EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000009545 (Gene tree)
Gene ID: 102225498
Gene Symbol: cstf3
Alias: cleavage stimulation factor|3 pre-RNA|subunit 3|wu:fa99c02|wu:fb18b09|zgc:56028
Full Name: cleavage stimulation factor subunit 3
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 20016 bases
Position: chr4:14311096-14331111
Accession: 102225498
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000009584	Suf	PF05843.14	1.5e-83	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000009598	-	2857	XM_023332208	ENSXMAP00000009584	716 (aa)	XP_023187976	M4A540

Gene Model

Click here to download ENSXMAG00000009545's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000009545's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000009545	cstf3	100	90.808	ENSG00000176102	CSTF3	100	90.808	Homo_sapiens
ENSXMAG00000009545	cstf3	100	97.207	ENSAPOG00000014054	cstf3	100	97.207	Acanthochromis_polyacanthus
ENSXMAG00000009545	cstf3	99	91.243	ENSAMEG00000007187	CSTF3	98	91.243	Ailuropoda_melanoleuca
ENSXMAG00000009545	cstf3	87	91.974	ENSACIG00000005539	cstf3	100	91.974	Amphilophus_citrinellus
ENSXMAG00000009545	cstf3	100	97.067	ENSAOCG00000010930	cstf3	100	97.067	Amphiprion_ocellaris
ENSXMAG00000009545	cstf3	100	97.067	ENSAPEG00000007903	cstf3	100	97.067	Amphiprion_percula
ENSXMAG00000009545	cstf3	100	96.927	ENSATEG00000000190	cstf3	100	96.927	Anabas_testudineus
ENSXMAG00000009545	cstf3	99	91.384	ENSAPLG00000007217	CSTF3	100	91.384	Anas_platyrhynchos
ENSXMAG00000009545	cstf3	100	90.947	ENSACAG00000002823	CSTF3	100	90.947	Anolis_carolinensis
ENSXMAG00000009545	cstf3	100	90.808	ENSANAG00000020699	CSTF3	100	90.880	Aotus_nancymaae
ENSXMAG00000009545	cstf3	100	96.788	ENSACLG00000007820	cstf3	100	96.788	Astatotilapia_calliptera
ENSXMAG00000009545	cstf3	100	91.643	ENSAMXG00000014198	cstf3	100	91.922	Astyanax_mexicanus
ENSXMAG00000009545	cstf3	100	90.808	ENSBTAG00000008617	CSTF3	100	91.098	Bos_taurus
ENSXMAG00000009545	cstf3	97	47.755	WBGene00006307	suf-1	99	47.619	Caenorhabditis_elegans
ENSXMAG00000009545	cstf3	100	90.808	ENSCJAG00000005533	CSTF3	100	90.880	Callithrix_jacchus
ENSXMAG00000009545	cstf3	100	90.808	ENSCAFG00000007264	CSTF3	100	90.808	Canis_familiaris
ENSXMAG00000009545	cstf3	99	91.384	ENSCAFG00020002715	CSTF3	98	91.384	Canis_lupus_dingo
ENSXMAG00000009545	cstf3	98	89.900	ENSCHIG00000016418	CSTF3	100	90.880	Capra_hircus
ENSXMAG00000009545	cstf3	99	91.667	ENSTSYG00000000451	CSTF3	99	96.214	Carlito_syrichta
ENSXMAG00000009545	cstf3	83	88.389	ENSCAPG00000010958	CSTF3	98	88.389	Cavia_aperea
ENSXMAG00000009545	cstf3	100	90.947	ENSCPOG00000005545	CSTF3	100	90.947	Cavia_porcellus
ENSXMAG00000009545	cstf3	100	90.808	ENSCCAG00000024790	CSTF3	96	96.214	Cebus_capucinus
ENSXMAG00000009545	cstf3	100	90.808	ENSCATG00000007080	CSTF3	100	90.880	Cercocebus_atys
