EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000009678 (Gene tree)
Gene ID: 102218085
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 11529 bases
Position: chr5:3863196-3874724
Accession: 102218085
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000009735	ResIII	PF04851.15	6.6e-11	1	1
ENSXMAP00000020526	ResIII	PF04851.15	6.6e-11	1	1
ENSXMAP00000020526	DEAD	PF00270.29	1.9e-06	1	1
ENSXMAP00000009735	DEAD	PF00270.29	2.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000023933	-	4460	-	ENSXMAP00000020526	935 (aa)	-	-
ENSXMAT00000009749	-	4195	XM_005797586	ENSXMAP00000009735	1035 (aa)	XP_005797643	M4A5J1

Gene Model

Click here to download ENSXMAG00000009678's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000009678's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000009678	smarca5	97	84.978	ENSG00000102038	SMARCA1	93	83.401	Homo_sapiens
ENSXMAG00000009678	smarca5	100	97.201	ENSAPOG00000016035	smarca5	100	97.201	Acanthochromis_polyacanthus
ENSXMAG00000009678	smarca5	97	83.983	ENSAMEG00000015218	SMARCA1	93	82.495	Ailuropoda_melanoleuca
ENSXMAG00000009678	smarca5	94	97.735	ENSACIG00000016982	smarca5	100	98.002	Amphilophus_citrinellus
ENSXMAG00000009678	smarca5	100	97.201	ENSAOCG00000015578	smarca5	100	97.201	Amphiprion_ocellaris
ENSXMAG00000009678	smarca5	100	97.201	ENSAPEG00000011117	smarca5	100	97.201	Amphiprion_percula
ENSXMAG00000009678	smarca5	100	97.101	ENSATEG00000012894	smarca5	100	97.101	Anabas_testudineus
ENSXMAG00000009678	smarca5	98	85.016	ENSAPLG00000013149	SMARCA1	99	84.012	Anas_platyrhynchos
ENSXMAG00000009678	smarca5	98	85.777	ENSACAG00000011376	SMARCA1	94	84.623	Anolis_carolinensis
ENSXMAG00000009678	smarca5	97	79.934	ENSANAG00000023098	SMARCA1	93	78.717	Aotus_nancymaae
ENSXMAG00000009678	smarca5	100	97.104	ENSACLG00000025356	smarca5	100	97.104	Astatotilapia_calliptera
ENSXMAG00000009678	smarca5	98	94.651	ENSAMXG00000005709	smarca5	100	90.743	Astyanax_mexicanus
ENSXMAG00000009678	smarca5	98	84.825	ENSAMXG00000011227	smarca1	99	85.525	Astyanax_mexicanus
ENSXMAG00000009678	smarca5	97	84.759	ENSBTAG00000002292	SMARCA1	91	83.351	Bos_taurus
ENSXMAG00000009678	smarca5	98	66.091	WBGene00002169	isw-1	95	63.880	Caenorhabditis_elegans
ENSXMAG00000009678	smarca5	97	84.978	ENSCJAG00000002868	SMARCA1	93	83.401	Callithrix_jacchus
ENSXMAG00000009678	smarca5	97	74.919	ENSCAFG00000018673	SMARCA1	99	75.293	Canis_familiaris
ENSXMAG00000009678	smarca5	97	85.088	ENSCAFG00020001751	SMARCA1	93	83.503	Canis_lupus_dingo
ENSXMAG00000009678	smarca5	97	84.649	ENSCHIG00000009837	SMARCA1	92	83.096	Capra_hircus
ENSXMAG00000009678	smarca5	98	84.858	ENSTSYG00000004240	SMARCA1	94	84.372	Carlito_syrichta
ENSXMAG00000009678	smarca5	97	83.991	ENSCPOG00000013601	SMARCA1	93	81.883	Cavia_porcellus
