EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000009783 (Gene tree)
Gene ID: 102216608
Gene Symbol: clp1
Alias: fa28a12|wu:fa28a12
Full Name: cleavage and polyadenylation factor I subunit 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 3585 bases
Position: chr23:15714396-15717980
Accession: 102216608
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000009805	Clp1	PF06807.14	8.5e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000009819	-	1949	XM_005809812	ENSXMAP00000009805	441 (aa)	XP_005809869	M4A5R1

Gene Model

Click here to download ENSXMAG00000009783's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000009783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000009783	clp1	99	75.172	ENSG00000172409	CLP1	99	75.638	Homo_sapiens
ENSXMAG00000009783	clp1	100	94.331	ENSAPOG00000008242	clp1	100	94.331	Acanthochromis_polyacanthus
ENSXMAG00000009783	clp1	99	74.943	ENSAMEG00000014551	CLP1	99	74.943	Ailuropoda_melanoleuca
ENSXMAG00000009783	clp1	100	93.878	ENSACIG00000006310	clp1	99	93.878	Amphilophus_citrinellus
ENSXMAG00000009783	clp1	100	94.558	ENSAOCG00000010681	clp1	100	94.558	Amphiprion_ocellaris
ENSXMAG00000009783	clp1	100	94.558	ENSAPEG00000012165	clp1	100	94.558	Amphiprion_percula
ENSXMAG00000009783	clp1	100	94.785	ENSATEG00000012374	clp1	100	94.785	Anabas_testudineus
ENSXMAG00000009783	clp1	98	75.463	ENSACAG00000007139	CLP1	99	75.463	Anolis_carolinensis
ENSXMAG00000009783	clp1	99	75.172	ENSANAG00000034935	CLP1	99	75.638	Aotus_nancymaae
ENSXMAG00000009783	clp1	100	94.104	ENSACLG00000013573	clp1	100	94.104	Astatotilapia_calliptera
ENSXMAG00000009783	clp1	95	87.500	ENSAMXG00000014194	clp1	98	87.500	Astyanax_mexicanus
ENSXMAG00000009783	clp1	98	75.174	ENSBTAG00000006493	CLP1	99	75.174	Bos_taurus
ENSXMAG00000009783	clp1	95	47.281	WBGene00010304	clpf-1	97	47.281	Caenorhabditis_elegans
ENSXMAG00000009783	clp1	99	75.172	ENSCJAG00000008748	CLP1	99	75.638	Callithrix_jacchus
ENSXMAG00000009783	clp1	98	75.174	ENSCAFG00000007815	CLP1	99	75.174	Canis_familiaris
ENSXMAG00000009783	clp1	98	75.174	ENSCAFG00020000903	CLP1	99	75.174	Canis_lupus_dingo
ENSXMAG00000009783	clp1	98	75.870	ENSCHIG00000023497	CLP1	99	75.870	Capra_hircus
ENSXMAG00000009783	clp1	99	75.172	ENSTSYG00000006824	CLP1	99	75.172	Carlito_syrichta
ENSXMAG00000009783	clp1	98	75.463	ENSCAPG00000009703	CLP1	99	75.463	Cavia_aperea
ENSXMAG00000009783	clp1	96	76.179	ENSCPOG00000012554	CLP1	99	76.179	Cavia_porcellus
ENSXMAG00000009783	clp1	98	75.174	ENSCCAG00000031957	CLP1	99	75.174	Cebus_capucinus
ENSXMAG00000009783	clp1	100	74.150	ENSCATG00000044628	CLP1	99	75.638	Cercocebus_atys
