EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000010321 (Gene tree)
Gene ID: 102238347
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 15114 bases
Position: chr11:30839194-30854307
Accession: 102238347
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000010343	EST1	PF10374.9	1.5e-12	1	1
ENSXMAP00000010343	EST1_DNA_bind	PF10373.9	1.3e-54	1	1
ENSXMAP00000010343	PIN_4	PF13638.6	3.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000010357	-	8208	XM_014473819	ENSXMAP00000010343	1618 (aa)	XP_014329305	M4A799

Gene Model

Click here to download ENSXMAG00000010321's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000010321's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000010321	smg6	74	54.105	ENSG00000070366	SMG6	100	57.482	Homo_sapiens
ENSXMAG00000010321	smg6	100	72.135	ENSAPOG00000019448	smg6	100	72.936	Acanthochromis_polyacanthus
ENSXMAG00000010321	smg6	74	54.396	ENSAMEG00000007632	SMG6	83	54.360	Ailuropoda_melanoleuca
ENSXMAG00000010321	smg6	93	70.519	ENSACIG00000012997	smg6	100	70.455	Amphilophus_citrinellus
ENSXMAG00000010321	smg6	100	72.908	ENSAOCG00000002630	smg6	100	73.586	Amphiprion_ocellaris
ENSXMAG00000010321	smg6	100	72.694	ENSAPEG00000019101	smg6	100	73.373	Amphiprion_percula
ENSXMAG00000010321	smg6	100	69.935	ENSATEG00000006483	smg6	100	70.588	Anabas_testudineus
ENSXMAG00000010321	smg6	62	49.141	ENSACAG00000011783	SMG6	72	53.267	Anolis_carolinensis
ENSXMAG00000010321	smg6	74	54.524	ENSANAG00000035760	SMG6	83	54.617	Aotus_nancymaae
ENSXMAG00000010321	smg6	100	69.599	ENSACLG00000005288	smg6	100	71.217	Astatotilapia_calliptera
ENSXMAG00000010321	smg6	75	66.604	ENSAMXG00000017326	smg6	93	66.418	Astyanax_mexicanus
ENSXMAG00000010321	smg6	74	54.738	ENSBTAG00000000267	SMG6	83	54.702	Bos_taurus
ENSXMAG00000010321	smg6	74	54.439	ENSCJAG00000001820	SMG6	83	54.460	Callithrix_jacchus
ENSXMAG00000010321	smg6	74	54.317	ENSCAFG00000019260	SMG6	83	54.389	Canis_familiaris
ENSXMAG00000010321	smg6	74	54.317	ENSCAFG00020009770	SMG6	83	54.389	Canis_lupus_dingo
ENSXMAG00000010321	smg6	74	54.617	ENSCHIG00000021998	SMG6	83	54.346	Capra_hircus
ENSXMAG00000010321	smg6	85	54.027	ENSTSYG00000003406	SMG6	100	57.091	Carlito_syrichta
ENSXMAG00000010321	smg6	74	46.006	ENSCAPG00000016197	SMG6	81	48.879	Cavia_aperea
ENSXMAG00000010321	smg6	74	53.481	ENSCPOG00000014878	SMG6	83	60.096	Cavia_porcellus
ENSXMAG00000010321	smg6	74	54.418	ENSCCAG00000035801	SMG6	83	54.460	Cebus_capucinus
ENSXMAG00000010321	smg6	74	53.948	ENSCATG00000031956	SMG6	83	54.304	Cercocebus_atys
ENSXMAG00000010321	smg6	74	53.468	ENSCLAG00000006748	SMG6	82	59.615	Chinchilla_lanigera
ENSXMAG00000010321	smg6	74	54.183	ENSCSAG00000013800	SMG6	83	54.538	Chlorocebus_sabaeus
ENSXMAG00000010321	smg6	90	54.375	ENSCPBG00000020369	SMG6	99	54.141	Chrysemys_picta_bellii
ENSXMAG00000010321	smg6	74	54.261	ENSCANG00000031764	SMG6	100	57.847	Colobus_angolensis_palliatus
ENSXMAG00000010321	smg6	74	49.406	ENSCGRG00000007782	Smg6	84	49.961	Cricetulus_griseus_crigri