ENSXMAG00000009678	smarca5	97	82.127	ENSCCAG00000030817	SMARCA1	93	80.652	Cebus_capucinus
ENSXMAG00000009678	smarca5	98	84.641	ENSCATG00000015921	SMARCA1	93	82.394	Cercocebus_atys
ENSXMAG00000009678	smarca5	97	84.211	ENSCLAG00000002171	SMARCA1	93	82.587	Chinchilla_lanigera
ENSXMAG00000009678	smarca5	97	84.978	ENSCSAG00000008460	SMARCA1	93	83.401	Chlorocebus_sabaeus
ENSXMAG00000009678	smarca5	97	85.840	ENSCPBG00000001146	SMARCA1	93	84.318	Chrysemys_picta_bellii
ENSXMAG00000009678	smarca5	96	77.187	ENSCING00000004110	swi/snf	99	73.518	Ciona_intestinalis
ENSXMAG00000009678	smarca5	97	76.342	ENSCSAVG00000004620	-	99	75.727	Ciona_savignyi
ENSXMAG00000009678	smarca5	97	85.088	ENSCANG00000007183	SMARCA1	93	83.503	Colobus_angolensis_palliatus
ENSXMAG00000009678	smarca5	97	83.882	ENSCGRG00001010776	Smarca1	93	82.383	Cricetulus_griseus_chok1gshd
ENSXMAG00000009678	smarca5	98	83.333	ENSCGRG00000015301	Smarca1	97	81.481	Cricetulus_griseus_crigri
ENSXMAG00000009678	smarca5	100	96.425	ENSCSEG00000000328	smarca5	100	96.425	Cynoglossus_semilaevis
ENSXMAG00000009678	smarca5	100	98.841	ENSCVAG00000008668	smarca5	100	98.841	Cyprinodon_variegatus
ENSXMAG00000009678	smarca5	98	83.191	ENSDARG00000012776	smarca1	99	80.583	Danio_rerio
ENSXMAG00000009678	smarca5	98	94.105	ENSDARG00000052348	smarca5	100	90.347	Danio_rerio
ENSXMAG00000009678	smarca5	98	84.262	ENSDNOG00000004315	SMARCA1	91	84.305	Dasypus_novemcinctus
ENSXMAG00000009678	smarca5	98	84.205	ENSDORG00000009270	Smarca1	90	84.305	Dipodomys_ordii
ENSXMAG00000009678	smarca5	95	78.198	FBgn0011604	Iswi	99	71.965	Drosophila_melanogaster
ENSXMAG00000009678	smarca5	81	79.464	ENSETEG00000017426	SMARCA1	83	81.818	Echinops_telfairi
ENSXMAG00000009678	smarca5	97	83.644	ENSEBUG00000001239	smarca5	99	80.536	Eptatretus_burgeri
ENSXMAG00000009678	smarca5	97	81.167	ENSEASG00005008218	SMARCA1	99	79.453	Equus_asinus_asinus
ENSXMAG00000009678	smarca5	97	84.978	ENSECAG00000012106	SMARCA1	92	83.401	Equus_caballus
ENSXMAG00000009678	smarca5	82	85.768	ENSEEUG00000014927	SMARCA1	80	84.106	Erinaceus_europaeus
ENSXMAG00000009678	smarca5	97	85.449	ENSELUG00000010515	smarca1	96	84.168	Esox_lucius
ENSXMAG00000009678	smarca5	97	84.978	ENSFCAG00000018496	SMARCA1	93	83.401	Felis_catus
ENSXMAG00000009678	smarca5	94	85.194	ENSFALG00000000209	SMARCA1	98	85.011	Ficedula_albicollis
ENSXMAG00000009678	smarca5	98	83.011	ENSFDAG00000009818	SMARCA1	94	82.932	Fukomys_damarensis
ENSXMAG00000009678	smarca5	100	97.419	ENSFHEG00000007687	smarca5	100	97.419	Fundulus_heteroclitus
ENSXMAG00000009678	smarca5	98	85.246	ENSGALG00000008431	SMARCA1	95	84.807	Gallus_gallus
ENSXMAG00000009678	smarca5	100	99.710	ENSGAFG00000017731	smarca5	100	99.710	Gambusia_affinis
ENSXMAG00000009678	smarca5	97	85.840	ENSGAGG00000023575	SMARCA1	99	84.465	Gopherus_agassizii
