EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000009784 (Gene tree)
Gene ID
102220704
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specificity factor subunit 3-like
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
7860 bases
Position
chr15:3983169-3991028
Accession
102220704
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000034926CPSF73-100_CPF11718.82e-5311
ENSXMAP00000009824CPSF73-100_CPF11718.82.3e-5311
ENSXMAP00000034926Beta-CaspPF10996.81.1e-3311
ENSXMAP00000009824Beta-CaspPF10996.81.3e-3311
ENSXMAP00000009824Lactamase_BPF00753.271.8e-1811
ENSXMAP00000034926Lactamase_BPF00753.273.9e-1511
ENSXMAP00000034926RMMBLPF07521.121.7e-2111
ENSXMAP00000009824RMMBLPF07521.121.9e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000038532-3201-ENSXMAP00000034926642 (aa)--
ENSXMAT00000009838-2809XM_005808685ENSXMAP00000009824686 (aa)XP_005808742M4A5T0
Gene Model
Click here to download ENSXMAG00000009784's gene model file
Pathways
Pathway IDPathway NameSource
xma03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000009784's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000009784cpsf39984.751ENSG00000119203CPSF310098.529Homo_sapiens
ENSXMAG00000009784cpsf310093.878ENSAPOG00000022087cpsf310093.878Acanthochromis_polyacanthus
ENSXMAG00000009784cpsf37495.678ENSAPOG00000012241CPSF39195.678Acanthochromis_polyacanthus
ENSXMAG00000009784cpsf39984.897ENSAMEG00000008493CPSF39984.897Ailuropoda_melanoleuca
ENSXMAG00000009784cpsf39788.179ENSACIG00000009846cpsf39988.179Amphilophus_citrinellus
ENSXMAG00000009784cpsf39784.311ENSACIG00000023663CPSF39984.311Amphilophus_citrinellus
ENSXMAG00000009784cpsf310086.812ENSAOCG00000010077CPSF310086.812Amphiprion_ocellaris
ENSXMAG00000009784cpsf310093.586ENSAOCG00000022056cpsf310093.586Amphiprion_ocellaris
ENSXMAG00000009784cpsf310093.732ENSAPEG00000019526cpsf39995.129Amphiprion_percula
ENSXMAG00000009784cpsf310086.812ENSAPEG00000021167CPSF310086.812Amphiprion_percula
ENSXMAG00000009784cpsf310082.198ENSATEG00000014525CPSF39982.874Anabas_testudineus
ENSXMAG00000009784cpsf39992.836ENSATEG00000003959cpsf39992.836Anabas_testudineus
ENSXMAG00000009784cpsf39983.901ENSAPLG00000006941CPSF39884.054Anas_platyrhynchos
ENSXMAG00000009784cpsf39882.205ENSACAG00000001759CPSF39982.205Anolis_carolinensis
ENSXMAG00000009784cpsf39979.912ENSANAG00000031254CPSF39980.510Aotus_nancymaae
ENSXMAG00000009784cpsf310093.146ENSACLG00000014484cpsf39993.353Astatotilapia_calliptera
ENSXMAG00000009784cpsf39784.628ENSACLG00000018846CPSF39984.628Astatotilapia_calliptera
ENSXMAG00000009784cpsf310086.232ENSAMXG00000004786cpsf310086.232Astyanax_mexicanus
ENSXMAG00000009784cpsf39984.897ENSBTAG00000019735CPSF39984.897Bos_taurus
ENSXMAG00000009784cpsf39357.259WBGene00013460cpsf-39157.209Caenorhabditis_elegans
ENSXMAG00000009784cpsf39984.604ENSCJAG00000006276CPSF39984.604Callithrix_jacchus
ENSXMAG00000009784cpsf39984.897ENSCAFG00000003375CPSF39584.897Canis_familiaris
ENSXMAG00000009784cpsf39087.379ENSCAFG00020026799CPSF39987.379Canis_lupus_dingo
