EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000009606 (Gene tree)
Gene ID: 102217155
Gene Symbol: lsm6
Alias: zgc:92379
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 26895 bases
Position: chr5:4263745-4290639
Accession: 102217155
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000009626	LSM	PF01423.22	1.8e-18	1	1
ENSXMAP00000040922	LSM	PF01423.22	1.8e-15	1	1
ENSXMAP00000031896	LSM	PF01423.22	1.9e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000026163	-	423	-	ENSXMAP00000040922	80 (aa)	-	-
ENSXMAT00000042476	-	2709	-	ENSXMAP00000031896	77 (aa)	-	-
ENSXMAT00000009640	-	654	XM_005797582	ENSXMAP00000009626	80 (aa)	XP_005797639	M4A582

Gene Model

Click here to download ENSXMAG00000009606's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03018	RNA degradation	KEGG
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000009606's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000009606	lsm6	100	95.000	ENSG00000164167	LSM6	100	95.000	Homo_sapiens
ENSXMAG00000009606	lsm6	100	100.000	ENSAPOG00000019832	lsm6	100	100.000	Acanthochromis_polyacanthus
ENSXMAG00000009606	lsm6	100	95.000	ENSAMEG00000016671	LSM6	100	95.000	Ailuropoda_melanoleuca
ENSXMAG00000009606	lsm6	100	100.000	ENSACIG00000016711	lsm6	100	100.000	Amphilophus_citrinellus
ENSXMAG00000009606	lsm6	100	100.000	ENSAOCG00000002110	lsm6	52	100.000	Amphiprion_ocellaris
ENSXMAG00000009606	lsm6	100	100.000	ENSAPEG00000023992	lsm6	100	100.000	Amphiprion_percula
ENSXMAG00000009606	lsm6	100	100.000	ENSATEG00000012610	lsm6	100	100.000	Anabas_testudineus
ENSXMAG00000009606	lsm6	96	94.805	ENSAPLG00000012594	LSM6	99	94.805	Anas_platyrhynchos
ENSXMAG00000009606	lsm6	100	95.000	ENSACAG00000004004	LSM6	100	95.000	Anolis_carolinensis
ENSXMAG00000009606	lsm6	100	95.000	ENSANAG00000030568	-	100	95.000	Aotus_nancymaae
ENSXMAG00000009606	lsm6	100	82.500	ENSANAG00000021839	-	100	82.500	Aotus_nancymaae
ENSXMAG00000009606	lsm6	100	100.000	ENSACLG00000025621	lsm6	100	100.000	Astatotilapia_calliptera
ENSXMAG00000009606	lsm6	100	97.500	ENSAMXG00000038738	lsm6	100	97.500	Astyanax_mexicanus
ENSXMAG00000009606	lsm6	100	95.000	ENSBTAG00000014060	LSM6	100	95.000	Bos_taurus
ENSXMAG00000009606	lsm6	100	88.750	ENSBTAG00000052085	-	100	88.750	Bos_taurus
ENSXMAG00000009606	lsm6	94	78.667	WBGene00003080	lsm-6	97	78.667	Caenorhabditis_elegans
ENSXMAG00000009606	lsm6	100	95.000	ENSCJAG00000002482	LSM6	100	95.000	Callithrix_jacchus
ENSXMAG00000009606	lsm6	100	95.000	ENSCAFG00000007738	LSM6	100	95.000	Canis_familiaris
ENSXMAG00000009606	lsm6	100	95.000	ENSCAFG00020025902	LSM6	100	95.000	Canis_lupus_dingo