ENSXMAG00000009783	clp1	98	75.406	ENSCLAG00000004094	CLP1	99	75.406	Chinchilla_lanigera
ENSXMAG00000009783	clp1	98	75.638	ENSCSAG00000005994	CLP1	99	75.638	Chlorocebus_sabaeus
ENSXMAG00000009783	clp1	98	75.000	ENSCPBG00000016843	CLP1	99	75.000	Chrysemys_picta_bellii
ENSXMAG00000009783	clp1	96	61.229	ENSCING00000003779	-	97	61.229	Ciona_intestinalis
ENSXMAG00000009783	clp1	98	60.557	ENSCSAVG00000003437	-	99	60.557	Ciona_savignyi
ENSXMAG00000009783	clp1	99	75.172	ENSCANG00000034335	CLP1	99	75.638	Colobus_angolensis_palliatus
ENSXMAG00000009783	clp1	98	74.769	ENSCGRG00001002227	CLP1	99	74.769	Cricetulus_griseus_chok1gshd
ENSXMAG00000009783	clp1	98	74.769	ENSCGRG00000004328	CLP1	99	74.769	Cricetulus_griseus_crigri
ENSXMAG00000009783	clp1	100	90.930	ENSCSEG00000008614	clp1	100	90.930	Cynoglossus_semilaevis
ENSXMAG00000009783	clp1	100	97.279	ENSCVAG00000020101	clp1	100	97.279	Cyprinodon_variegatus
ENSXMAG00000009783	clp1	100	84.978	ENSDARG00000063663	clp1	100	84.978	Danio_rerio
ENSXMAG00000009783	clp1	98	74.827	ENSDNOG00000042415	CLP1	90	74.827	Dasypus_novemcinctus
ENSXMAG00000009783	clp1	98	74.942	ENSDORG00000014685	Clp1	99	74.942	Dipodomys_ordii
ENSXMAG00000009783	clp1	95	53.589	FBgn0033842	cbc	97	53.589	Drosophila_melanogaster
ENSXMAG00000009783	clp1	98	75.406	ENSETEG00000003009	CLP1	99	75.406	Echinops_telfairi
ENSXMAG00000009783	clp1	98	64.501	ENSEBUG00000011648	clp1	99	64.501	Eptatretus_burgeri
ENSXMAG00000009783	clp1	98	75.870	ENSEASG00005002093	CLP1	99	75.870	Equus_asinus_asinus
ENSXMAG00000009783	clp1	99	75.632	ENSECAG00000011597	CLP1	99	75.870	Equus_caballus
ENSXMAG00000009783	clp1	98	74.710	ENSEEUG00000012771	CLP1	99	74.710	Erinaceus_europaeus
ENSXMAG00000009783	clp1	100	86.099	ENSELUG00000024048	clp1	100	86.099	Esox_lucius
ENSXMAG00000009783	clp1	99	75.172	ENSFCAG00000006633	CLP1	99	75.406	Felis_catus
ENSXMAG00000009783	clp1	98	75.463	ENSFALG00000011145	CLP1	99	75.463	Ficedula_albicollis
ENSXMAG00000009783	clp1	98	75.406	ENSFDAG00000000234	CLP1	99	75.406	Fukomys_damarensis
ENSXMAG00000009783	clp1	100	98.186	ENSFHEG00000014760	CLP1	100	98.186	Fundulus_heteroclitus
ENSXMAG00000009783	clp1	100	87.982	ENSGMOG00000019340	clp1	100	87.982	Gadus_morhua
ENSXMAG00000009783	clp1	98	75.694	ENSGALG00000007370	CLP1	99	75.694	Gallus_gallus
ENSXMAG00000009783	clp1	100	99.773	ENSGAFG00000003020	clp1	100	99.773	Gambusia_affinis
ENSXMAG00000009783	clp1	100	93.424	ENSGACG00000017832	clp1	100	93.424	Gasterosteus_aculeatus
ENSXMAG00000009783	clp1	98	75.000	ENSGAGG00000013279	CLP1	99	75.000	Gopherus_agassizii
ENSXMAG00000009783	clp1	99	75.172	ENSGGOG00000023006	CLP1	99	75.638	Gorilla_gorilla
