EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000009217 (Gene tree)
Gene ID: 102229053
Gene Symbol: gpatch8
Alias: fa12a04|fb30h12|gpatc8|wu:fa12a04|wu:fb30h12|wu:fj32a09
Full Name: G-patch domain containing 8
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 23154 bases
Position: chr16:7775628-7798781
Accession: 102229053
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000024552	zf-C2H2_jaz	PF12171.8	5.6e-06	1	1
ENSXMAP00000009241	zf-C2H2_jaz	PF12171.8	5.7e-06	1	1
ENSXMAP00000033501	zf-C2H2_jaz	PF12171.8	5.9e-06	1	1
ENSXMAP00000033501	G-patch	PF01585.23	1.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000028547	-	4319	XM_005796713	ENSXMAP00000024552	1411 (aa)	XP_005796770	UPI0003B3DC10
ENSXMAT00000023195	-	4631	XM_005796710	ENSXMAP00000033501	1490 (aa)	XP_005796767	UPI0003B3CED1
ENSXMAT00000009255	-	4369	XM_005796711	ENSXMAP00000009241	1427 (aa)	XP_005796768	M4A447

Gene Model

Click here to download ENSXMAG00000009217's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000009217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000009217	gpatch8	100	83.322	ENSAPOG00000023938	gpatch8	100	83.656	Acanthochromis_polyacanthus
ENSXMAG00000009217	gpatch8	100	82.290	ENSACIG00000012241	gpatch8	100	82.623	Amphilophus_citrinellus
ENSXMAG00000009217	gpatch8	100	83.122	ENSAOCG00000018102	gpatch8	100	83.522	Amphiprion_ocellaris
ENSXMAG00000009217	gpatch8	100	83.055	ENSAPEG00000016776	gpatch8	100	83.456	Amphiprion_percula
ENSXMAG00000009217	gpatch8	100	80.667	ENSATEG00000003247	gpatch8	100	80.733	Anabas_testudineus
ENSXMAG00000009217	gpatch8	100	82.055	ENSACLG00000004165	gpatch8	100	81.988	Astatotilapia_calliptera
ENSXMAG00000009217	gpatch8	100	77.793	ENSCSEG00000021277	gpatch8	100	77.793	Cynoglossus_semilaevis
ENSXMAG00000009217	gpatch8	100	87.658	ENSCVAG00000013477	gpatch8	100	88.259	Cyprinodon_variegatus
ENSXMAG00000009217	gpatch8	100	63.154	ENSDARG00000059768	gpatch8	55	60.768	Danio_rerio
ENSXMAG00000009217	gpatch8	59	49.474	ENSEBUG00000005749	gpatch8	54	47.218	Eptatretus_burgeri
ENSXMAG00000009217	gpatch8	61	63.495	ENSELUG00000019920	gpatch8	56	62.929	Esox_lucius
ENSXMAG00000009217	gpatch8	56	80.935	ENSFHEG00000005791	gpatch8	55	80.866	Fundulus_heteroclitus
ENSXMAG00000009217	gpatch8	100	96.512	ENSGAFG00000018138	gpatch8	100	96.512	Gambusia_affinis
ENSXMAG00000009217	gpatch8	100	81.558	ENSHBUG00000002669	gpatch8	100	81.957	Haplochromis_burtoni
ENSXMAG00000009217	gpatch8	74	56.743	ENSHGLG00100010738	GPATCH8	64	62.810	Heterocephalus_glaber_male
ENSXMAG00000009217	gpatch8	100	72.788	ENSHCOG00000017518	gpatch8	96	71.022	Hippocampus_comes
ENSXMAG00000009217	gpatch8	59	58.913	ENSIPUG00000015431	gpatch8	55	58.080	Ictalurus_punctatus
ENSXMAG00000009217	gpatch8	100	83.311	ENSKMAG00000018364	gpatch8	55	79.783	Kryptolebias_marmoratus