ENSXMAG00000009606	lsm6	100	95.000	ENSCHIG00000010334	-	100	95.000	Capra_hircus
ENSXMAG00000009606	lsm6	100	80.000	ENSCHIG00000024198	-	95	80.000	Capra_hircus
ENSXMAG00000009606	lsm6	90	97.101	ENSCHIG00000012864	-	100	97.183	Capra_hircus
ENSXMAG00000009606	lsm6	86	86.364	ENSTSYG00000012759	-	87	86.364	Carlito_syrichta
ENSXMAG00000009606	lsm6	100	95.000	ENSTSYG00000026972	LSM6	100	95.000	Carlito_syrichta
ENSXMAG00000009606	lsm6	84	93.846	ENSCAPG00000011179	-	100	93.846	Cavia_aperea
ENSXMAG00000009606	lsm6	100	95.000	ENSCAPG00000008104	LSM6	100	95.000	Cavia_aperea
ENSXMAG00000009606	lsm6	100	95.000	ENSCPOG00000032655	LSM6	100	95.000	Cavia_porcellus
ENSXMAG00000009606	lsm6	100	95.000	ENSCCAG00000036437	LSM6	100	95.000	Cebus_capucinus
ENSXMAG00000009606	lsm6	99	94.937	ENSCCAG00000020665	-	99	94.937	Cebus_capucinus
ENSXMAG00000009606	lsm6	100	95.000	ENSCATG00000002770	-	100	95.000	Cercocebus_atys
ENSXMAG00000009606	lsm6	100	72.500	ENSCATG00000038799	-	100	72.500	Cercocebus_atys
ENSXMAG00000009606	lsm6	100	95.000	ENSCLAG00000005495	LSM6	100	95.000	Chinchilla_lanigera
ENSXMAG00000009606	lsm6	90	76.812	ENSCLAG00000005685	-	100	77.465	Chinchilla_lanigera
ENSXMAG00000009606	lsm6	100	95.000	ENSCSAG00000003421	LSM6	100	95.000	Chlorocebus_sabaeus
ENSXMAG00000009606	lsm6	100	75.000	ENSCHOG00000003420	LSM6	84	98.113	Choloepus_hoffmanni
ENSXMAG00000009606	lsm6	100	95.000	ENSCPBG00000027472	LSM6	84	95.000	Chrysemys_picta_bellii
ENSXMAG00000009606	lsm6	95	94.737	ENSCING00000019152	-	93	94.737	Ciona_intestinalis
ENSXMAG00000009606	lsm6	95	96.053	ENSCSAVG00000002065	-	93	96.053	Ciona_savignyi
ENSXMAG00000009606	lsm6	100	95.000	ENSCANG00000006849	-	100	95.000	Colobus_angolensis_palliatus
ENSXMAG00000009606	lsm6	100	68.750	ENSCANG00000035214	-	100	68.750	Colobus_angolensis_palliatus
ENSXMAG00000009606	lsm6	100	95.000	ENSCANG00000041263	-	100	95.000	Colobus_angolensis_palliatus
ENSXMAG00000009606	lsm6	100	95.000	ENSCGRG00001017142	Lsm6	100	95.000	Cricetulus_griseus_chok1gshd
ENSXMAG00000009606	lsm6	100	95.000	ENSCGRG00000008320	Lsm6	100	95.000	Cricetulus_griseus_crigri
ENSXMAG00000009606	lsm6	100	100.000	ENSCSEG00000000423	lsm6	100	100.000	Cynoglossus_semilaevis
ENSXMAG00000009606	lsm6	100	100.000	ENSCVAG00000001592	lsm6	100	100.000	Cyprinodon_variegatus
ENSXMAG00000009606	lsm6	100	97.500	ENSDARG00000036995	lsm6	100	97.500	Danio_rerio
ENSXMAG00000009606	lsm6	96	93.243	ENSDNOG00000040186	-	80	93.243	Dasypus_novemcinctus
ENSXMAG00000009606	lsm6	100	93.750	ENSDNOG00000044848	-	100	93.750	Dasypus_novemcinctus
ENSXMAG00000009606	lsm6	100	95.000	ENSDORG00000000933	Lsm6	100	95.000	Dipodomys_ordii
