EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000009333 (Gene tree)
Gene ID: 102230228
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 12522 bases
Position: chr14:5902813-5915334
Accession: 102230228
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000009357	RRM_1	PF00076.22	5.6e-13	1	1
ENSXMAP00000041557	RRM_1	PF00076.22	5.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000025368	-	3522	XM_023346329	ENSXMAP00000041557	306 (aa)	XP_023202097	UPI000293BC24
ENSXMAT00000009371	-	3638	XM_005813168	ENSXMAP00000009357	306 (aa)	XP_005813225	M4A4G3

Gene Model

Click here to download ENSXMAG00000009333's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000009333's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000009333	-	73	53.540	ENSG00000184672	RALYL	91	77.922	Homo_sapiens
ENSXMAG00000009333	-	93	85.563	ENSAPOG00000006963	hnrnpc	92	86.972	Acanthochromis_polyacanthus
ENSXMAG00000009333	-	89	87.956	ENSACIG00000000270	-	99	85.424	Amphilophus_citrinellus
ENSXMAG00000009333	-	96	69.805	ENSACIG00000016568	-	90	76.786	Amphilophus_citrinellus
ENSXMAG00000009333	-	93	85.211	ENSAOCG00000003896	-	92	86.620	Amphiprion_ocellaris
ENSXMAG00000009333	-	82	74.803	ENSAOCG00000021616	-	87	75.000	Amphiprion_ocellaris
ENSXMAG00000009333	-	83	75.581	ENSAPEG00000019962	-	88	75.451	Amphiprion_percula
ENSXMAG00000009333	-	93	85.211	ENSAPEG00000001489	-	92	86.620	Amphiprion_percula
ENSXMAG00000009333	-	100	84.466	ENSATEG00000011734	-	100	83.819	Anabas_testudineus
ENSXMAG00000009333	-	86	76.030	ENSATEG00000018006	-	78	85.446	Anabas_testudineus
ENSXMAG00000009333	-	73	48.954	ENSAPLG00000015574	RALYL	79	52.941	Anas_platyrhynchos
ENSXMAG00000009333	-	73	48.954	ENSACAG00000028464	RALYL	78	51.695	Anolis_carolinensis
ENSXMAG00000009333	-	73	55.066	ENSANAG00000023383	RALYL	93	51.111	Aotus_nancymaae
ENSXMAG00000009333	-	87	74.170	ENSACLG00000005707	-	92	77.289	Astatotilapia_calliptera
ENSXMAG00000009333	-	100	84.691	ENSACLG00000013636	-	95	85.915	Astatotilapia_calliptera
ENSXMAG00000009333	-	100	85.016	ENSACLG00000000995	-	100	84.365	Astatotilapia_calliptera
ENSXMAG00000009333	-	85	75.769	ENSAMXG00000034915	zgc:55733	91	73.962	Astyanax_mexicanus
ENSXMAG00000009333	-	66	74.510	ENSAMXG00000042946	hnrnpc	97	72.251	Astyanax_mexicanus
ENSXMAG00000009333	-	73	53.982	ENSCJAG00000000402	RALYL	93	50.186	Callithrix_jacchus
ENSXMAG00000009333	-	87	46.454	ENSCPOG00000012314	RALYL	93	48.214	Cavia_porcellus
ENSXMAG00000009333	-	87	50.185	ENSCCAG00000025003	RALYL	75	77.922	Cebus_capucinus
ENSXMAG00000009333	-	73	53.540	ENSCATG00000042145	RALYL	78	55.111	Cercocebus_atys
ENSXMAG00000009333	-	73	50.840	ENSCLAG00000005228	RALYL	93	48.214	Chinchilla_lanigera
ENSXMAG00000009333	-	69	50.661	ENSCHOG00000013228	RALYL	74	51.770	Choloepus_hoffmanni
ENSXMAG00000009333	-	73	53.540	ENSCANG00000039144	RALYL	78	55.111	Colobus_angolensis_palliatus
ENSXMAG00000009333	-	87	45.936	ENSCGRG00001009241	Ralyl	94	48.936	Cricetulus_griseus_chok1gshd
ENSXMAG00000009333	-	70	76.389	ENSCSEG00000019769	-	72	77.358	Cynoglossus_semilaevis
ENSXMAG00000009333	-	77	75.105	ENSCSEG00000021349	-	84	71.795	Cynoglossus_semilaevis