ENSXMAG00000009545	cstf3	100	90.808	ENSCLAG00000016179	CSTF3	100	90.808	Chinchilla_lanigera
ENSXMAG00000009545	cstf3	78	96.617	ENSCHOG00000002497	CSTF3	79	96.617	Choloepus_hoffmanni
ENSXMAG00000009545	cstf3	100	90.808	ENSCPBG00000006753	CSTF3	100	90.808	Chrysemys_picta_bellii
ENSXMAG00000009545	cstf3	99	62.136	ENSCING00000006401	-	99	62.136	Ciona_intestinalis
ENSXMAG00000009545	cstf3	98	61.322	ENSCSAVG00000004851	-	100	61.322	Ciona_savignyi
ENSXMAG00000009545	cstf3	100	90.808	ENSCANG00000035468	CSTF3	100	90.880	Colobus_angolensis_palliatus
ENSXMAG00000009545	cstf3	100	90.669	ENSCGRG00001014773	Cstf3	100	90.669	Cricetulus_griseus_chok1gshd
ENSXMAG00000009545	cstf3	100	90.669	ENSCGRG00000004142	Cstf3	100	90.669	Cricetulus_griseus_crigri
ENSXMAG00000009545	cstf3	100	95.810	ENSCSEG00000014283	cstf3	100	95.810	Cynoglossus_semilaevis
ENSXMAG00000009545	cstf3	100	98.743	ENSCVAG00000019739	cstf3	100	98.743	Cyprinodon_variegatus
ENSXMAG00000009545	cstf3	100	93.584	ENSDARG00000018904	cstf3	100	93.584	Danio_rerio
ENSXMAG00000009545	cstf3	99	91.049	ENSDNOG00000007366	CSTF3	99	91.049	Dasypus_novemcinctus
ENSXMAG00000009545	cstf3	99	83.077	ENSDORG00000005898	Cstf3	100	83.077	Dipodomys_ordii
ENSXMAG00000009545	cstf3	99	56.088	FBgn0003559	su(f)	99	56.088	Drosophila_melanogaster
ENSXMAG00000009545	cstf3	89	85.670	ENSETEG00000017097	CSTF3	90	85.670	Echinops_telfairi
ENSXMAG00000009545	cstf3	84	73.798	ENSEBUG00000015459	cstf3	96	73.798	Eptatretus_burgeri
ENSXMAG00000009545	cstf3	99	89.972	ENSEASG00005019884	CSTF3	96	96.214	Equus_asinus_asinus
ENSXMAG00000009545	cstf3	99	89.972	ENSECAG00000023338	CSTF3	96	96.214	Equus_caballus
ENSXMAG00000009545	cstf3	100	85.933	ENSEEUG00000015167	CSTF3	100	85.933	Erinaceus_europaeus
ENSXMAG00000009545	cstf3	100	94.421	ENSELUG00000023393	cstf3	100	94.421	Esox_lucius
ENSXMAG00000009545	cstf3	100	90.947	ENSFCAG00000030711	CSTF3	100	90.947	Felis_catus
ENSXMAG00000009545	cstf3	93	93.223	ENSFALG00000010764	CSTF3	100	90.169	Ficedula_albicollis
ENSXMAG00000009545	cstf3	100	90.947	ENSFDAG00000012082	CSTF3	100	90.947	Fukomys_damarensis
ENSXMAG00000009545	cstf3	100	98.743	ENSFHEG00000020623	cstf3	100	98.743	Fundulus_heteroclitus
ENSXMAG00000009545	cstf3	100	93.315	ENSGMOG00000012275	cstf3	100	93.315	Gadus_morhua
ENSXMAG00000009545	cstf3	100	90.669	ENSGALG00000011685	CSTF3	100	90.669	Gallus_gallus
ENSXMAG00000009545	cstf3	100	99.441	ENSGAFG00000002181	cstf3	100	99.441	Gambusia_affinis
ENSXMAG00000009545	cstf3	100	95.810	ENSGACG00000015997	cstf3	100	95.810	Gasterosteus_aculeatus
ENSXMAG00000009545	cstf3	100	90.808	ENSGAGG00000006200	CSTF3	100	90.808	Gopherus_agassizii
ENSXMAG00000009545	cstf3	99	85.593	ENSGGOG00000026591	CSTF3	96	91.314	Gorilla_gorilla
ENSXMAG00000009545	cstf3	100	96.927	ENSHBUG00000016656	cstf3	100	96.927	Haplochromis_burtoni
ENSXMAG00000009545	cstf3	100	90.808	ENSHGLG00000017834	CSTF3	100	90.808	Heterocephalus_glaber_female