ENSXMAG00000009606	lsm6	96	83.117	FBgn0034564	CG9344	97	83.117	Drosophila_melanogaster
ENSXMAG00000009606	lsm6	60	91.667	ENSETEG00000013098	LSM6	100	91.667	Echinops_telfairi
ENSXMAG00000009606	lsm6	100	96.250	ENSEBUG00000017073	lsm6	100	96.250	Eptatretus_burgeri
ENSXMAG00000009606	lsm6	99	89.474	ENSEASG00005001533	LSM6	72	97.101	Equus_asinus_asinus
ENSXMAG00000009606	lsm6	100	95.000	ENSECAG00000021036	LSM6	100	95.000	Equus_caballus
ENSXMAG00000009606	lsm6	99	67.089	ENSEEUG00000002101	LSM6	100	67.089	Erinaceus_europaeus
ENSXMAG00000009606	lsm6	100	97.500	ENSELUG00000014301	LSM6	100	97.500	Esox_lucius
ENSXMAG00000009606	lsm6	100	95.000	ENSFCAG00000003047	LSM6	100	95.000	Felis_catus
ENSXMAG00000009606	lsm6	100	95.000	ENSFALG00000005509	LSM6	92	95.000	Ficedula_albicollis
ENSXMAG00000009606	lsm6	100	85.000	ENSFDAG00000019073	-	100	85.000	Fukomys_damarensis
ENSXMAG00000009606	lsm6	100	95.000	ENSFDAG00000020913	-	100	95.000	Fukomys_damarensis
ENSXMAG00000009606	lsm6	100	100.000	ENSFHEG00000007948	lsm6	100	100.000	Fundulus_heteroclitus
ENSXMAG00000009606	lsm6	100	100.000	ENSGMOG00000015550	lsm6	100	100.000	Gadus_morhua
ENSXMAG00000009606	lsm6	100	95.000	ENSGALG00000009985	LSM6	100	95.000	Gallus_gallus
ENSXMAG00000009606	lsm6	100	100.000	ENSGAFG00000017763	lsm6	100	100.000	Gambusia_affinis
ENSXMAG00000009606	lsm6	100	98.750	ENSGACG00000017223	lsm6	100	98.750	Gasterosteus_aculeatus
ENSXMAG00000009606	lsm6	100	95.000	ENSGAGG00000020980	LSM6	100	95.000	Gopherus_agassizii
ENSXMAG00000009606	lsm6	100	95.000	ENSGGOG00000001310	LSM6	100	95.000	Gorilla_gorilla
ENSXMAG00000009606	lsm6	100	100.000	ENSHBUG00000008618	lsm6	100	100.000	Haplochromis_burtoni
ENSXMAG00000009606	lsm6	100	95.000	ENSHGLG00000000205	LSM6	100	95.000	Heterocephalus_glaber_female
ENSXMAG00000009606	lsm6	100	95.000	ENSHGLG00100014341	LSM6	100	95.000	Heterocephalus_glaber_male
ENSXMAG00000009606	lsm6	100	98.750	ENSHCOG00000005591	lsm6	100	98.750	Hippocampus_comes
ENSXMAG00000009606	lsm6	100	96.250	ENSIPUG00000004508	lsm6	100	96.250	Ictalurus_punctatus
ENSXMAG00000009606	lsm6	100	95.000	ENSSTOG00000002678	LSM6	100	95.000	Ictidomys_tridecemlineatus
ENSXMAG00000009606	lsm6	100	95.000	ENSJJAG00000013845	-	100	95.000	Jaculus_jaculus
ENSXMAG00000009606	lsm6	100	85.000	ENSJJAG00000011211	-	100	85.000	Jaculus_jaculus
ENSXMAG00000009606	lsm6	96	75.325	ENSJJAG00000016942	-	97	75.325	Jaculus_jaculus
ENSXMAG00000009606	lsm6	100	100.000	ENSKMAG00000004105	lsm6	100	100.000	Kryptolebias_marmoratus
ENSXMAG00000009606	lsm6	100	100.000	ENSLBEG00000018441	lsm6	100	100.000	Labrus_bergylta