ENSXMAG00000010321	smg6	100	65.160	ENSCSEG00000012757	smg6	100	64.982	Cynoglossus_semilaevis
ENSXMAG00000010321	smg6	100	82.761	ENSCVAG00000012789	smg6	100	82.945	Cyprinodon_variegatus
ENSXMAG00000010321	smg6	100	56.432	ENSDARG00000100481	smg6	100	55.872	Danio_rerio
ENSXMAG00000010321	smg6	74	53.678	ENSDNOG00000048283	SMG6	83	54.069	Dasypus_novemcinctus
ENSXMAG00000010321	smg6	74	50.857	ENSDORG00000016614	Smg6	83	60.096	Dipodomys_ordii
ENSXMAG00000010321	smg6	67	87.500	ENSETEG00000016790	SMG6	70	87.500	Echinops_telfairi
ENSXMAG00000010321	smg6	57	49.224	ENSEBUG00000005059	smg6	60	49.011	Eptatretus_burgeri
ENSXMAG00000010321	smg6	74	54.003	ENSEASG00005009318	SMG6	83	54.560	Equus_asinus_asinus
ENSXMAG00000010321	smg6	74	54.003	ENSECAG00000006519	SMG6	83	54.560	Equus_caballus
ENSXMAG00000010321	smg6	74	46.515	ENSEEUG00000003493	SMG6	84	46.473	Erinaceus_europaeus
ENSXMAG00000010321	smg6	77	71.191	ENSELUG00000005934	smg6	82	68.107	Esox_lucius
ENSXMAG00000010321	smg6	74	54.281	ENSFCAG00000028817	SMG6	83	54.517	Felis_catus
ENSXMAG00000010321	smg6	81	51.242	ENSFALG00000006538	SMG6	88	53.645	Ficedula_albicollis
ENSXMAG00000010321	smg6	85	53.535	ENSFDAG00000015106	SMG6	94	53.762	Fukomys_damarensis
ENSXMAG00000010321	smg6	100	85.301	ENSFHEG00000013282	smg6	100	86.162	Fundulus_heteroclitus
ENSXMAG00000010321	smg6	90	53.282	ENSGALG00000003108	SMG6	98	53.282	Gallus_gallus
ENSXMAG00000010321	smg6	100	95.373	ENSGAFG00000000379	smg6	100	95.373	Gambusia_affinis
ENSXMAG00000010321	smg6	88	71.482	ENSGACG00000020521	smg6	100	71.418	Gasterosteus_aculeatus
ENSXMAG00000010321	smg6	75	53.281	ENSGAGG00000025617	SMG6	85	53.443	Gopherus_agassizii
ENSXMAG00000010321	smg6	74	54.339	ENSGGOG00000017156	SMG6	83	54.382	Gorilla_gorilla
ENSXMAG00000010321	smg6	100	69.599	ENSHBUG00000021311	smg6	100	70.395	Haplochromis_burtoni
ENSXMAG00000010321	smg6	74	53.906	ENSHGLG00000012882	SMG6	89	57.080	Heterocephalus_glaber_female
ENSXMAG00000010321	smg6	74	53.906	ENSHGLG00100017815	SMG6	89	57.080	Heterocephalus_glaber_male
ENSXMAG00000010321	smg6	65	68.802	ENSHCOG00000008761	smg6	83	67.996	Hippocampus_comes
ENSXMAG00000010321	smg6	100	53.341	ENSIPUG00000012493	smg6	100	52.969	Ictalurus_punctatus
ENSXMAG00000010321	smg6	74	53.762	ENSSTOG00000028127	SMG6	83	59.135	Ictidomys_tridecemlineatus
ENSXMAG00000010321	smg6	54	50.844	ENSJJAG00000015367	Smg6	76	49.447	Jaculus_jaculus
ENSXMAG00000010321	smg6	100	74.385	ENSKMAG00000000279	smg6	100	74.820	Kryptolebias_marmoratus
ENSXMAG00000010321	smg6	100	68.795	ENSLBEG00000002184	smg6	100	69.112	Labrus_bergylta
ENSXMAG00000010321	smg6	51	41.453	ENSLACG00000000806	-	97	42.536	Latimeria_chalumnae
ENSXMAG00000010321	smg6	74	53.390	ENSLAFG00000001261	SMG6	87	52.897	Loxodonta_africana
ENSXMAG00000010321	smg6	74	54.183	ENSMFAG00000003394	SMG6	83	54.538	Macaca_fascicularis
ENSXMAG00000010321	smg6	74	54.105	ENSMMUG00000023161	SMG6	83	54.460	Macaca_mulatta
ENSXMAG00000010321	smg6	87	46.957	ENSMNEG00000044592	SMG6	83	51.994	Macaca_nemestrina