ENSXMAG00000009545	cstf3	100	90.808	ENSHGLG00100018042	CSTF3	100	90.808	Heterocephalus_glaber_male
ENSXMAG00000009545	cstf3	100	92.179	ENSHCOG00000015218	cstf3	100	92.179	Hippocampus_comes
ENSXMAG00000009545	cstf3	100	92.608	ENSIPUG00000013170	CSTF3	100	92.608	Ictalurus_punctatus
ENSXMAG00000009545	cstf3	100	90.808	ENSSTOG00000013306	CSTF3	100	90.808	Ictidomys_tridecemlineatus
ENSXMAG00000009545	cstf3	99	81.215	ENSJJAG00000018430	Cstf3	98	81.215	Jaculus_jaculus
ENSXMAG00000009545	cstf3	100	94.972	ENSKMAG00000010916	cstf3	100	94.972	Kryptolebias_marmoratus
ENSXMAG00000009545	cstf3	100	95.531	ENSLBEG00000002306	cstf3	100	95.531	Labrus_bergylta
ENSXMAG00000009545	cstf3	100	89.679	ENSLACG00000017296	CSTF3	100	89.679	Latimeria_chalumnae
ENSXMAG00000009545	cstf3	100	93.733	ENSLOCG00000004415	cstf3	100	93.733	Lepisosteus_oculatus
ENSXMAG00000009545	cstf3	100	90.669	ENSLAFG00000008712	CSTF3	100	90.669	Loxodonta_africana
ENSXMAG00000009545	cstf3	100	90.808	ENSMFAG00000029516	CSTF3	100	90.880	Macaca_fascicularis
ENSXMAG00000009545	cstf3	100	90.808	ENSMMUG00000002542	CSTF3	100	90.808	Macaca_mulatta
ENSXMAG00000009545	cstf3	100	90.808	ENSMNEG00000021807	CSTF3	100	90.880	Macaca_nemestrina
ENSXMAG00000009545	cstf3	100	90.808	ENSMLEG00000039594	CSTF3	97	93.987	Mandrillus_leucophaeus
ENSXMAG00000009545	cstf3	100	96.369	ENSMAMG00000020423	cstf3	100	96.369	Mastacembelus_armatus
ENSXMAG00000009545	cstf3	100	96.788	ENSMZEG00005012082	cstf3	100	96.788	Maylandia_zebra
ENSXMAG00000009545	cstf3	100	90.529	ENSMGAG00000001383	CSTF3	100	90.529	Meleagris_gallopavo
ENSXMAG00000009545	cstf3	100	90.529	ENSMAUG00000002487	Cstf3	100	90.529	Mesocricetus_auratus
ENSXMAG00000009545	cstf3	100	90.808	ENSMICG00000004784	CSTF3	100	90.880	Microcebus_murinus
ENSXMAG00000009545	cstf3	100	90.669	ENSMOCG00000017583	Cstf3	100	90.669	Microtus_ochrogaster
ENSXMAG00000009545	cstf3	99	96.469	ENSMMOG00000016026	cstf3	95	96.469	Mola_mola
ENSXMAG00000009545	cstf3	100	80.362	ENSMODG00000025205	-	100	80.362	Monodelphis_domestica
ENSXMAG00000009545	cstf3	100	90.947	ENSMODG00000009745	-	100	90.947	Monodelphis_domestica
ENSXMAG00000009545	cstf3	100	96.927	ENSMALG00000012050	cstf3	100	96.927	Monopterus_albus
ENSXMAG00000009545	cstf3	100	90.669	MGP_CAROLIEiJ_G0024026	Cstf3	100	90.669	Mus_caroli
ENSXMAG00000009545	cstf3	100	90.669	ENSMUSG00000027176	Cstf3	100	90.669	Mus_musculus
ENSXMAG00000009545	cstf3	100	90.669	MGP_PahariEiJ_G0025464	Cstf3	100	90.669	Mus_pahari
ENSXMAG00000009545	cstf3	100	90.669	MGP_SPRETEiJ_G0024939	Cstf3	100	90.669	Mus_spretus
ENSXMAG00000009545	cstf3	100	90.669	ENSMPUG00000011457	CSTF3	100	90.669	Mustela_putorius_furo
ENSXMAG00000009545	cstf3	99	91.384	ENSMLUG00000003073	-	99	91.384	Myotis_lucifugus
ENSXMAG00000009545	cstf3	100	88.162	ENSMLUG00000026022	-	100	88.162	Myotis_lucifugus