ENSXMAG00000009606	lsm6	100	95.000	ENSLACG00000006937	LSM6	100	95.000	Latimeria_chalumnae
ENSXMAG00000009606	lsm6	100	96.250	ENSLOCG00000017683	-	100	96.250	Lepisosteus_oculatus
ENSXMAG00000009606	lsm6	100	97.500	ENSLOCG00000008852	lsm6	100	97.500	Lepisosteus_oculatus
ENSXMAG00000009606	lsm6	100	95.000	ENSLAFG00000001952	LSM6	100	95.000	Loxodonta_africana
ENSXMAG00000009606	lsm6	100	95.000	ENSMFAG00000033073	LSM6	100	95.000	Macaca_fascicularis
ENSXMAG00000009606	lsm6	100	73.750	ENSMNEG00000040412	-	100	73.750	Macaca_nemestrina
ENSXMAG00000009606	lsm6	100	95.000	ENSMNEG00000034820	-	100	95.000	Macaca_nemestrina
ENSXMAG00000009606	lsm6	100	95.000	ENSMLEG00000035153	LSM6	100	95.000	Mandrillus_leucophaeus
ENSXMAG00000009606	lsm6	100	100.000	ENSMAMG00000014029	lsm6	100	100.000	Mastacembelus_armatus
ENSXMAG00000009606	lsm6	100	100.000	ENSMZEG00005009146	lsm6	100	100.000	Maylandia_zebra
ENSXMAG00000009606	lsm6	100	95.000	ENSMGAG00000003802	LSM6	100	95.000	Meleagris_gallopavo
ENSXMAG00000009606	lsm6	100	95.000	ENSMAUG00000014938	Lsm6	100	95.000	Mesocricetus_auratus
ENSXMAG00000009606	lsm6	100	95.000	ENSMICG00000042599	LSM6	100	95.000	Microcebus_murinus
ENSXMAG00000009606	lsm6	98	88.462	ENSMICG00000047411	-	92	88.462	Microcebus_murinus
ENSXMAG00000009606	lsm6	100	95.000	ENSMOCG00000020049	Lsm6	100	95.000	Microtus_ochrogaster
ENSXMAG00000009606	lsm6	100	93.750	ENSMMOG00000007379	-	100	93.750	Mola_mola
ENSXMAG00000009606	lsm6	100	100.000	ENSMMOG00000005470	lsm6	100	100.000	Mola_mola
ENSXMAG00000009606	lsm6	100	95.000	ENSMODG00000000526	LSM6	100	95.000	Monodelphis_domestica
ENSXMAG00000009606	lsm6	100	100.000	ENSMALG00000002419	lsm6	100	100.000	Monopterus_albus
ENSXMAG00000009606	lsm6	100	95.000	MGP_CAROLIEiJ_G0031245	Lsm6	100	95.000	Mus_caroli
ENSXMAG00000009606	lsm6	100	95.000	ENSMUSG00000031683	Lsm6	100	95.000	Mus_musculus
ENSXMAG00000009606	lsm6	100	95.000	MGP_PahariEiJ_G0022851	Lsm6	100	95.000	Mus_pahari
ENSXMAG00000009606	lsm6	100	95.000	MGP_SPRETEiJ_G0032365	Lsm6	100	95.000	Mus_spretus
ENSXMAG00000009606	lsm6	99	96.203	ENSMPUG00000006936	LSM6	92	96.203	Mustela_putorius_furo
ENSXMAG00000009606	lsm6	100	95.000	ENSMLUG00000026355	LSM6	100	95.000	Myotis_lucifugus
ENSXMAG00000009606	lsm6	100	95.000	ENSNGAG00000019116	Lsm6	100	95.000	Nannospalax_galili
ENSXMAG00000009606	lsm6	100	100.000	ENSNBRG00000004887	lsm6	100	100.000	Neolamprologus_brichardi
ENSXMAG00000009606	lsm6	100	95.000	ENSNLEG00000005584	LSM6	100	95.000	Nomascus_leucogenys
ENSXMAG00000009606	lsm6	100	93.750	ENSOPRG00000011199	LSM6	100	93.750	Ochotona_princeps
ENSXMAG00000009606	lsm6	100	93.750	ENSODEG00000019419	-	100	93.750	Octodon_degus