ENSXMAG00000009678	smarca5	70	96.000	ENSGGOG00000012841	-	92	79.562	Gorilla_gorilla
ENSXMAG00000009678	smarca5	97	84.211	ENSHGLG00000003080	SMARCA1	93	82.485	Heterocephalus_glaber_female
ENSXMAG00000009678	smarca5	97	84.211	ENSHGLG00100001102	SMARCA1	99	81.984	Heterocephalus_glaber_male
ENSXMAG00000009678	smarca5	100	96.236	ENSHCOG00000005458	smarca5	100	96.236	Hippocampus_comes
ENSXMAG00000009678	smarca5	98	85.153	ENSIPUG00000016905	Smarca1	99	84.114	Ictalurus_punctatus
ENSXMAG00000009678	smarca5	98	94.323	ENSIPUG00000005229	SMARCA5	99	92.223	Ictalurus_punctatus
ENSXMAG00000009678	smarca5	97	84.868	ENSSTOG00000014524	SMARCA1	97	81.493	Ictidomys_tridecemlineatus
ENSXMAG00000009678	smarca5	98	83.660	ENSJJAG00000002593	Smarca1	93	81.966	Jaculus_jaculus
ENSXMAG00000009678	smarca5	100	98.068	ENSKMAG00000003777	smarca5	100	98.068	Kryptolebias_marmoratus
ENSXMAG00000009678	smarca5	94	97.032	ENSLBEG00000013295	SMARCA1	100	97.468	Labrus_bergylta
ENSXMAG00000009678	smarca5	100	96.039	ENSLBEG00000018112	smarca5	100	96.039	Labrus_bergylta
ENSXMAG00000009678	smarca5	98	85.932	ENSLACG00000016697	SMARCA1	95	85.361	Latimeria_chalumnae
ENSXMAG00000009678	smarca5	98	86.150	ENSLOCG00000014591	smarca1	95	85.773	Lepisosteus_oculatus
ENSXMAG00000009678	smarca5	98	83.261	ENSLAFG00000000896	SMARCA1	98	82.186	Loxodonta_africana
ENSXMAG00000009678	smarca5	98	84.641	ENSMFAG00000002117	SMARCA1	94	84.444	Macaca_fascicularis
ENSXMAG00000009678	smarca5	98	84.641	ENSMMUG00000008818	SMARCA1	97	84.558	Macaca_mulatta
ENSXMAG00000009678	smarca5	98	84.641	ENSMNEG00000041768	SMARCA1	94	84.444	Macaca_nemestrina
ENSXMAG00000009678	smarca5	97	84.978	ENSMLEG00000043198	SMARCA1	93	83.401	Mandrillus_leucophaeus
ENSXMAG00000009678	smarca5	100	96.824	ENSMAMG00000014294	smarca5	100	96.824	Mastacembelus_armatus
ENSXMAG00000009678	smarca5	100	97.104	ENSMZEG00005009369	smarca5	100	97.104	Maylandia_zebra
ENSXMAG00000009678	smarca5	98	83.923	ENSMGAG00000007042	SMARCA1	98	82.998	Meleagris_gallopavo
ENSXMAG00000009678	smarca5	98	83.224	ENSMAUG00000008133	Smarca1	91	82.199	Mesocricetus_auratus
ENSXMAG00000009678	smarca5	97	85.307	ENSMICG00000015768	SMARCA1	93	83.707	Microcebus_murinus
ENSXMAG00000009678	smarca5	97	83.443	ENSMOCG00000009464	Smarca1	93	81.560	Microtus_ochrogaster
ENSXMAG00000009678	smarca5	98	95.742	ENSMMOG00000005547	smarca5	100	95.871	Mola_mola
ENSXMAG00000009678	smarca5	97	85.417	ENSMODG00000013187	-	94	83.996	Monodelphis_domestica
ENSXMAG00000009678	smarca5	100	96.625	ENSMALG00000002081	smarca5	100	96.625	Monopterus_albus
ENSXMAG00000009678	smarca5	98	83.442	MGP_CAROLIEiJ_G0033034	Smarca1	93	81.864	Mus_caroli
ENSXMAG00000009678	smarca5	98	83.442	ENSMUSG00000031099	Smarca1	93	81.966	Mus_musculus