ENSXMAG00000009545	cstf3	100	90.669	ENSNGAG00000010677	Cstf3	100	90.669	Nannospalax_galili
ENSXMAG00000009545	cstf3	87	96.950	ENSNBRG00000007345	cstf3	100	96.950	Neolamprologus_brichardi
ENSXMAG00000009545	cstf3	100	90.808	ENSNLEG00000017901	CSTF3	100	90.880	Nomascus_leucogenys
ENSXMAG00000009545	cstf3	73	90.057	ENSMEUG00000005640	-	100	90.057	Notamacropus_eugenii
ENSXMAG00000009545	cstf3	67	88.158	ENSOPRG00000000199	-	67	88.158	Ochotona_princeps
ENSXMAG00000009545	cstf3	89	79.403	ENSODEG00000006311	-	97	79.403	Octodon_degus
ENSXMAG00000009545	cstf3	100	90.808	ENSODEG00000016737	-	100	90.808	Octodon_degus
ENSXMAG00000009545	cstf3	100	96.788	ENSONIG00000005563	cstf3	100	96.788	Oreochromis_niloticus
ENSXMAG00000009545	cstf3	90	90.462	ENSOANG00000015140	CSTF3	100	90.462	Ornithorhynchus_anatinus
ENSXMAG00000009545	cstf3	100	90.529	ENSOCUG00000015417	CSTF3	100	90.529	Oryctolagus_cuniculus
ENSXMAG00000009545	cstf3	100	95.810	ENSORLG00000009762	cstf3	100	95.810	Oryzias_latipes
ENSXMAG00000009545	cstf3	100	95.810	ENSORLG00020005540	cstf3	100	95.810	Oryzias_latipes_hni
ENSXMAG00000009545	cstf3	100	95.670	ENSORLG00015003551	cstf3	100	95.670	Oryzias_latipes_hsok
ENSXMAG00000009545	cstf3	100	96.089	ENSOMEG00000003848	cstf3	100	96.089	Oryzias_melastigma
ENSXMAG00000009545	cstf3	100	90.430	ENSOGAG00000010229	CSTF3	100	90.430	Otolemur_garnettii
ENSXMAG00000009545	cstf3	90	90.980	ENSOARG00000017271	CSTF3	99	90.980	Ovis_aries
ENSXMAG00000009545	cstf3	99	87.994	ENSPPAG00000027358	CSTF3	99	87.994	Pan_paniscus
ENSXMAG00000009545	cstf3	100	90.947	ENSPPRG00000016852	CSTF3	100	90.947	Panthera_pardus
ENSXMAG00000009545	cstf3	100	90.947	ENSPTIG00000008716	CSTF3	100	90.947	Panthera_tigris_altaica
ENSXMAG00000009545	cstf3	100	90.808	ENSPTRG00000003485	CSTF3	100	90.808	Pan_troglodytes
ENSXMAG00000009545	cstf3	100	90.808	ENSPANG00000013722	CSTF3	97	93.987	Papio_anubis
ENSXMAG00000009545	cstf3	100	93.584	ENSPKIG00000023648	cstf3	100	93.584	Paramormyrops_kingsleyae
ENSXMAG00000009545	cstf3	100	90.808	ENSPSIG00000009173	CSTF3	100	90.808	Pelodiscus_sinensis
ENSXMAG00000009545	cstf3	77	96.898	ENSPMGG00000000164	cstf3	99	96.898	Periophthalmus_magnuspinnatus
ENSXMAG00000009545	cstf3	100	90.529	ENSPEMG00000011481	Cstf3	100	90.529	Peromyscus_maniculatus_bairdii
ENSXMAG00000009545	cstf3	99	79.296	ENSPMAG00000007282	cstf3	100	78.889	Petromyzon_marinus
ENSXMAG00000009545	cstf3	100	88.317	ENSPCIG00000026406	-	100	91.360	Phascolarctos_cinereus
ENSXMAG00000009545	cstf3	99	76.297	ENSPCIG00000030419	-	89	76.578	Phascolarctos_cinereus
ENSXMAG00000009545	cstf3	100	99.441	ENSPFOG00000017239	cstf3	100	99.441	Poecilia_formosa
ENSXMAG00000009545	cstf3	100	99.441	ENSPLAG00000009456	cstf3	100	99.441	Poecilia_latipinna
ENSXMAG00000009545	cstf3	100	99.441	ENSPMEG00000010320	cstf3	100	99.441	Poecilia_mexicana