ENSXMAG00000010321	smg6	70	58.957	ENSMLEG00000029353	SMG6	84	58.957	Mandrillus_leucophaeus
ENSXMAG00000010321	smg6	100	70.131	ENSMAMG00000020119	smg6	100	71.410	Mastacembelus_armatus
ENSXMAG00000010321	smg6	100	69.479	ENSMZEG00005024736	smg6	100	69.970	Maylandia_zebra
ENSXMAG00000010321	smg6	53	50.274	ENSMGAG00000005401	-	81	50.710	Meleagris_gallopavo
ENSXMAG00000010321	smg6	74	54.304	ENSMICG00000012913	SMG6	83	54.346	Microcebus_murinus
ENSXMAG00000010321	smg6	100	63.839	ENSMMOG00000010883	smg6	100	64.243	Mola_mola
ENSXMAG00000010321	smg6	85	54.751	ENSMODG00000010622	SMG6	99	52.737	Monodelphis_domestica
ENSXMAG00000010321	smg6	100	68.100	ENSMALG00000001106	smg6	100	68.772	Monopterus_albus
ENSXMAG00000010321	smg6	74	53.846	MGP_CAROLIEiJ_G0016729	Smg6	87	68.571	Mus_caroli
ENSXMAG00000010321	smg6	74	53.792	ENSMUSG00000038290	Smg6	87	68.254	Mus_musculus
ENSXMAG00000010321	smg6	85	53.647	MGP_PahariEiJ_G0017866	Smg6	87	67.937	Mus_pahari
ENSXMAG00000010321	smg6	74	53.714	MGP_SPRETEiJ_G0017572	Smg6	87	67.937	Mus_spretus
ENSXMAG00000010321	smg6	74	54.581	ENSMPUG00000013046	SMG6	83	54.624	Mustela_putorius_furo
ENSXMAG00000010321	smg6	74	54.560	ENSMLUG00000005739	SMG6	83	54.897	Myotis_lucifugus
ENSXMAG00000010321	smg6	74	53.798	ENSNGAG00000007287	Smg6	89	55.947	Nannospalax_galili
ENSXMAG00000010321	smg6	97	67.758	ENSNBRG00000009511	smg6	99	70.145	Neolamprologus_brichardi
ENSXMAG00000010321	smg6	74	54.631	ENSNLEG00000017171	SMG6	100	57.482	Nomascus_leucogenys
ENSXMAG00000010321	smg6	77	53.723	ENSMEUG00000015804	SMG6	88	53.517	Notamacropus_eugenii
ENSXMAG00000010321	smg6	51	62.827	ENSOPRG00000000579	SMG6	79	63.021	Ochotona_princeps
ENSXMAG00000010321	smg6	85	48.270	ENSODEG00000008038	SMG6	94	47.627	Octodon_degus
ENSXMAG00000010321	smg6	100	69.659	ENSONIG00000005594	smg6	100	75.542	Oreochromis_niloticus
ENSXMAG00000010321	smg6	74	54.062	ENSOCUG00000013018	SMG6	83	53.672	Oryctolagus_cuniculus
ENSXMAG00000010321	smg6	100	66.747	ENSORLG00000003317	smg6	100	67.585	Oryzias_latipes
ENSXMAG00000010321	smg6	100	66.887	ENSORLG00020015343	smg6	100	67.367	Oryzias_latipes_hni
ENSXMAG00000010321	smg6	100	66.966	ENSORLG00015020454	smg6	100	67.806	Oryzias_latipes_hsok
ENSXMAG00000010321	smg6	100	67.930	ENSOMEG00000010838	smg6	100	68.389	Oryzias_melastigma
ENSXMAG00000010321	smg6	74	54.183	ENSOGAG00000004483	SMG6	83	54.225	Otolemur_garnettii
ENSXMAG00000010321	smg6	74	54.930	ENSOARG00000015076	SMG6	85	54.624	Ovis_aries
ENSXMAG00000010321	smg6	74	54.375	ENSPPAG00000043296	SMG6	83	54.304	Pan_paniscus
ENSXMAG00000010321	smg6	74	54.281	ENSPPRG00000014581	SMG6	83	54.517	Panthera_pardus
ENSXMAG00000010321	smg6	74	54.281	ENSPTIG00000008925	SMG6	100	57.664	Panthera_tigris_altaica
ENSXMAG00000010321	smg6	74	54.219	ENSPTRG00000008544	SMG6	100	57.482	Pan_troglodytes
ENSXMAG00000010321	smg6	74	54.105	ENSPANG00000024588	SMG6	83	54.460	Papio_anubis
ENSXMAG00000010321	smg6	67	52.302	ENSPSIG00000006660	SMG6	82	52.035	Pelodiscus_sinensis
ENSXMAG00000010321	smg6	94	78.261	ENSPMGG00000000844	smg6	99	77.989	Periophthalmus_magnuspinnatus