ENSXMAG00000009784cpsf39984.897ENSCHIG00000013973CPSF39984.897Capra_hircus
ENSXMAG00000009784cpsf39984.751ENSTSYG00000002967CPSF39984.751Carlito_syrichta
ENSXMAG00000009784cpsf39984.056ENSCAPG00000013851CPSF39984.535Cavia_aperea
ENSXMAG00000009784cpsf39984.457ENSCPOG00000011299CPSF39984.457Cavia_porcellus
ENSXMAG00000009784cpsf39984.604ENSCCAG00000036730CPSF39984.708Cebus_capucinus
ENSXMAG00000009784cpsf39982.991ENSCATG00000014770CPSF39990.501Cercocebus_atys
ENSXMAG00000009784cpsf39984.457ENSCLAG00000002727CPSF39984.457Chinchilla_lanigera
ENSXMAG00000009784cpsf39976.833ENSCSAG00000007125CPSF39976.833Chlorocebus_sabaeus
ENSXMAG00000009784cpsf385100.000ENSCHOG00000000180CPSF38560.457Choloepus_hoffmanni
ENSXMAG00000009784cpsf39984.783ENSCPBG00000014074CPSF39984.783Chrysemys_picta_bellii
ENSXMAG00000009784cpsf39967.593ENSCING00000007214-9867.548Ciona_intestinalis
ENSXMAG00000009784cpsf39974.964ENSCANG00000034435CPSF39974.964Colobus_angolensis_palliatus
ENSXMAG00000009784cpsf39984.457ENSCGRG00001013134Cpsf39984.457Cricetulus_griseus_chok1gshd
ENSXMAG00000009784cpsf39984.457ENSCGRG00000018319Cpsf39984.457Cricetulus_griseus_crigri
ENSXMAG00000009784cpsf310085.626ENSCSEG00000002021CPSF310085.626Cynoglossus_semilaevis
ENSXMAG00000009784cpsf310086.522ENSCVAG00000015067CPSF310086.522Cyprinodon_variegatus
ENSXMAG00000009784cpsf310086.812ENSDARG00000027649cpsf310086.812Danio_rerio
ENSXMAG00000009784cpsf39983.748ENSDNOG00000008940CPSF39583.748Dasypus_novemcinctus
ENSXMAG00000009784cpsf39586.000ENSDORG00000014263Cpsf39986.000Dipodomys_ordii
ENSXMAG00000009784cpsf39966.372FBgn0261065Cpsf739966.372Drosophila_melanogaster
ENSXMAG00000009784cpsf39576.346ENSETEG00000003893CPSF39974.000Echinops_telfairi
ENSXMAG00000009784cpsf39974.189ENSEBUG00000009018cpsf39974.189Eptatretus_burgeri
ENSXMAG00000009784cpsf39984.897ENSEASG00005003970CPSF39984.897Equus_asinus_asinus
ENSXMAG00000009784cpsf39984.897ENSECAG00000019911CPSF39689.899Equus_caballus
ENSXMAG00000009784cpsf39970.088ENSEEUG00000015422CPSF39970.088Erinaceus_europaeus
ENSXMAG00000009784cpsf39989.099ENSELUG00000013775cpsf39989.099Esox_lucius
ENSXMAG00000009784cpsf39984.897ENSFCAG00000007852CPSF39984.897Felis_catus
ENSXMAG00000009784cpsf310084.235ENSFALG00000006572CPSF310084.235Ficedula_albicollis
ENSXMAG00000009784cpsf39984.141ENSFDAG00000006317CPSF39984.141Fukomys_damarensis
ENSXMAG00000009784cpsf36265.366ENSFHEG00000012186CPSF310065.366Fundulus_heteroclitus
ENSXMAG00000009784cpsf310096.501ENSFHEG00000014774cpsf310096.501Fundulus_heteroclitus
ENSXMAG00000009784cpsf310089.260ENSGMOG00000003157cpsf310089.260Gadus_morhua
ENSXMAG00000009784cpsf310084.080ENSGALG00000016424CPSF39984.615Gallus_gallus
ENSXMAG00000009784cpsf310087.391ENSGAFG00000008016CPSF310087.391Gambusia_affinis
ENSXMAG00000009784cpsf39896.044ENSGAFG00000019449cpsf310096.044Gambusia_affinis
ENSXMAG00000009784cpsf37279.443ENSGAGG00000025583CPSF39379.443Gopherus_agassizii
ENSXMAG00000009784cpsf39884.069ENSGGOG00000001757CPSF39196.360Gorilla_gorilla
ENSXMAG00000009784cpsf310093.440ENSHBUG00000001188cpsf310093.440Haplochromis_burtoni