ENSXMAG00000009606	lsm6	96	85.714	ENSODEG00000018684	-	100	85.714	Octodon_degus
ENSXMAG00000009606	lsm6	100	92.500	ENSODEG00000020420	-	100	92.500	Octodon_degus
ENSXMAG00000009606	lsm6	100	93.750	ENSODEG00000002307	-	100	93.750	Octodon_degus
ENSXMAG00000009606	lsm6	100	100.000	ENSONIG00000010005	lsm6	100	100.000	Oreochromis_niloticus
ENSXMAG00000009606	lsm6	98	69.231	ENSOANG00000006894	-	100	69.231	Ornithorhynchus_anatinus
ENSXMAG00000009606	lsm6	98	69.231	ENSOANG00000006895	-	100	69.231	Ornithorhynchus_anatinus
ENSXMAG00000009606	lsm6	100	98.750	ENSORLG00000024158	lsm6	100	98.750	Oryzias_latipes
ENSXMAG00000009606	lsm6	100	98.750	ENSORLG00020017383	lsm6	100	98.750	Oryzias_latipes_hni
ENSXMAG00000009606	lsm6	100	98.750	ENSORLG00015016903	lsm6	100	98.750	Oryzias_latipes_hsok
ENSXMAG00000009606	lsm6	100	100.000	ENSOMEG00000000074	lsm6	100	100.000	Oryzias_melastigma
ENSXMAG00000009606	lsm6	100	95.000	ENSOGAG00000033153	-	100	95.000	Otolemur_garnettii
ENSXMAG00000009606	lsm6	100	95.000	ENSOGAG00000026665	-	100	95.000	Otolemur_garnettii
ENSXMAG00000009606	lsm6	91	97.143	ENSOARG00000008509	-	90	97.143	Ovis_aries
ENSXMAG00000009606	lsm6	99	89.873	ENSOARG00000011641	-	92	89.873	Ovis_aries
ENSXMAG00000009606	lsm6	100	95.000	ENSPPAG00000037929	LSM6	100	95.000	Pan_paniscus
ENSXMAG00000009606	lsm6	100	95.000	ENSPPRG00000012806	LSM6	100	95.000	Panthera_pardus
ENSXMAG00000009606	lsm6	100	95.000	ENSPTIG00000019769	LSM6	100	95.000	Panthera_tigris_altaica
ENSXMAG00000009606	lsm6	100	95.000	ENSPTRG00000016488	LSM6	100	95.000	Pan_troglodytes
ENSXMAG00000009606	lsm6	100	95.000	ENSPANG00000006552	LSM6	100	95.000	Papio_anubis
ENSXMAG00000009606	lsm6	100	97.500	ENSPKIG00000016176	lsm6	100	97.500	Paramormyrops_kingsleyae
ENSXMAG00000009606	lsm6	100	95.000	ENSPSIG00000016942	LSM6	100	95.000	Pelodiscus_sinensis
ENSXMAG00000009606	lsm6	100	100.000	ENSPMGG00000018004	lsm6	100	100.000	Periophthalmus_magnuspinnatus
ENSXMAG00000009606	lsm6	100	95.000	ENSPEMG00000012410	Lsm6	100	95.000	Peromyscus_maniculatus_bairdii
ENSXMAG00000009606	lsm6	100	95.000	ENSPMAG00000006949	lsm6	100	95.000	Petromyzon_marinus
ENSXMAG00000009606	lsm6	100	95.000	ENSPCIG00000023469	LSM6	86	91.892	Phascolarctos_cinereus
ENSXMAG00000009606	lsm6	100	100.000	ENSPFOG00000008881	lsm6	100	100.000	Poecilia_formosa
ENSXMAG00000009606	lsm6	100	100.000	ENSPLAG00000003202	lsm6	100	100.000	Poecilia_latipinna
ENSXMAG00000009606	lsm6	100	100.000	ENSPMEG00000004000	lsm6	100	100.000	Poecilia_mexicana
ENSXMAG00000009606	lsm6	100	100.000	ENSPREG00000023235	lsm6	100	100.000	Poecilia_reticulata