ENSXMAG00000010321	smg6	74	54.317	ENSPEMG00000020707	Smg6	91	56.444	Peromyscus_maniculatus_bairdii
ENSXMAG00000010321	smg6	100	94.688	ENSPFOG00000012035	smg6	100	94.750	Poecilia_formosa
ENSXMAG00000010321	smg6	100	94.812	ENSPLAG00000017660	smg6	100	94.812	Poecilia_latipinna
ENSXMAG00000010321	smg6	100	94.812	ENSPMEG00000000258	smg6	100	94.873	Poecilia_mexicana
ENSXMAG00000010321	smg6	100	94.379	ENSPREG00000010066	smg6	100	94.379	Poecilia_reticulata
ENSXMAG00000010321	smg6	74	50.311	ENSPPYG00000007790	SMG6	83	50.582	Pongo_abelii
ENSXMAG00000010321	smg6	70	59.184	ENSPCAG00000000552	SMG6	83	51.610	Procavia_capensis
ENSXMAG00000010321	smg6	74	54.027	ENSPCOG00000020925	SMG6	83	54.069	Propithecus_coquereli
ENSXMAG00000010321	smg6	70	61.686	ENSPVAG00000002159	SMG6	79	51.950	Pteropus_vampyrus
ENSXMAG00000010321	smg6	93	66.903	ENSPNYG00000024151	smg6	99	69.815	Pundamilia_nyererei
ENSXMAG00000010321	smg6	86	61.093	ENSPNAG00000015480	smg6	100	50.678	Pygocentrus_nattereri
ENSXMAG00000010321	smg6	86	53.961	ENSRNOG00000003041	Smg6	97	63.115	Rattus_norvegicus
ENSXMAG00000010321	smg6	74	54.418	ENSRBIG00000024746	SMG6	83	54.460	Rhinopithecus_bieti
ENSXMAG00000010321	smg6	74	54.418	ENSRROG00000030423	SMG6	100	57.847	Rhinopithecus_roxellana
ENSXMAG00000010321	smg6	74	54.574	ENSSBOG00000022518	SMG6	83	52.973	Saimiri_boliviensis_boliviensis
ENSXMAG00000010321	smg6	76	54.128	ENSSHAG00000010045	SMG6	85	53.805	Sarcophilus_harrisii
ENSXMAG00000010321	smg6	95	54.349	ENSSFOG00015005436	smg6	91	54.586	Scleropages_formosus
ENSXMAG00000010321	smg6	100	69.744	ENSSMAG00000019777	smg6	100	69.231	Scophthalmus_maximus
ENSXMAG00000010321	smg6	100	72.868	ENSSDUG00000016412	smg6	100	73.480	Seriola_dumerili
ENSXMAG00000010321	smg6	91	73.180	ENSSLDG00000020747	smg6	98	73.705	Seriola_lalandi_dorsalis
ENSXMAG00000010321	smg6	74	54.596	ENSSPUG00000007152	SMG6	83	54.358	Sphenodon_punctatus
ENSXMAG00000010321	smg6	100	72.908	ENSSPAG00000015633	smg6	100	73.526	Stegastes_partitus
ENSXMAG00000010321	smg6	74	54.147	ENSSSCG00000017826	SMG6	83	54.674	Sus_scrofa
ENSXMAG00000010321	smg6	81	51.496	ENSTGUG00000005836	SMG6	88	52.576	Taeniopygia_guttata
ENSXMAG00000010321	smg6	93	63.776	ENSTRUG00000000358	smg6	98	64.443	Takifugu_rubripes
ENSXMAG00000010321	smg6	91	73.569	ENSTNIG00000016164	smg6	100	72.471	Tetraodon_nigroviridis
ENSXMAG00000010321	smg6	74	51.258	ENSTBEG00000011424	SMG6	72	55.657	Tupaia_belangeri
ENSXMAG00000010321	smg6	66	55.824	ENSTTRG00000001175	SMG6	74	55.824	Tursiops_truncatus
ENSXMAG00000010321	smg6	74	54.079	ENSUAMG00000025152	SMG6	85	54.531	Ursus_americanus
ENSXMAG00000010321	smg6	74	53.991	ENSUMAG00000009306	SMG6	85	54.467	Ursus_maritimus
ENSXMAG00000010321	smg6	60	95.833	ENSVPAG00000000225	SMG6	70	95.833	Vicugna_pacos
ENSXMAG00000010321	smg6	74	54.940	ENSVVUG00000021727	SMG6	84	55.012	Vulpes_vulpes
ENSXMAG00000010321	smg6	66	54.380	ENSXETG00000023799	SMG6	76	52.972	Xenopus_tropicalis
ENSXMAG00000010321	smg6	98	94.710	ENSXCOG00000009867	smg6	99	94.710	Xiphophorus_couchianus