ENSXMAG00000009217	gpatch8	100	79.242	ENSLBEG00000023352	gpatch8	100	79.308	Labrus_bergylta
ENSXMAG00000009217	gpatch8	61	81.034	ENSLOCG00000012265	gpatch8	72	75.177	Lepisosteus_oculatus
ENSXMAG00000009217	gpatch8	100	80.929	ENSMAMG00000001618	gpatch8	100	80.859	Mastacembelus_armatus
ENSXMAG00000009217	gpatch8	100	81.988	ENSMZEG00005022584	gpatch8	100	81.921	Maylandia_zebra
ENSXMAG00000009217	gpatch8	61	76.739	ENSMMOG00000020472	gpatch8	55	75.420	Mola_mola
ENSXMAG00000009217	gpatch8	50	63.584	ENSMLUG00000013840	GPATCH8	52	64.497	Myotis_lucifugus
ENSXMAG00000009217	gpatch8	100	81.691	ENSNBRG00000016402	gpatch8	100	82.157	Neolamprologus_brichardi
ENSXMAG00000009217	gpatch8	100	79.105	ENSONIG00000001292	gpatch8	100	80.983	Oreochromis_niloticus
ENSXMAG00000009217	gpatch8	61	76.247	ENSORLG00000028497	gpatch8	56	74.522	Oryzias_latipes
ENSXMAG00000009217	gpatch8	61	75.380	ENSORLG00020006656	gpatch8	56	73.684	Oryzias_latipes_hni
ENSXMAG00000009217	gpatch8	61	76.030	ENSORLG00015019797	gpatch8	56	74.282	Oryzias_latipes_hsok
ENSXMAG00000009217	gpatch8	56	73.986	ENSOMEG00000023809	gpatch8	55	74.279	Oryzias_melastigma
ENSXMAG00000009217	gpatch8	61	52.834	ENSPKIG00000018753	gpatch8	56	54.930	Paramormyrops_kingsleyae
ENSXMAG00000009217	gpatch8	100	96.848	ENSPFOG00000014833	gpatch8	100	96.848	Poecilia_formosa
ENSXMAG00000009217	gpatch8	100	96.848	ENSPLAG00000001035	gpatch8	100	96.848	Poecilia_latipinna
ENSXMAG00000009217	gpatch8	100	96.647	ENSPMEG00000024032	gpatch8	100	96.647	Poecilia_mexicana
ENSXMAG00000009217	gpatch8	100	95.573	ENSPREG00000008911	gpatch8	100	95.439	Poecilia_reticulata
ENSXMAG00000009217	gpatch8	100	81.855	ENSPNYG00000009426	gpatch8	100	82.121	Pundamilia_nyererei
ENSXMAG00000009217	gpatch8	59	61.052	ENSPNAG00000016200	gpatch8	58	61.257	Pygocentrus_nattereri
ENSXMAG00000009217	gpatch8	56	56.192	ENSSFOG00015004299	GPATCH8	55	56.425	Scleropages_formosus
ENSXMAG00000009217	gpatch8	55	55.962	ENSSFOG00015021377	-	55	55.910	Scleropages_formosus
ENSXMAG00000009217	gpatch8	100	81.968	ENSSDUG00000018065	gpatch8	100	81.555	Seriola_dumerili
ENSXMAG00000009217	gpatch8	100	83.079	ENSSLDG00000009225	gpatch8	100	82.814	Seriola_lalandi_dorsalis
ENSXMAG00000009217	gpatch8	100	83.322	ENSSPAG00000011368	gpatch8	100	83.456	Stegastes_partitus
ENSXMAG00000009217	gpatch8	100	75.933	ENSTRUG00000020474	gpatch8	100	75.384	Takifugu_rubripes
ENSXMAG00000009217	gpatch8	59	62.500	ENSTBEG00000009486	GPATCH8	56	62.132	Tupaia_belangeri
ENSXMAG00000009217	gpatch8	72	52.405	ENSTTRG00000010527	GPATCH8	71	51.244	Tursiops_truncatus
ENSXMAG00000009217	gpatch8	58	56.840	ENSVPAG00000006937	GPATCH8	67	57.358	Vicugna_pacos
ENSXMAG00000009217	gpatch8	100	99.362	ENSXCOG00000016680	gpatch8	100	99.196	Xiphophorus_couchianus