ENSXMAG00000009333	-	96	76.610	ENSCVAG00000002797	-	98	76.289	Cyprinodon_variegatus
ENSXMAG00000009333	-	82	78.125	ENSCVAG00000016981	-	87	74.306	Cyprinodon_variegatus
ENSXMAG00000009333	-	79	73.663	ENSDARG00000053810	hnrnpc	86	73.646	Danio_rerio
ENSXMAG00000009333	-	91	74.552	ENSDARG00000103845	zgc:55733	94	75.573	Danio_rerio
ENSXMAG00000009333	-	73	50.209	ENSDORG00000003721	Ralyl	94	48.399	Dipodomys_ordii
ENSXMAG00000009333	-	53	54.857	ENSETEG00000014028	RALYL	80	60.127	Echinops_telfairi
ENSXMAG00000009333	-	73	47.577	ENSEBUG00000006049	RALYL	93	41.606	Eptatretus_burgeri
ENSXMAG00000009333	-	69	47.085	ENSEBUG00000012363	hnrnpc	65	46.847	Eptatretus_burgeri
ENSXMAG00000009333	-	73	50.628	ENSEEUG00000007202	RALYL	80	53.782	Erinaceus_europaeus
ENSXMAG00000009333	-	78	78.824	ENSELUG00000007714	-	96	76.056	Esox_lucius
ENSXMAG00000009333	-	83	78.125	ENSELUG00000004132	-	93	76.978	Esox_lucius
ENSXMAG00000009333	-	69	56.682	ENSFALG00000008647	RALYL	96	58.333	Ficedula_albicollis
ENSXMAG00000009333	-	83	72.894	ENSFHEG00000007278	-	90	71.096	Fundulus_heteroclitus
ENSXMAG00000009333	-	93	89.789	ENSFHEG00000003605	-	93	89.789	Fundulus_heteroclitus
ENSXMAG00000009333	-	73	52.632	ENSGALG00000036938	RALYL	78	53.361	Gallus_gallus
ENSXMAG00000009333	-	95	70.946	ENSGAFG00000020992	-	95	71.375	Gambusia_affinis
ENSXMAG00000009333	-	100	95.425	ENSGAFG00000020486	-	100	95.425	Gambusia_affinis
ENSXMAG00000009333	-	87	74.539	ENSGACG00000017772	-	99	75.836	Gasterosteus_aculeatus
ENSXMAG00000009333	-	71	68.919	ENSGACG00000018932	-	85	71.226	Gasterosteus_aculeatus
ENSXMAG00000009333	-	73	53.540	ENSGGOG00000000841	RALYL	78	55.111	Gorilla_gorilla
ENSXMAG00000009333	-	100	85.342	ENSHBUG00000018342	-	100	84.691	Haplochromis_burtoni
ENSXMAG00000009333	-	99	69.159	ENSHBUG00000010527	-	87	76.596	Haplochromis_burtoni
ENSXMAG00000009333	-	73	50.840	ENSHGLG00000004866	RALYL	93	48.214	Heterocephalus_glaber_female
ENSXMAG00000009333	-	73	50.840	ENSHGLG00100017480	RALYL	93	48.214	Heterocephalus_glaber_male
ENSXMAG00000009333	-	84	72.426	ENSHCOG00000012333	hnrnpc	95	70.508	Hippocampus_comes
ENSXMAG00000009333	-	85	74.615	ENSIPUG00000008666	zgc:55733	92	79.439	Ictalurus_punctatus
ENSXMAG00000009333	-	84	76.062	ENSIPUG00000011271	hnrnpc	96	77.027	Ictalurus_punctatus
ENSXMAG00000009333	-	73	49.791	ENSSTOG00000012583	RALYL	95	49.470	Ictidomys_tridecemlineatus
ENSXMAG00000009333	-	92	86.525	ENSKMAG00000011170	-	91	86.972	Kryptolebias_marmoratus
ENSXMAG00000009333	-	82	75.099	ENSKMAG00000018265	-	86	76.157	Kryptolebias_marmoratus
ENSXMAG00000009333	-	88	80.741	ENSLBEG00000006979	-	91	80.741	Labrus_bergylta
ENSXMAG00000009333	-	85	74.905	ENSLBEG00000006193	-	86	75.986	Labrus_bergylta
ENSXMAG00000009333	-	89	76.596	ENSLBEG00000024418	-	91	75.180	Labrus_bergylta
ENSXMAG00000009333	-	86	67.778	ENSLOCG00000002560	hnrnpc	93	70.182	Lepisosteus_oculatus
ENSXMAG00000009333	-	73	53.540	ENSMNEG00000033288	RALYL	78	55.111	Macaca_nemestrina
ENSXMAG00000009333	-	73	53.540	ENSMLEG00000038284	RALYL	78	55.111	Mandrillus_leucophaeus
