EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000011243 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 6608 bases
Position: chr7:11142617-11149224
Accession: 102224307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000011265	CMS1	PF14617.6	2.4e-31	1	1
ENSXMAP00000011265	DEAD	PF00270.29	2.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000011279	-	804	XM_023336803	ENSXMAP00000011265	267 (aa)	XP_023192571	M4A9X1

Gene Model

Click here to download ENSXMAG00000011243's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000011243's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000011243	cmss1	76	62.376	ENSG00000184220	CMSS1	98	65.000	Homo_sapiens
ENSXMAG00000011243	cmss1	76	84.236	ENSAPOG00000010604	cmss1	98	73.034	Acanthochromis_polyacanthus
ENSXMAG00000011243	cmss1	76	62.562	ENSAMEG00000004092	CMSS1	81	62.201	Ailuropoda_melanoleuca
ENSXMAG00000011243	cmss1	99	64.875	ENSACIG00000021854	cmss1	99	70.037	Amphilophus_citrinellus
ENSXMAG00000011243	cmss1	76	85.222	ENSAOCG00000013361	cmss1	92	75.093	Amphiprion_ocellaris
ENSXMAG00000011243	cmss1	76	85.222	ENSAPEG00000005829	cmss1	92	75.185	Amphiprion_percula
ENSXMAG00000011243	cmss1	96	72.763	ENSATEG00000008209	cmss1	93	71.375	Anabas_testudineus
ENSXMAG00000011243	cmss1	76	60.891	ENSAPLG00000010542	CMSS1	90	61.058	Anas_platyrhynchos
ENSXMAG00000011243	cmss1	76	62.871	ENSACAG00000011065	CMSS1	76	62.500	Anolis_carolinensis
ENSXMAG00000011243	cmss1	76	61.881	ENSANAG00000023565	CMSS1	79	61.538	Aotus_nancymaae
ENSXMAG00000011243	cmss1	99	75.926	ENSACLG00000027294	cmss1	91	76.296	Astatotilapia_calliptera
ENSXMAG00000011243	cmss1	75	63.500	ENSAMXG00000002046	cmss1	88	57.529	Astyanax_mexicanus
ENSXMAG00000011243	cmss1	76	63.366	ENSBTAG00000013663	CMSS1	75	63.462	Bos_taurus
ENSXMAG00000011243	cmss1	76	62.871	ENSCJAG00000000610	CMSS1	79	62.500	Callithrix_jacchus
ENSXMAG00000011243	cmss1	76	62.376	ENSCAFG00000009230	CMSS1	75	62.019	Canis_familiaris
ENSXMAG00000011243	cmss1	76	60.396	ENSCAFG00020024156	-	65	60.096	Canis_lupus_dingo
ENSXMAG00000011243	cmss1	76	62.376	ENSCAFG00020009464	-	76	62.019	Canis_lupus_dingo
ENSXMAG00000011243	cmss1	76	63.366	ENSCHIG00000013003	CMSS1	75	63.462	Capra_hircus
ENSXMAG00000011243	cmss1	76	62.871	ENSTSYG00000009266	CMSS1	80	62.981	Carlito_syrichta
ENSXMAG00000011243	cmss1	70	55.914	ENSCAPG00000013584	CMSS1	87	55.914	Cavia_aperea
ENSXMAG00000011243	cmss1	75	63.500	ENSCPOG00000014680	CMSS1	75	63.942	Cavia_porcellus
ENSXMAG00000011243	cmss1	76	62.376	ENSCCAG00000034685	CMSS1	79	62.019	Cebus_capucinus
ENSXMAG00000011243	cmss1	76	63.366	ENSCATG00000031980	CMSS1	80	62.981	Cercocebus_atys
ENSXMAG00000011243	cmss1	75	62.500	ENSCLAG00000011241	CMSS1	89	62.500	Chinchilla_lanigera
ENSXMAG00000011243	cmss1	76	63.366	ENSCSAG00000006024	CMSS1	85	62.981	Chlorocebus_sabaeus
ENSXMAG00000011243	cmss1	75	46.000	ENSCHOG00000012098	CMSS1	82	45.333	Choloepus_hoffmanni