ENSXMAG00000009678	smarca5	98	83.551	MGP_PahariEiJ_G0031579	Smarca1	92	82.245	Mus_pahari
ENSXMAG00000009678	smarca5	98	83.442	MGP_SPRETEiJ_G0034192	Smarca1	93	81.966	Mus_spretus
ENSXMAG00000009678	smarca5	97	83.983	ENSMPUG00000017423	SMARCA1	88	82.495	Mustela_putorius_furo
ENSXMAG00000009678	smarca5	97	82.613	ENSMLUG00000029614	SMARCA1	93	80.924	Myotis_lucifugus
ENSXMAG00000009678	smarca5	98	83.769	ENSNGAG00000006492	Smarca1	91	82.723	Nannospalax_galili
ENSXMAG00000009678	smarca5	98	97.707	ENSNBRG00000004463	smarca5	100	97.789	Neolamprologus_brichardi
ENSXMAG00000009678	smarca5	98	83.878	ENSNLEG00000015179	SMARCA1	94	83.721	Nomascus_leucogenys
ENSXMAG00000009678	smarca5	94	76.153	ENSMEUG00000008819	SMARCA1	98	76.257	Notamacropus_eugenii
ENSXMAG00000009678	smarca5	98	82.796	ENSODEG00000012163	SMARCA1	91	82.723	Octodon_degus
ENSXMAG00000009678	smarca5	100	97.201	ENSONIG00000009993	smarca5	100	97.201	Oreochromis_niloticus
ENSXMAG00000009678	smarca5	97	86.075	ENSOANG00000002862	SMARCA1	99	84.877	Ornithorhynchus_anatinus
ENSXMAG00000009678	smarca5	97	84.868	ENSOCUG00000001047	SMARCA1	93	83.401	Oryctolagus_cuniculus
ENSXMAG00000009678	smarca5	100	96.439	ENSORLG00000021998	smarca5	100	96.439	Oryzias_latipes
ENSXMAG00000009678	smarca5	100	96.435	ENSORLG00020017679	smarca5	100	96.435	Oryzias_latipes_hni
ENSXMAG00000009678	smarca5	100	96.625	ENSORLG00015017210	smarca5	100	96.625	Oryzias_latipes_hsok
ENSXMAG00000009678	smarca5	100	96.718	ENSOMEG00000000086	smarca5	100	96.718	Oryzias_melastigma
ENSXMAG00000009678	smarca5	98	83.763	ENSOGAG00000004399	SMARCA1	91	83.770	Otolemur_garnettii
ENSXMAG00000009678	smarca5	97	84.649	ENSOARG00000014638	SMARCA1	99	83.231	Ovis_aries
ENSXMAG00000009678	smarca5	97	84.978	ENSPPAG00000034647	SMARCA1	93	83.401	Pan_paniscus
ENSXMAG00000009678	smarca5	97	85.088	ENSPPRG00000008929	SMARCA1	93	83.503	Panthera_pardus
ENSXMAG00000009678	smarca5	97	82.992	ENSPTIG00000000915	SMARCA1	96	81.582	Panthera_tigris_altaica
ENSXMAG00000009678	smarca5	98	84.641	ENSPTRG00000049876	SMARCA1	93	82.394	Pan_troglodytes
ENSXMAG00000009678	smarca5	97	84.978	ENSPANG00000003871	SMARCA1	93	83.401	Papio_anubis
ENSXMAG00000009678	smarca5	98	84.314	ENSPKIG00000013411	smarca1	99	82.096	Paramormyrops_kingsleyae
ENSXMAG00000009678	smarca5	97	85.840	ENSPSIG00000010101	SMARCA1	99	84.465	Pelodiscus_sinensis
ENSXMAG00000009678	smarca5	98	83.551	ENSPEMG00000017503	Smarca1	91	82.513	Peromyscus_maniculatus_bairdii
ENSXMAG00000009678	smarca5	99	85.173	ENSPCIG00000015460	SMARCA1	96	84.420	Phascolarctos_cinereus
ENSXMAG00000009678	smarca5	100	99.614	ENSPFOG00000007649	smarca5	100	99.614	Poecilia_formosa
ENSXMAG00000009678	smarca5	100	99.614	ENSPLAG00000003363	smarca5	100	99.614	Poecilia_latipinna