ENSXMAG00000009606	lsm6	100	95.000	ENSPPYG00000015105	LSM6	100	95.000	Pongo_abelii
ENSXMAG00000009606	lsm6	100	95.000	ENSPCOG00000013899	LSM6	100	95.000	Propithecus_coquereli
ENSXMAG00000009606	lsm6	100	100.000	ENSPNYG00000012614	lsm6	100	100.000	Pundamilia_nyererei
ENSXMAG00000009606	lsm6	100	97.500	ENSPNAG00000018779	lsm6	100	97.500	Pygocentrus_nattereri
ENSXMAG00000009606	lsm6	100	95.000	ENSRNOG00000049370	LOC100360750	100	95.000	Rattus_norvegicus
ENSXMAG00000009606	lsm6	100	95.000	ENSRNOG00000030374	Lsm6	100	95.000	Rattus_norvegicus
ENSXMAG00000009606	lsm6	100	95.000	ENSRBIG00000027878	LSM6	100	95.000	Rhinopithecus_bieti
ENSXMAG00000009606	lsm6	100	95.000	ENSRROG00000024868	LSM6	100	95.000	Rhinopithecus_roxellana
ENSXMAG00000009606	lsm6	95	41.250	YDR378C	-	93	45.000	Saccharomyces_cerevisiae
ENSXMAG00000009606	lsm6	100	95.000	ENSSBOG00000021229	-	100	95.000	Saimiri_boliviensis_boliviensis
ENSXMAG00000009606	lsm6	100	68.750	ENSSBOG00000028103	-	100	68.750	Saimiri_boliviensis_boliviensis
ENSXMAG00000009606	lsm6	100	97.500	ENSSFOG00015016480	lsm6	100	97.500	Scleropages_formosus
ENSXMAG00000009606	lsm6	100	100.000	ENSSMAG00000004550	lsm6	100	100.000	Scophthalmus_maximus
ENSXMAG00000009606	lsm6	100	100.000	ENSSDUG00000020459	lsm6	50	100.000	Seriola_dumerili
ENSXMAG00000009606	lsm6	99	94.805	ENSSLDG00000004136	-	66	94.805	Seriola_lalandi_dorsalis
ENSXMAG00000009606	lsm6	100	100.000	ENSSLDG00000020533	lsm6	83	100.000	Seriola_lalandi_dorsalis
ENSXMAG00000009606	lsm6	60	91.667	ENSSARG00000000689	LSM6	100	91.667	Sorex_araneus
ENSXMAG00000009606	lsm6	100	95.000	ENSSPUG00000008657	LSM6	100	95.000	Sphenodon_punctatus
ENSXMAG00000009606	lsm6	100	100.000	ENSSPAG00000003246	lsm6	100	100.000	Stegastes_partitus
ENSXMAG00000009606	lsm6	100	95.000	ENSSSCG00000035973	LSM6	100	95.000	Sus_scrofa
ENSXMAG00000009606	lsm6	100	95.000	ENSTGUG00000002663	LSM6	100	95.000	Taeniopygia_guttata
ENSXMAG00000009606	lsm6	100	100.000	ENSTRUG00000023398	lsm6	100	100.000	Takifugu_rubripes
ENSXMAG00000009606	lsm6	100	100.000	ENSTNIG00000017725	lsm6	100	100.000	Tetraodon_nigroviridis
ENSXMAG00000009606	lsm6	100	95.000	ENSTTRG00000004609	LSM6	100	95.000	Tursiops_truncatus
ENSXMAG00000009606	lsm6	91	97.143	ENSUAMG00000014213	LSM6	57	97.143	Ursus_americanus
ENSXMAG00000009606	lsm6	91	97.143	ENSUMAG00000015727	LSM6	57	97.143	Ursus_maritimus
ENSXMAG00000009606	lsm6	100	95.000	ENSVPAG00000006922	LSM6	100	95.000	Vicugna_pacos
ENSXMAG00000009606	lsm6	100	95.000	ENSVVUG00000009254	LSM6	68	95.000	Vulpes_vulpes
ENSXMAG00000009606	lsm6	100	95.000	ENSXETG00000023683	lsm6	100	95.000	Xenopus_tropicalis