ENSXMAG00000011243	cmss1	72	44.388	ENSCING00000014848	-	99	45.455	Ciona_intestinalis
ENSXMAG00000011243	cmss1	76	63.366	ENSCANG00000031337	CMSS1	80	62.981	Colobus_angolensis_palliatus
ENSXMAG00000011243	cmss1	76	61.386	ENSCGRG00001014305	Cmss1	74	61.650	Cricetulus_griseus_chok1gshd
ENSXMAG00000011243	cmss1	76	61.386	ENSCGRG00000006722	Cmss1	80	61.650	Cricetulus_griseus_crigri
ENSXMAG00000011243	cmss1	98	67.424	ENSCSEG00000004958	cmss1	91	67.286	Cynoglossus_semilaevis
ENSXMAG00000011243	cmss1	96	81.250	ENSCVAG00000005039	cmss1	93	80.150	Cyprinodon_variegatus
ENSXMAG00000011243	cmss1	76	67.488	ENSDARG00000112579	cmss1	71	67.308	Danio_rerio
ENSXMAG00000011243	cmss1	76	62.376	ENSDNOG00000040418	CMSS1	75	61.538	Dasypus_novemcinctus
ENSXMAG00000011243	cmss1	75	62.500	ENSDORG00000010461	Cmss1	75	62.500	Dipodomys_ordii
ENSXMAG00000011243	cmss1	75	62.000	ENSEASG00005010966	CMSS1	95	62.019	Equus_asinus_asinus
ENSXMAG00000011243	cmss1	75	61.500	ENSECAG00000015662	CMSS1	92	61.538	Equus_caballus
ENSXMAG00000011243	cmss1	75	44.500	ENSEEUG00000007624	-	75	44.712	Erinaceus_europaeus
ENSXMAG00000011243	cmss1	99	61.597	ENSELUG00000019459	cmss1	69	71.635	Esox_lucius
ENSXMAG00000011243	cmss1	75	63.500	ENSFCAG00000044577	CMSS1	75	63.462	Felis_catus
ENSXMAG00000011243	cmss1	76	60.396	ENSFALG00000005816	CMSS1	88	60.577	Ficedula_albicollis
ENSXMAG00000011243	cmss1	76	63.366	ENSFDAG00000012577	CMSS1	91	63.462	Fukomys_damarensis
ENSXMAG00000011243	cmss1	76	88.670	ENSFHEG00000012008	cmss1	86	88.462	Fundulus_heteroclitus
ENSXMAG00000011243	cmss1	76	74.384	ENSGMOG00000016729	cmss1	92	64.552	Gadus_morhua
ENSXMAG00000011243	cmss1	76	61.881	ENSGALG00000015267	CMSS1	80	62.019	Gallus_gallus
ENSXMAG00000011243	cmss1	100	91.011	ENSGAFG00000021217	cmss1	99	91.011	Gambusia_affinis
ENSXMAG00000011243	cmss1	76	76.355	ENSGACG00000002798	cmss1	90	68.340	Gasterosteus_aculeatus
ENSXMAG00000011243	cmss1	76	63.366	ENSGAGG00000019861	CMSS1	81	62.981	Gopherus_agassizii
ENSXMAG00000011243	cmss1	76	62.871	ENSGGOG00000014125	CMSS1	80	62.500	Gorilla_gorilla
ENSXMAG00000011243	cmss1	99	76.030	ENSHBUG00000008431	cmss1	94	76.208	Haplochromis_burtoni
ENSXMAG00000011243	cmss1	75	62.000	ENSHGLG00000019481	CMSS1	85	62.500	Heterocephalus_glaber_female
ENSXMAG00000011243	cmss1	75	62.000	ENSHGLG00100010314	CMSS1	84	62.500	Heterocephalus_glaber_male
ENSXMAG00000011243	cmss1	76	78.818	ENSHCOG00000003222	cmss1	71	78.846	Hippocampus_comes
ENSXMAG00000011243	cmss1	76	69.951	ENSIPUG00000011591	cmss1	90	61.364	Ictalurus_punctatus
ENSXMAG00000011243	cmss1	76	62.871	ENSSTOG00000019366	CMSS1	75	62.500	Ictidomys_tridecemlineatus
ENSXMAG00000011243	cmss1	76	62.871	ENSJJAG00000014894	Cmss1	91	62.745	Jaculus_jaculus
ENSXMAG00000011243	cmss1	100	65.672	ENSKMAG00000002390	cmss1	99	66.045	Kryptolebias_marmoratus
ENSXMAG00000011243	cmss1	76	76.961	ENSLBEG00000006298	cmss1	99	66.667	Labrus_bergylta