ENSXMAG00000009784cpsf36278.025ENSHBUG00000014332CPSF310078.025Haplochromis_burtoni
ENSXMAG00000009784cpsf39984.141ENSHGLG00000000666CPSF39984.141Heterocephalus_glaber_female
ENSXMAG00000009784cpsf39984.141ENSHGLG00100007765CPSF39984.141Heterocephalus_glaber_male
ENSXMAG00000009784cpsf39985.486ENSHCOG00000015957CPSF39985.486Hippocampus_comes
ENSXMAG00000009784cpsf39991.420ENSHCOG00000007251cpsf39991.387Hippocampus_comes
ENSXMAG00000009784cpsf310086.957ENSIPUG00000023488cpsf310086.957Ictalurus_punctatus
ENSXMAG00000009784cpsf39984.457ENSSTOG00000004476CPSF39984.457Ictidomys_tridecemlineatus
ENSXMAG00000009784cpsf310083.617ENSJJAG00000023415Cpsf39984.187Jaculus_jaculus
ENSXMAG00000009784cpsf310086.087ENSKMAG00000007317CPSF310086.087Kryptolebias_marmoratus
ENSXMAG00000009784cpsf310094.169ENSKMAG00000002806cpsf310094.169Kryptolebias_marmoratus
ENSXMAG00000009784cpsf39983.918ENSLBEG00000020569cpsf39683.918Labrus_bergylta
ENSXMAG00000009784cpsf35886.400ENSLBEG00000015018-9986.400Labrus_bergylta
ENSXMAG00000009784cpsf39688.128ENSLBEG00000013492CPSF39988.128Labrus_bergylta
ENSXMAG00000009784cpsf39978.665ENSLACG00000008308CPSF39978.665Latimeria_chalumnae
ENSXMAG00000009784cpsf310086.724ENSLOCG00000016823cpsf310086.724Lepisosteus_oculatus
ENSXMAG00000009784cpsf39984.520ENSLAFG00000009467CPSF39983.947Loxodonta_africana
ENSXMAG00000009784cpsf39984.604ENSMFAG00000001339CPSF39593.361Macaca_fascicularis
ENSXMAG00000009784cpsf39984.211ENSMMUG00000018038CPSF39293.361Macaca_mulatta
ENSXMAG00000009784cpsf39970.279ENSMNEG00000039447CPSF39470.279Macaca_nemestrina
ENSXMAG00000009784cpsf39984.751ENSMLEG00000026825CPSF39296.352Mandrillus_leucophaeus
ENSXMAG00000009784cpsf39784.019ENSMAMG00000008835CPSF39984.019Mastacembelus_armatus
ENSXMAG00000009784cpsf310091.837ENSMAMG00000003076cpsf310091.837Mastacembelus_armatus
ENSXMAG00000009784cpsf310093.440ENSMZEG00005014358cpsf310093.440Maylandia_zebra
ENSXMAG00000009784cpsf310086.667ENSMZEG00005006258CPSF310086.667Maylandia_zebra
ENSXMAG00000009784cpsf310084.080ENSMGAG00000013995CPSF310084.558Meleagris_gallopavo
ENSXMAG00000009784cpsf35874.667ENSMAUG00000000166Cpsf39974.667Mesocricetus_auratus
ENSXMAG00000009784cpsf39979.971ENSMICG00000002363CPSF39979.971Microcebus_murinus
ENSXMAG00000009784cpsf39982.006ENSMOCG00000020067Cpsf39982.006Microtus_ochrogaster
ENSXMAG00000009784cpsf37776.786ENSMMOG00000011923CPSF38576.786Mola_mola
ENSXMAG00000009784cpsf39986.406ENSMMOG00000018212CPSF39886.406Mola_mola
ENSXMAG00000009784cpsf39983.309ENSMODG00000014703CPSF39983.309Monodelphis_domestica
ENSXMAG00000009784cpsf310092.711ENSMALG00000016416cpsf310092.711Monopterus_albus
ENSXMAG00000009784cpsf39882.547ENSMALG00000011474CPSF39982.547Monopterus_albus
ENSXMAG00000009784cpsf39985.044MGP_CAROLIEiJ_G0017640Cpsf39985.044Mus_caroli
ENSXMAG00000009784cpsf39985.044ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSXMAG00000009784cpsf39984.897MGP_PahariEiJ_G0029397Cpsf39984.897Mus_pahari
ENSXMAG00000009784cpsf39985.044MGP_SPRETEiJ_G0018481Cpsf39985.044Mus_spretus