ENSXMAG00000009333	-	93	83.509	ENSMAMG00000012236	-	92	85.263	Mastacembelus_armatus
ENSXMAG00000009333	-	86	75.655	ENSMAMG00000008033	-	94	76.812	Mastacembelus_armatus
ENSXMAG00000009333	-	99	69.159	ENSMZEG00005024249	-	87	76.596	Maylandia_zebra
ENSXMAG00000009333	-	100	85.016	ENSMZEG00005020460	-	100	84.365	Maylandia_zebra
ENSXMAG00000009333	-	87	45.936	ENSMAUG00000015149	Ralyl	94	48.936	Mesocricetus_auratus
ENSXMAG00000009333	-	73	53.744	ENSMICG00000005558	RALYL	78	77.922	Microcebus_murinus
ENSXMAG00000009333	-	87	45.230	ENSMOCG00000017371	Ralyl	94	48.227	Microtus_ochrogaster
ENSXMAG00000009333	-	81	76.305	ENSMMOG00000019520	-	88	76.604	Mola_mola
ENSXMAG00000009333	-	83	84.706	ENSMMOG00000021465	-	93	84.211	Mola_mola
ENSXMAG00000009333	-	83	74.118	ENSMALG00000007520	-	98	74.570	Monopterus_albus
ENSXMAG00000009333	-	86	78.409	ENSMALG00000014623	-	86	76.895	Monopterus_albus
ENSXMAG00000009333	-	87	45.583	ENSMUSG00000039717	Ralyl	91	76.623	Mus_musculus
ENSXMAG00000009333	-	73	51.046	ENSMPUG00000010724	RALYL	78	52.521	Mustela_putorius_furo
ENSXMAG00000009333	-	87	46.290	ENSNGAG00000013375	Ralyl	94	48.582	Nannospalax_galili
ENSXMAG00000009333	-	89	87.179	ENSNBRG00000004912	-	89	86.989	Neolamprologus_brichardi
ENSXMAG00000009333	-	99	66.460	ENSNBRG00000015676	-	87	76.596	Neolamprologus_brichardi
ENSXMAG00000009333	-	73	53.982	ENSNLEG00000002702	RALYL	74	55.111	Nomascus_leucogenys
ENSXMAG00000009333	-	58	47.938	ENSOPRG00000013650	-	98	46.269	Ochotona_princeps
ENSXMAG00000009333	-	73	51.261	ENSODEG00000001012	RALYL	93	48.571	Octodon_degus
ENSXMAG00000009333	-	99	68.847	ENSONIG00000018350	-	87	76.241	Oreochromis_niloticus
ENSXMAG00000009333	-	92	82.578	ENSONIG00000007859	-	99	84.321	Oreochromis_niloticus
ENSXMAG00000009333	-	100	76.948	ENSORLG00000009999	-	100	76.623	Oryzias_latipes
ENSXMAG00000009333	-	82	74.427	ENSORLG00000003144	-	95	70.625	Oryzias_latipes
ENSXMAG00000009333	-	100	76.623	ENSORLG00020018228	hnrnpc	100	76.299	Oryzias_latipes_hni
ENSXMAG00000009333	-	82	74.427	ENSORLG00015009460	-	85	75.610	Oryzias_latipes_hsok
ENSXMAG00000009333	-	100	76.948	ENSORLG00015019755	-	100	76.623	Oryzias_latipes_hsok
ENSXMAG00000009333	-	82	77.255	ENSOMEG00000022665	-	86	78.214	Oryzias_melastigma
ENSXMAG00000009333	-	87	77.612	ENSOMEG00000020488	-	100	77.994	Oryzias_melastigma
ENSXMAG00000009333	-	73	53.540	ENSPPAG00000038705	RALYL	78	55.111	Pan_paniscus
ENSXMAG00000009333	-	73	53.509	ENSPPRG00000018612	RALYL	78	56.140	Panthera_pardus
ENSXMAG00000009333	-	73	53.509	ENSPTIG00000020331	RALYL	78	56.140	Panthera_tigris_altaica
ENSXMAG00000009333	-	73	53.540	ENSPTRG00000020381	RALYL	78	55.111	Pan_troglodytes
ENSXMAG00000009333	-	73	53.540	ENSPANG00000029305	RALYL	78	55.111	Papio_anubis
ENSXMAG00000009333	-	91	74.035	ENSPKIG00000022837	-	86	79.061	Paramormyrops_kingsleyae
ENSXMAG00000009333	-	91	73.519	ENSPKIG00000008592	-	87	75.627	Paramormyrops_kingsleyae
ENSXMAG00000009333	-	73	48.954	ENSPSIG00000011135	RALYL	78	52.941	Pelodiscus_sinensis
ENSXMAG00000009333	-	67	77.670	ENSPMGG00000017774	-	86	66.505	Periophthalmus_magnuspinnatus