ENSXMAG00000009545	cstf3	100	99.302	ENSPREG00000013549	cstf3	100	99.302	Poecilia_reticulata
ENSXMAG00000009545	cstf3	100	90.808	ENSPPYG00000003375	CSTF3	100	90.808	Pongo_abelii
ENSXMAG00000009545	cstf3	71	95.819	ENSPCAG00000008025	-	71	95.819	Procavia_capensis
ENSXMAG00000009545	cstf3	100	85.794	ENSPCOG00000014417	CSTF3	100	85.794	Propithecus_coquereli
ENSXMAG00000009545	cstf3	100	85.655	ENSPVAG00000002350	CSTF3	100	85.655	Pteropus_vampyrus
ENSXMAG00000009545	cstf3	100	96.927	ENSPNYG00000018259	cstf3	100	96.927	Pundamilia_nyererei
ENSXMAG00000009545	cstf3	100	94.142	ENSPNAG00000020182	cstf3	100	94.142	Pygocentrus_nattereri
ENSXMAG00000009545	cstf3	87	90.400	ENSRNOG00000012089	Cstf3	100	90.400	Rattus_norvegicus
ENSXMAG00000009545	cstf3	99	89.972	ENSRBIG00000044258	CSTF3	100	90.880	Rhinopithecus_bieti
ENSXMAG00000009545	cstf3	100	90.808	ENSRROG00000043450	CSTF3	100	90.880	Rhinopithecus_roxellana
ENSXMAG00000009545	cstf3	100	90.808	ENSSBOG00000024764	CSTF3	98	96.214	Saimiri_boliviensis_boliviensis
ENSXMAG00000009545	cstf3	100	81.476	ENSSHAG00000003135	-	99	81.476	Sarcophilus_harrisii
ENSXMAG00000009545	cstf3	99	91.049	ENSSHAG00000018128	-	99	91.049	Sarcophilus_harrisii
ENSXMAG00000009545	cstf3	100	93.863	ENSSFOG00015022133	cstf3	100	93.863	Scleropages_formosus
ENSXMAG00000009545	cstf3	100	95.950	ENSSMAG00000002197	cstf3	100	95.950	Scophthalmus_maximus
ENSXMAG00000009545	cstf3	100	97.067	ENSSDUG00000020426	cstf3	100	97.067	Seriola_dumerili
ENSXMAG00000009545	cstf3	100	97.067	ENSSLDG00000025649	cstf3	100	97.067	Seriola_lalandi_dorsalis
ENSXMAG00000009545	cstf3	100	90.669	ENSSARG00000000391	CSTF3	100	90.669	Sorex_araneus
ENSXMAG00000009545	cstf3	96	90.738	ENSSPUG00000010546	CSTF3	100	90.738	Sphenodon_punctatus
ENSXMAG00000009545	cstf3	100	97.067	ENSSPAG00000004958	cstf3	100	97.067	Stegastes_partitus
ENSXMAG00000009545	cstf3	99	90.603	ENSSSCG00000040954	CSTF3	99	90.603	Sus_scrofa
ENSXMAG00000009545	cstf3	99	90.960	ENSTGUG00000005010	CSTF3	100	90.960	Taeniopygia_guttata
ENSXMAG00000009545	cstf3	100	95.531	ENSTRUG00000004959	cstf3	100	95.531	Takifugu_rubripes
ENSXMAG00000009545	cstf3	99	96.469	ENSTNIG00000013811	cstf3	99	96.469	Tetraodon_nigroviridis
ENSXMAG00000009545	cstf3	89	88.474	ENSTBEG00000001544	CSTF3	90	88.474	Tupaia_belangeri
ENSXMAG00000009545	cstf3	100	88.022	ENSTTRG00000016366	CSTF3	100	88.022	Tursiops_truncatus
ENSXMAG00000009545	cstf3	99	91.102	ENSUMAG00000018971	CSTF3	100	90.560	Ursus_maritimus
ENSXMAG00000009545	cstf3	100	90.669	ENSVPAG00000007800	CSTF3	100	90.669	Vicugna_pacos
ENSXMAG00000009545	cstf3	99	91.384	ENSVVUG00000014938	CSTF3	100	90.880	Vulpes_vulpes
ENSXMAG00000009545	cstf3	66	42.116	ENSXETG00000017946	-	99	42.116	Xenopus_tropicalis
ENSXMAG00000009545	cstf3	88	75.312	ENSXETG00000021399	cstf3	100	76.375	Xenopus_tropicalis
ENSXMAG00000009545	cstf3	87	99.518	ENSXCOG00000011741	cstf3	100	99.518	Xiphophorus_couchianus