ENSXMAG00000009784cpsf39984.875ENSMPUG00000013213CPSF39984.875Mustela_putorius_furo
ENSXMAG00000009784cpsf39984.773ENSMLUG00000010636CPSF39984.773Myotis_lucifugus
ENSXMAG00000009784cpsf39984.751ENSNGAG00000019836Cpsf39984.751Nannospalax_galili
ENSXMAG00000009784cpsf310093.294ENSNBRG00000004770cpsf310093.294Neolamprologus_brichardi
ENSXMAG00000009784cpsf39784.628ENSNBRG00000010525CPSF39984.628Neolamprologus_brichardi
ENSXMAG00000009784cpsf39984.604ENSNLEG00000013359CPSF39196.360Nomascus_leucogenys
ENSXMAG00000009784cpsf39955.814ENSMEUG00000013117-9954.692Notamacropus_eugenii
ENSXMAG00000009784cpsf39976.505ENSOPRG00000008902CPSF39976.505Ochotona_princeps
ENSXMAG00000009784cpsf39984.604ENSODEG00000003129CPSF39984.604Octodon_degus
ENSXMAG00000009784cpsf310092.857ENSONIG00000018812cpsf310092.857Oreochromis_niloticus
ENSXMAG00000009784cpsf38781.883ENSOANG00000008577CPSF39981.883Ornithorhynchus_anatinus
ENSXMAG00000009784cpsf39984.897ENSOCUG00000003728CPSF39984.897Oryctolagus_cuniculus
ENSXMAG00000009784cpsf310092.679ENSORLG00000018854cpsf310092.566Oryzias_latipes
ENSXMAG00000009784cpsf310092.523ENSORLG00020013331cpsf310092.420Oryzias_latipes_hni
ENSXMAG00000009784cpsf310092.679ENSORLG00015011017cpsf310092.566Oryzias_latipes_hsok
ENSXMAG00000009784cpsf310092.420ENSOMEG00000010647cpsf39692.420Oryzias_melastigma
ENSXMAG00000009784cpsf39974.780ENSOGAG00000001680CPSF39974.780Otolemur_garnettii
ENSXMAG00000009784cpsf39984.897ENSOARG00000015073CPSF39984.897Ovis_aries
ENSXMAG00000009784cpsf39984.751ENSPPAG00000042457CPSF39196.360Pan_paniscus
ENSXMAG00000009784cpsf39984.751ENSPPRG00000016790CPSF39984.897Panthera_pardus
ENSXMAG00000009784cpsf39984.365ENSPTIG00000003920CPSF39985.272Panthera_tigris_altaica
ENSXMAG00000009784cpsf39984.751ENSPTRG00000011638CPSF39196.360Pan_troglodytes
ENSXMAG00000009784cpsf39984.751ENSPANG00000016798CPSF39593.361Papio_anubis
ENSXMAG00000009784cpsf310087.101ENSPKIG00000023646cpsf310087.101Paramormyrops_kingsleyae
ENSXMAG00000009784cpsf310084.235ENSPSIG00000016144CPSF39983.871Pelodiscus_sinensis
ENSXMAG00000009784cpsf36278.272ENSPMGG00000015311CPSF310078.272Periophthalmus_magnuspinnatus
ENSXMAG00000009784cpsf38890.123ENSPMGG00000006141-9983.840Periophthalmus_magnuspinnatus
ENSXMAG00000009784cpsf39984.457ENSPEMG00000017668Cpsf39984.604Peromyscus_maniculatus_bairdii
ENSXMAG00000009784cpsf37988.950ENSPMAG00000004841cpsf39988.950Petromyzon_marinus
ENSXMAG00000009784cpsf39983.901ENSPCIG00000009823CPSF39884.663Phascolarctos_cinereus
ENSXMAG00000009784cpsf310087.101ENSPFOG00000010418-10087.101Poecilia_formosa
ENSXMAG00000009784cpsf310098.688ENSPFOG00000015922cpsf310098.688Poecilia_formosa
ENSXMAG00000009784cpsf36279.753ENSPLAG00000021300-10079.753Poecilia_latipinna
ENSXMAG00000009784cpsf310098.688ENSPLAG00000000882cpsf310098.688Poecilia_latipinna
ENSXMAG00000009784cpsf310098.834ENSPMEG00000018309cpsf310098.834Poecilia_mexicana
ENSXMAG00000009784cpsf310081.594ENSPREG00000004482CPSF310081.594Poecilia_reticulata
ENSXMAG00000009784cpsf39895.411ENSPREG00000014875cpsf310095.411Poecilia_reticulata