ENSXMAG00000009333	-	70	83.333	ENSPMGG00000013144	-	80	83.019	Periophthalmus_magnuspinnatus
ENSXMAG00000009333	-	87	45.936	ENSPEMG00000016447	Ralyl	94	48.936	Peromyscus_maniculatus_bairdii
ENSXMAG00000009333	-	69	52.632	ENSPMAG00000002407	RALYL	96	52.655	Petromyzon_marinus
ENSXMAG00000009333	-	95	68.831	ENSPFOG00000002643	-	87	76.408	Poecilia_formosa
ENSXMAG00000009333	-	100	94.463	ENSPFOG00000001583	-	100	94.463	Poecilia_formosa
ENSXMAG00000009333	-	82	76.378	ENSPLAG00000000061	-	86	76.408	Poecilia_latipinna
ENSXMAG00000009333	-	100	94.771	ENSPLAG00000015305	-	100	94.771	Poecilia_latipinna
ENSXMAG00000009333	-	82	75.984	ENSPMEG00000016524	-	87	75.704	Poecilia_mexicana
ENSXMAG00000009333	-	100	95.098	ENSPMEG00000004802	-	100	95.098	Poecilia_mexicana
ENSXMAG00000009333	-	100	93.791	ENSPREG00000007928	-	100	93.791	Poecilia_reticulata
ENSXMAG00000009333	-	82	75.984	ENSPREG00000001852	-	92	75.899	Poecilia_reticulata
ENSXMAG00000009333	-	73	51.261	ENSPVAG00000010821	RALYL	78	53.390	Pteropus_vampyrus
ENSXMAG00000009333	-	87	74.170	ENSPNYG00000003747	-	91	76.727	Pundamilia_nyererei
ENSXMAG00000009333	-	91	85.560	ENSPNYG00000020293	-	92	85.874	Pundamilia_nyererei
ENSXMAG00000009333	-	81	75.806	ENSPNAG00000015686	hnrnpc	88	74.525	Pygocentrus_nattereri
ENSXMAG00000009333	-	85	71.642	ENSPNAG00000019200	zgc:55733	87	71.326	Pygocentrus_nattereri
ENSXMAG00000009333	-	73	53.540	ENSRROG00000023925	RALYL	80	75.949	Rhinopithecus_roxellana
ENSXMAG00000009333	-	93	65.614	ENSSFOG00015012015	-	98	70.149	Scleropages_formosus
ENSXMAG00000009333	-	83	74.809	ENSSFOG00015012924	-	94	78.545	Scleropages_formosus
ENSXMAG00000009333	-	95	65.646	ENSSMAG00000011147	-	96	69.776	Scophthalmus_maximus
ENSXMAG00000009333	-	93	81.469	ENSSMAG00000013592	-	91	82.517	Scophthalmus_maximus
ENSXMAG00000009333	-	98	71.565	ENSSDUG00000006730	-	87	77.698	Seriola_dumerili
ENSXMAG00000009333	-	93	85.915	ENSSDUG00000001723	-	100	83.766	Seriola_dumerili
ENSXMAG00000009333	-	86	77.358	ENSSLDG00000007474	-	92	77.860	Seriola_lalandi_dorsalis
ENSXMAG00000009333	-	91	85.663	ENSSLDG00000007454	-	92	86.170	Seriola_lalandi_dorsalis
ENSXMAG00000009333	-	92	85.409	ENSSPAG00000023204	-	92	86.268	Stegastes_partitus
ENSXMAG00000009333	-	98	69.841	ENSSPAG00000013996	-	87	76.157	Stegastes_partitus
ENSXMAG00000009333	-	71	50.000	ENSTGUG00000011689	RALYL	78	53.680	Taeniopygia_guttata
ENSXMAG00000009333	-	86	79.771	ENSTRUG00000020158	-	89	81.481	Takifugu_rubripes
ENSXMAG00000009333	-	83	76.628	ENSTNIG00000007427	-	88	77.206	Tetraodon_nigroviridis
ENSXMAG00000009333	-	83	73.438	ENSTNIG00000000334	-	98	73.408	Tetraodon_nigroviridis
ENSXMAG00000009333	-	70	46.154	ENSTBEG00000005551	RALYL	88	48.472	Tupaia_belangeri
ENSXMAG00000009333	-	73	50.000	ENSTTRG00000015762	RALYL	78	52.790	Tursiops_truncatus
ENSXMAG00000009333	-	73	49.339	ENSVPAG00000008501	RALYL	78	51.982	Vicugna_pacos
ENSXMAG00000009333	-	88	91.852	ENSXCOG00000006552	-	86	93.182	Xiphophorus_couchianus
ENSXMAG00000009333	-	51	83.537	ENSXCOG00000019434	-	85	74.752	Xiphophorus_couchianus
ENSXMAG00000009333	-	82	75.591	ENSXMAG00000022849	-	89	75.899	Xiphophorus_maculatus