ENSXMAG00000009783	clp1	100	94.331	ENSHBUG00000010436	clp1	100	94.331	Haplochromis_burtoni
ENSXMAG00000009783	clp1	98	75.406	ENSHGLG00000009914	CLP1	99	75.406	Heterocephalus_glaber_female
ENSXMAG00000009783	clp1	98	75.406	ENSHGLG00100006105	CLP1	99	75.406	Heterocephalus_glaber_male
ENSXMAG00000009783	clp1	100	93.651	ENSHCOG00000010072	clp1	100	93.651	Hippocampus_comes
ENSXMAG00000009783	clp1	95	87.707	ENSIPUG00000016238	clp1	99	84.187	Ictalurus_punctatus
ENSXMAG00000009783	clp1	98	75.406	ENSSTOG00000029257	CLP1	99	75.406	Ictidomys_tridecemlineatus
ENSXMAG00000009783	clp1	98	74.942	ENSJJAG00000023691	Clp1	99	74.942	Jaculus_jaculus
ENSXMAG00000009783	clp1	100	96.145	ENSKMAG00000011990	clp1	100	96.145	Kryptolebias_marmoratus
ENSXMAG00000009783	clp1	100	94.331	ENSLBEG00000010201	clp1	100	94.331	Labrus_bergylta
ENSXMAG00000009783	clp1	98	74.884	ENSLACG00000003160	CLP1	99	74.884	Latimeria_chalumnae
ENSXMAG00000009783	clp1	71	86.025	ENSLOCG00000008074	clp1	100	86.025	Lepisosteus_oculatus
ENSXMAG00000009783	clp1	98	75.174	ENSLAFG00000014907	CLP1	99	75.174	Loxodonta_africana
ENSXMAG00000009783	clp1	99	75.172	ENSMFAG00000046074	CLP1	99	75.638	Macaca_fascicularis
ENSXMAG00000009783	clp1	99	75.172	ENSMMUG00000038007	CLP1	99	75.172	Macaca_mulatta
ENSXMAG00000009783	clp1	98	75.638	ENSMNEG00000000259	CLP1	99	75.638	Macaca_nemestrina
ENSXMAG00000009783	clp1	99	75.172	ENSMLEG00000043556	CLP1	99	75.638	Mandrillus_leucophaeus
ENSXMAG00000009783	clp1	100	95.692	ENSMAMG00000002149	clp1	100	95.692	Mastacembelus_armatus
ENSXMAG00000009783	clp1	100	94.104	ENSMZEG00005002850	clp1	100	94.104	Maylandia_zebra
ENSXMAG00000009783	clp1	98	75.694	ENSMGAG00000009643	CLP1	99	75.694	Meleagris_gallopavo
ENSXMAG00000009783	clp1	98	74.306	ENSMAUG00000016261	Clp1	99	74.306	Mesocricetus_auratus
ENSXMAG00000009783	clp1	99	74.943	ENSMICG00000004895	CLP1	99	75.174	Microcebus_murinus
ENSXMAG00000009783	clp1	98	75.000	ENSMOCG00000005498	Clp1	99	75.000	Microtus_ochrogaster
ENSXMAG00000009783	clp1	100	92.971	ENSMMOG00000003229	clp1	100	92.971	Mola_mola
ENSXMAG00000009783	clp1	98	75.000	ENSMODG00000020107	-	99	75.000	Monodelphis_domestica
ENSXMAG00000009783	clp1	98	75.000	ENSMODG00000024148	-	99	75.000	Monodelphis_domestica
ENSXMAG00000009783	clp1	100	95.238	ENSMALG00000014239	clp1	100	95.238	Monopterus_albus
ENSXMAG00000009783	clp1	98	74.769	MGP_CAROLIEiJ_G0023726	Clp1	99	74.769	Mus_caroli
ENSXMAG00000009783	clp1	98	74.769	ENSMUSG00000027079	Clp1	99	74.769	Mus_musculus
ENSXMAG00000009783	clp1	98	74.537	MGP_PahariEiJ_G0025177	Clp1	99	74.537	Mus_pahari
ENSXMAG00000009783	clp1	98	74.769	MGP_SPRETEiJ_G0024646	Clp1	99	74.769	Mus_spretus