ENSXMAG00000009784cpsf39980.499ENSPPYG00000012666CPSF39980.499Pongo_abelii
ENSXMAG00000009784cpsf38566.667ENSPCAG00000015042CPSF38964.474Procavia_capensis
ENSXMAG00000009784cpsf38788.256ENSPCOG00000023016CPSF39788.256Propithecus_coquereli
ENSXMAG00000009784cpsf39985.022ENSPVAG00000005324CPSF39985.022Pteropus_vampyrus
ENSXMAG00000009784cpsf310093.440ENSPNYG00000004405cpsf310093.440Pundamilia_nyererei
ENSXMAG00000009784cpsf38490.775ENSPNYG00000021047CPSF39090.775Pundamilia_nyererei
ENSXMAG00000009784cpsf310086.667ENSPNAG00000023060cpsf310086.667Pygocentrus_nattereri
ENSXMAG00000009784cpsf39985.022ENSRNOG00000052418Cpsf39985.022Rattus_norvegicus
ENSXMAG00000009784cpsf39980.775ENSRBIG00000041615CPSF39980.805Rhinopithecus_bieti
ENSXMAG00000009784cpsf39984.751ENSRROG00000033792CPSF39984.751Rhinopithecus_roxellana
ENSXMAG00000009784cpsf39938.286YLR277CYSH19838.802Saccharomyces_cerevisiae
ENSXMAG00000009784cpsf39980.650ENSSBOG00000027263CPSF39781.231Saimiri_boliviensis_boliviensis
ENSXMAG00000009784cpsf39984.604ENSSHAG00000007024CPSF39984.604Sarcophilus_harrisii
ENSXMAG00000009784cpsf310086.812ENSSFOG00015002108cpsf310086.812Scleropages_formosus
ENSXMAG00000009784cpsf39687.671ENSSMAG00000020534CPSF39787.671Scophthalmus_maximus
ENSXMAG00000009784cpsf310092.711ENSSDUG00000002828cpsf39792.711Seriola_dumerili
ENSXMAG00000009784cpsf310086.522ENSSDUG00000018498CPSF310086.522Seriola_dumerili
ENSXMAG00000009784cpsf310086.522ENSSLDG00000005234CPSF310086.522Seriola_lalandi_dorsalis
ENSXMAG00000009784cpsf310092.420ENSSLDG00000008469cpsf39792.420Seriola_lalandi_dorsalis
ENSXMAG00000009784cpsf38982.519ENSSARG00000005186CPSF39082.519Sorex_araneus
ENSXMAG00000009784cpsf39982.769ENSSPUG00000015525CPSF39783.284Sphenodon_punctatus
ENSXMAG00000009784cpsf310093.003ENSSPAG00000018579cpsf310093.003Stegastes_partitus
ENSXMAG00000009784cpsf310086.522ENSSPAG00000002906CPSF310086.522Stegastes_partitus
ENSXMAG00000009784cpsf39984.897ENSSSCG00000020799CPSF39984.897Sus_scrofa
ENSXMAG00000009784cpsf310083.926ENSTGUG00000013016CPSF310084.357Taeniopygia_guttata
ENSXMAG00000009784cpsf39989.766ENSTRUG00000007030cpsf39889.766Takifugu_rubripes
ENSXMAG00000009784cpsf36271.287ENSTRUG00000013905CPSF39971.287Takifugu_rubripes
ENSXMAG00000009784cpsf38490.110ENSTBEG00000002707CPSF38490.110Tupaia_belangeri
ENSXMAG00000009784cpsf38673.123ENSTTRG00000000861CPSF38773.123Tursiops_truncatus
ENSXMAG00000009784cpsf39785.185ENSUAMG00000007535CPSF39485.540Ursus_americanus
ENSXMAG00000009784cpsf39984.520ENSUMAG00000003676CPSF39489.785Ursus_maritimus
ENSXMAG00000009784cpsf39584.853ENSVPAG00000008041CPSF310085.331Vicugna_pacos
ENSXMAG00000009784cpsf39984.897ENSVVUG00000002194CPSF39984.897Vulpes_vulpes
ENSXMAG00000009784cpsf39983.164ENSXETG00000008263cpsf39983.164Xenopus_tropicalis
ENSXMAG00000009784cpsf310099.221ENSXCOG00000019695cpsf310099.125Xiphophorus_couchianus
ENSXMAG00000009784cpsf35778.495ENSXCOG00000000957-8778.495Xiphophorus_couchianus
ENSXMAG00000009784cpsf310087.536ENSXMAG00000027291CPSF310087.536Xiphophorus_maculatus

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