ENSXMAG00000009678	smarca5	100	99.710	ENSPMEG00000019849	smarca5	100	99.710	Poecilia_mexicana
ENSXMAG00000009678	smarca5	100	99.614	ENSPREG00000023250	smarca5	100	99.614	Poecilia_reticulata
ENSXMAG00000009678	smarca5	97	81.908	ENSPPYG00000020703	SMARCA1	93	80.550	Pongo_abelii
ENSXMAG00000009678	smarca5	80	76.331	ENSPCOG00000020722	SMARCA1	93	79.970	Propithecus_coquereli
ENSXMAG00000009678	smarca5	92	82.737	ENSPVAG00000003805	SMARCA1	85	83.311	Pteropus_vampyrus
ENSXMAG00000009678	smarca5	58	99.687	ENSPNYG00000012299	smarca5	93	98.947	Pundamilia_nyererei
ENSXMAG00000009678	smarca5	97	83.553	ENSRNOG00000003762	Smarca1	93	82.077	Rattus_norvegicus
ENSXMAG00000009678	smarca5	97	85.088	ENSRROG00000034167	SMARCA1	93	83.503	Rhinopithecus_roxellana
ENSXMAG00000009678	smarca5	97	84.978	ENSSBOG00000020641	SMARCA1	99	83.436	Saimiri_boliviensis_boliviensis
ENSXMAG00000009678	smarca5	98	81.291	ENSSHAG00000013518	SMARCA1	99	79.733	Sarcophilus_harrisii
ENSXMAG00000009678	smarca5	98	93.122	ENSSFOG00015016794	smarca5	100	93.093	Scleropages_formosus
ENSXMAG00000009678	smarca5	98	85.854	ENSSFOG00015009043	smarca1	96	84.827	Scleropages_formosus
ENSXMAG00000009678	smarca5	100	95.950	ENSSMAG00000004801	smarca5	100	95.950	Scophthalmus_maximus
ENSXMAG00000009678	smarca5	100	96.812	ENSSDUG00000020690	smarca5	100	96.812	Seriola_dumerili
ENSXMAG00000009678	smarca5	100	96.812	ENSSLDG00000025190	smarca5	100	96.812	Seriola_lalandi_dorsalis
ENSXMAG00000009678	smarca5	87	84.698	ENSSARG00000000842	SMARCA1	81	84.698	Sorex_araneus
ENSXMAG00000009678	smarca5	99	83.726	ENSSPUG00000000590	SMARCA1	96	82.648	Sphenodon_punctatus
ENSXMAG00000009678	smarca5	100	97.104	ENSSPAG00000002894	smarca5	100	97.104	Stegastes_partitus
ENSXMAG00000009678	smarca5	98	84.481	ENSSSCG00000012649	SMARCA1	97	81.836	Sus_scrofa
ENSXMAG00000009678	smarca5	98	84.691	ENSTGUG00000003899	-	99	83.707	Taeniopygia_guttata
ENSXMAG00000009678	smarca5	100	95.556	ENSTRUG00000014094	smarca5	100	95.556	Takifugu_rubripes
ENSXMAG00000009678	smarca5	98	95.087	ENSTNIG00000017717	smarca5	97	95.050	Tetraodon_nigroviridis
ENSXMAG00000009678	smarca5	96	81.938	ENSTBEG00000014973	SMARCA1	89	82.413	Tupaia_belangeri
ENSXMAG00000009678	smarca5	98	80.108	ENSTTRG00000006168	SMARCA1	96	80.231	Tursiops_truncatus
ENSXMAG00000009678	smarca5	97	84.868	ENSUAMG00000020201	SMARCA1	93	83.299	Ursus_americanus
ENSXMAG00000009678	smarca5	98	80.916	ENSUMAG00000004073	SMARCA1	96	85.086	Ursus_maritimus
ENSXMAG00000009678	smarca5	78	86.280	ENSVPAG00000010492	-	77	87.543	Vicugna_pacos
ENSXMAG00000009678	smarca5	98	84.809	ENSVVUG00000008878	SMARCA1	98	84.878	Vulpes_vulpes
ENSXMAG00000009678	smarca5	98	84.816	ENSXETG00000001526	smarca1	98	84.254	Xenopus_tropicalis
ENSXMAG00000009678	smarca5	98	99.672	ENSXCOG00000011170	smarca5	100	100.000	Xiphophorus_couchianus