ENSXMAG00000009783	clp1	98	75.174	ENSMPUG00000000268	CLP1	99	75.174	Mustela_putorius_furo
ENSXMAG00000009783	clp1	98	75.406	ENSMLUG00000007904	CLP1	99	75.406	Myotis_lucifugus
ENSXMAG00000009783	clp1	98	74.942	ENSNGAG00000006165	Clp1	99	74.942	Nannospalax_galili
ENSXMAG00000009783	clp1	100	94.331	ENSNBRG00000005225	clp1	100	94.331	Neolamprologus_brichardi
ENSXMAG00000009783	clp1	80	69.141	ENSNLEG00000012809	-	99	69.141	Nomascus_leucogenys
ENSXMAG00000009783	clp1	98	74.885	ENSMEUG00000010949	CLP1	100	74.885	Notamacropus_eugenii
ENSXMAG00000009783	clp1	69	76.898	ENSOPRG00000007329	CLP1	100	76.898	Ochotona_princeps
ENSXMAG00000009783	clp1	98	75.406	ENSODEG00000011410	CLP1	99	75.406	Octodon_degus
ENSXMAG00000009783	clp1	100	94.558	ENSONIG00000005089	clp1	100	94.558	Oreochromis_niloticus
ENSXMAG00000009783	clp1	98	75.174	ENSOCUG00000007045	CLP1	99	75.174	Oryctolagus_cuniculus
ENSXMAG00000009783	clp1	100	94.331	ENSORLG00000003647	clp1	100	94.331	Oryzias_latipes
ENSXMAG00000009783	clp1	100	94.104	ENSORLG00020016676	clp1	100	94.104	Oryzias_latipes_hni
ENSXMAG00000009783	clp1	100	94.331	ENSORLG00015019484	clp1	100	94.331	Oryzias_latipes_hsok
ENSXMAG00000009783	clp1	100	94.331	ENSOMEG00000021303	clp1	100	94.331	Oryzias_melastigma
ENSXMAG00000009783	clp1	98	75.406	ENSOGAG00000004508	CLP1	99	75.406	Otolemur_garnettii
ENSXMAG00000009783	clp1	98	74.424	ENSOARG00000010145	CLP1	99	74.424	Ovis_aries
ENSXMAG00000009783	clp1	99	75.172	ENSPPAG00000041519	CLP1	99	75.638	Pan_paniscus
ENSXMAG00000009783	clp1	98	75.406	ENSPPRG00000006135	CLP1	99	75.406	Panthera_pardus
ENSXMAG00000009783	clp1	98	75.406	ENSPTIG00000015866	CLP1	99	75.406	Panthera_tigris_altaica
ENSXMAG00000009783	clp1	98	75.638	ENSPTRG00000047318	CLP1	99	75.638	Pan_troglodytes
ENSXMAG00000009783	clp1	99	75.172	ENSPANG00000017078	CLP1	98	75.172	Papio_anubis
ENSXMAG00000009783	clp1	100	84.719	ENSPKIG00000007697	clp1	100	85.393	Paramormyrops_kingsleyae
ENSXMAG00000009783	clp1	93	72.372	ENSPSIG00000005468	CLP1	99	72.372	Pelodiscus_sinensis
ENSXMAG00000009783	clp1	100	92.290	ENSPMGG00000012171	clp1	100	92.290	Periophthalmus_magnuspinnatus
ENSXMAG00000009783	clp1	98	75.000	ENSPEMG00000011213	-	99	75.000	Peromyscus_maniculatus_bairdii
ENSXMAG00000009783	clp1	95	67.696	ENSPMAG00000006707	clp1	97	67.696	Petromyzon_marinus
ENSXMAG00000009783	clp1	98	75.463	ENSPCIG00000011899	CLP1	99	75.463	Phascolarctos_cinereus
ENSXMAG00000009783	clp1	100	99.320	ENSPFOG00000008169	clp1	100	99.320	Poecilia_formosa
ENSXMAG00000009783	clp1	100	99.320	ENSPLAG00000022388	clp1	100	99.320	Poecilia_latipinna
ENSXMAG00000009783	clp1	100	99.320	ENSPMEG00000021088	clp1	100	99.320	Poecilia_mexicana
