000039868-10080.392Rhinopithecus_roxellana
ENSXMAG00000009151lsm310084.314ENSRROG00000044047-10084.314Rhinopithecus_roxellana
ENSXMAG00000009151lsm310095.098ENSSBOG00000024310LSM310095.098Saimiri_boliviensis_boliviensis
ENSXMAG00000009151lsm310098.039ENSSFOG00015007071lsm310098.039Scleropages_formosus
ENSXMAG00000009151lsm3100100.000ENSSMAG00000001818lsm3100100.000Scophthalmus_maximus
ENSXMAG00000009151lsm3100100.000ENSSDUG00000006040lsm3100100.000Seriola_dumerili
ENSXMAG00000009151lsm3100100.000ENSSLDG00000006399lsm3100100.000Seriola_lalandi_dorsalis
ENSXMAG00000009151lsm35796.552ENSSARG00000005275-10096.552Sorex_araneus
ENSXMAG00000009151lsm39396.842ENSSPUG00000017047-9996.842Sphenodon_punctatus
ENSXMAG00000009151lsm310086.275ENSSPUG00000005394LSM310086.275Sphenodon_punctatus
ENSXMAG00000009151lsm310087.255ENSSPAG00000000934lsm310087.255Stegastes_partitus
ENSXMAG00000009151lsm39572.165ENSSSCG00000023718-9972.165Sus_scrofa
ENSXMAG00000009151lsm310095.098ENSSSCG00000011601LSM310095.098Sus_scrofa
ENSXMAG00000009151lsm310096.078ENSTGUG00000008327LSM310096.078Taeniopygia_guttata
ENSXMAG00000009151lsm310099.020ENSTRUG00000023175lsm310099.020Takifugu_rubripes
ENSXMAG00000009151lsm310099.020ENSTNIG00000005589lsm310099.020Tetraodon_nigroviridis
ENSXMAG00000009151lsm310085.294ENSTBEG00000001050-9985.294Tupaia_belangeri
ENSXMAG00000009151lsm310095.098ENSTTRG00000011197LSM310095.098Tursiops_truncatus
ENSXMAG00000009151lsm310095.098ENSUAMG00000017250-10095.098Ursus_americanus
ENSXMAG00000009151lsm310095.098ENSUMAG00000015905LSM310095.098Ursus_maritimus
ENSXMAG00000009151lsm39396.842ENSVPAG00000010709LSM310096.842Vicugna_pacos
ENSXMAG00000009151lsm310091.176ENSVVUG00000007332-9191.176Vulpes_vulpes
ENSXMAG00000009151lsm310091.176ENSVVUG00000029294-10091.176Vulpes_vulpes
ENSXMAG00000009151lsm310090.196ENSVVUG00000006481-10090.196Vulpes_vulpes
ENSXMAG00000009151lsm310089.216ENSVVUG00000005684-10089.216Vulpes_vulpes
ENSXMAG00000009151lsm310086.275ENSVVUG00000024228-10086.275Vulpes_vulpes
ENSXMAG00000009151lsm310095.098ENSXETG00000011534lsm310095.098Xenopus_tropicalis
ENSXMAG00000009151lsm3100100.000ENSXCOG00000017432LSM3100100.000Xiphophorus_couchianus

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