EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000010797 (Gene tree)
Gene ID: 102228051
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1A
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 4259 bases
Position: chr11:17754281-17758539
Accession: 102228051
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000010818	RRM_1	PF00076.22	2.3e-33	1	2
ENSXMAP00000010818	RRM_1	PF00076.22	2.3e-33	2	2
ENSXMAP00000039537	RRM_1	PF00076.22	8.2e-33	1	2
ENSXMAP00000039537	RRM_1	PF00076.22	8.2e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000010832	-	2058	XM_005805815	ENSXMAP00000010818	249 (aa)	XP_005805872	M4A8M4
ENSXMAT00000035159	-	1543	-	ENSXMAP00000039537	354 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000010797's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG
xma05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000010797's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000010797	-	75	91.979	ENSACIG00000002623	-	96	91.979	Amphilophus_citrinellus
ENSXMAG00000010797	-	93	92.797	ENSACLG00000021693	-	93	91.633	Astatotilapia_calliptera
ENSXMAG00000010797	-	79	85.714	ENSACLG00000005676	-	79	85.500	Astatotilapia_calliptera
ENSXMAG00000010797	-	76	63.402	WBGene00004700	rsp-3	75	62.887	Caenorhabditis_elegans
ENSXMAG00000010797	-	55	62.857	ENSCING00000000257	-	77	63.121	Ciona_intestinalis
ENSXMAG00000010797	-	75	71.505	ENSCING00000007375	-	77	69.474	Ciona_intestinalis
ENSXMAG00000010797	-	71	54.802	ENSCSAVG00000003567	-	79	60.145	Ciona_savignyi
ENSXMAG00000010797	-	75	70.430	ENSCSAVG00000006093	-	93	68.421	Ciona_savignyi
ENSXMAG00000010797	-	75	67.742	FBgn0283477	SF2	73	67.742	Drosophila_melanogaster
ENSXMAG00000010797	-	98	71.545	ENSEBUG00000009582	-	85	74.877	Eptatretus_burgeri
ENSXMAG00000010797	-	99	98.381	ENSFHEG00000017425	-	100	98.381	Fundulus_heteroclitus
ENSXMAG00000010797	-	75	86.096	ENSGMOG00000010606	-	97	86.096	Gadus_morhua
ENSXMAG00000010797	-	100	99.600	ENSGAFG00000000609	-	100	99.600	Gambusia_affinis
ENSXMAG00000010797	-	79	86.224	ENSGAFG00000012721	-	79	86.000	Gambusia_affinis
ENSXMAG00000010797	-	74	85.870	ENSGACG00000011094	-	96	85.870	Gasterosteus_aculeatus
ENSXMAG00000010797	-	51	60.156	ENSHBUG00000015600	-	93	59.690	Haplochromis_burtoni
ENSXMAG00000010797	-	93	93.191	ENSHBUG00000015576	-	82	90.291	Haplochromis_burtoni
ENSXMAG00000010797	-	80	81.095	ENSHCOG00000008016	-	79	80.882	Hippocampus_comes
ENSXMAG00000010797	-	98	81.855	ENSMFAG00000034223	-	66	85.572	Macaca_fascicularis
ENSXMAG00000010797	-	93	93.590	ENSMZEG00005019071	-	99	91.534	Maylandia_zebra
ENSXMAG00000010797	-	79	85.714	ENSMZEG00005007947	-	79	85.500	Maylandia_zebra
ENSXMAG00000010797	-	80	89.447	ENSMMOG00000018849	-	81	89.163	Mola_mola
ENSXMAG00000010797	-	79	85.714	ENSNBRG00000019981	-	79	85.500	Neolamprologus_brichardi
ENSXMAG00000010797	-	93	92.797	ENSNBRG00000008134	-	79	92.754	Neolamprologus_brichardi
ENSXMAG00000010797	-	68	64.497	ENSOPRG00000004745	-	96	64.497	Ochotona_princeps
ENSXMAG00000010797	-	80	93.627	ENSONIG00000004857	-	82	92.788	Oreochromis_niloticus
ENSXMAG00000010797	-	50	90.323	ENSOANG00000007320	-	55	94.382	Ornithorhynchus_anatinus
ENSXMAG00000010797	-	71	50.568	ENSOCUG00000026856	-	96	50.562	Oryctolagus_cuniculus
ENSXMAG00000010797	-	80	93.970	ENSORLG00000005314	-	100	91.732	Oryzias_latipes
ENSXMAG00000010797	-	80	93.970	ENSORLG00015015497	-	100	91.339	Oryzias_latipes_hsok
ENSXMAG00000010797	-	80	94.527	ENSOMEG00000017711	-	100	91.797	Oryzias_melastigma
ENSXMAG00000010797	-	90	70.000	ENSPLAG00000019613	-	71	85.870	Poecilia_latipinna
ENSXMAG00000010797	-	79	84.422	ENSPLAG00000019553	-	91	85.484	Poecilia_latipinna
ENSXMAG00000010797	-	100	99.598	ENSPREG00000016792	-	100	99.598	Poecilia_reticulata
ENSXMAG00000010797	-	93	92.797	ENSPNYG00000020651	-	93	91.633	Pundamilia_nyererei
ENSXMAG00000010797	-	79	85.714	ENSPNYG00000017115	-	79	85.500	Pundamilia_nyererei
ENSXMAG00000010797	-	84	87.619	ENSSFOG00015004989	-	72	87.562	Scleropages_formosus
ENSXMAG00000010797	-	99	81.154	ENSSDUG00000003887	-	81	87.736	Seriola_dumerili
ENSXMAG00000010797	-	80	84.422	ENSTRUG00000017058	-	82	84.729	Takifugu_rubripes
ENSXMAG00000010797	-	80	81.500	ENSTNIG00000009993	-	82	81.863	Tetraodon_nigroviridis
ENSXMAG00000010797	-	100	100.000	ENSXCOG00000017888	-	99	100.000	Xiphophorus_couchianus
ENSXMAG00000010797	-	79	84.422	ENSXCOG00000009643	-	79	85.714	Xiphophorus_couchianus