ENSXMAG00000009783	clp1	100	99.320	ENSPREG00000017802	clp1	100	99.320	Poecilia_reticulata
ENSXMAG00000009783	clp1	52	73.799	ENSPPYG00000003266	-	100	73.799	Pongo_abelii
ENSXMAG00000009783	clp1	99	74.943	ENSPCOG00000000360	CLP1	99	74.943	Propithecus_coquereli
ENSXMAG00000009783	clp1	98	75.174	ENSPVAG00000016270	CLP1	99	75.174	Pteropus_vampyrus
ENSXMAG00000009783	clp1	100	94.331	ENSPNYG00000017274	clp1	99	94.331	Pundamilia_nyererei
ENSXMAG00000009783	clp1	100	84.821	ENSPNAG00000026460	clp1	100	85.268	Pygocentrus_nattereri
ENSXMAG00000009783	clp1	98	74.769	ENSRNOG00000007416	Clp1	99	74.769	Rattus_norvegicus
ENSXMAG00000009783	clp1	98	75.638	ENSRBIG00000018191	CLP1	99	75.638	Rhinopithecus_bieti
ENSXMAG00000009783	clp1	99	75.172	ENSRROG00000039265	CLP1	99	75.638	Rhinopithecus_roxellana
ENSXMAG00000009783	clp1	94	62.802	ENSSBOG00000010558	-	93	62.802	Saimiri_boliviensis_boliviensis
ENSXMAG00000009783	clp1	98	75.638	ENSSBOG00000032517	-	99	75.638	Saimiri_boliviensis_boliviensis
ENSXMAG00000009783	clp1	98	75.231	ENSSHAG00000015695	CLP1	99	75.231	Sarcophilus_harrisii
ENSXMAG00000009783	clp1	100	83.223	ENSSFOG00015000628	clp1	100	83.223	Scleropages_formosus
ENSXMAG00000009783	clp1	100	94.331	ENSSMAG00000019423	clp1	99	94.331	Scophthalmus_maximus
ENSXMAG00000009783	clp1	100	94.558	ENSSDUG00000014495	clp1	100	94.558	Seriola_dumerili
ENSXMAG00000009783	clp1	100	94.331	ENSSLDG00000000937	clp1	100	94.331	Seriola_lalandi_dorsalis
ENSXMAG00000009783	clp1	52	73.684	ENSSARG00000002459	CLP1	100	73.684	Sorex_araneus
ENSXMAG00000009783	clp1	98	74.769	ENSSPUG00000016811	CLP1	99	74.769	Sphenodon_punctatus
ENSXMAG00000009783	clp1	100	94.331	ENSSPAG00000016052	clp1	100	94.331	Stegastes_partitus
ENSXMAG00000009783	clp1	98	75.174	ENSSSCG00000031442	CLP1	99	75.174	Sus_scrofa
ENSXMAG00000009783	clp1	98	75.231	ENSTGUG00000007002	CLP1	99	75.231	Taeniopygia_guttata
ENSXMAG00000009783	clp1	100	90.249	ENSTRUG00000012602	clp1	100	90.249	Takifugu_rubripes
ENSXMAG00000009783	clp1	100	90.703	ENSTNIG00000013125	clp1	100	90.703	Tetraodon_nigroviridis
ENSXMAG00000009783	clp1	98	74.710	ENSTBEG00000009975	CLP1	99	74.710	Tupaia_belangeri
ENSXMAG00000009783	clp1	98	75.174	ENSTTRG00000002096	CLP1	99	75.174	Tursiops_truncatus
ENSXMAG00000009783	clp1	98	75.174	ENSUAMG00000011388	CLP1	99	75.174	Ursus_americanus
ENSXMAG00000009783	clp1	98	75.174	ENSUMAG00000018317	CLP1	99	75.174	Ursus_maritimus
ENSXMAG00000009783	clp1	100	74.150	ENSVVUG00000017138	CLP1	99	74.150	Vulpes_vulpes
ENSXMAG00000009783	clp1	98	72.055	ENSXETG00000007088	clp1	97	72.286	Xenopus_tropicalis
ENSXMAG00000009783	clp1	100	100.000	ENSXCOG00000002287	clp1	100	100.000	Xiphophorus_couchianus