ENSXMAG00000011243	cmss1	76	62.871	ENSLACG00000009293	CMSS1	90	62.981	Latimeria_chalumnae
ENSXMAG00000011243	cmss1	76	60.396	ENSLOCG00000009391	cmss1	74	60.000	Lepisosteus_oculatus
ENSXMAG00000011243	cmss1	75	64.500	ENSLAFG00000017509	CMSS1	91	64.904	Loxodonta_africana
ENSXMAG00000011243	cmss1	76	62.871	ENSMFAG00000045006	CMSS1	80	62.500	Macaca_fascicularis
ENSXMAG00000011243	cmss1	76	62.376	ENSMMUG00000002939	CMSS1	88	62.626	Macaca_mulatta
ENSXMAG00000011243	cmss1	76	62.871	ENSMNEG00000031315	CMSS1	80	62.500	Macaca_nemestrina
ENSXMAG00000011243	cmss1	76	62.871	ENSMLEG00000033660	CMSS1	80	62.500	Mandrillus_leucophaeus
ENSXMAG00000011243	cmss1	99	73.308	ENSMAMG00000017176	cmss1	91	73.308	Mastacembelus_armatus
ENSXMAG00000011243	cmss1	99	75.926	ENSMZEG00005021886	cmss1	91	76.296	Maylandia_zebra
ENSXMAG00000011243	cmss1	76	61.881	ENSMGAG00000014360	CMSS1	91	62.019	Meleagris_gallopavo
ENSXMAG00000011243	cmss1	76	40.594	ENSMAUG00000020609	Cmss1	68	41.262	Mesocricetus_auratus
ENSXMAG00000011243	cmss1	75	64.000	ENSMICG00000048977	CMSS1	80	63.942	Microcebus_murinus
ENSXMAG00000011243	cmss1	76	62.376	ENSMOCG00000021937	Cmss1	75	62.136	Microtus_ochrogaster
ENSXMAG00000011243	cmss1	76	78.325	ENSMMOG00000019794	cmss1	86	78.365	Mola_mola
ENSXMAG00000011243	cmss1	76	64.356	ENSMODG00000002275	CMSS1	78	63.942	Monodelphis_domestica
ENSXMAG00000011243	cmss1	99	72.556	ENSMALG00000004250	cmss1	91	71.111	Monopterus_albus
ENSXMAG00000011243	cmss1	76	63.366	MGP_CAROLIEiJ_G0020824	Cmss1	75	63.592	Mus_caroli
ENSXMAG00000011243	cmss1	76	62.871	ENSMUSG00000022748	Cmss1	75	63.107	Mus_musculus
ENSXMAG00000011243	cmss1	76	62.376	MGP_PahariEiJ_G0016524	Cmss1	75	62.621	Mus_pahari
ENSXMAG00000011243	cmss1	76	62.871	MGP_SPRETEiJ_G0021724	Cmss1	75	63.107	Mus_spretus
ENSXMAG00000011243	cmss1	75	62.312	ENSMPUG00000011324	CMSS1	80	62.319	Mustela_putorius_furo
ENSXMAG00000011243	cmss1	75	62.376	ENSMLUG00000001131	CMSS1	80	62.381	Myotis_lucifugus
ENSXMAG00000011243	cmss1	76	61.386	ENSNGAG00000020316	Cmss1	75	61.058	Nannospalax_galili
ENSXMAG00000011243	cmss1	99	75.094	ENSNBRG00000003095	cmss1	91	75.926	Neolamprologus_brichardi
ENSXMAG00000011243	cmss1	75	63.000	ENSNLEG00000034172	CMSS1	80	62.981	Nomascus_leucogenys
ENSXMAG00000011243	cmss1	76	53.960	ENSMEUG00000014505	CMSS1	91	53.846	Notamacropus_eugenii
ENSXMAG00000011243	cmss1	76	63.366	ENSOPRG00000002986	CMSS1	75	62.981	Ochotona_princeps
ENSXMAG00000011243	cmss1	76	54.950	ENSODEG00000009446	-	81	55.288	Octodon_degus
ENSXMAG00000011243	cmss1	76	60.396	ENSODEG00000003558	-	77	60.096	Octodon_degus
ENSXMAG00000011243	cmss1	75	62.500	ENSODEG00000005226	-	74	63.107	Octodon_degus
ENSXMAG00000011243	cmss1	76	53.465	ENSODEG00000001853	-	73	53.365	Octodon_degus
ENSXMAG00000011243	cmss1	98	70.397	ENSONIG00000006678	cmss1	100	76.604	Oreochromis_niloticus
ENSXMAG00000011243	cmss1	78	61.538	ENSOANG00000007529	CMSS1	89	62.319	Ornithorhynchus_anatinus
ENSXMAG00000011243	cmss1	76	62.871	ENSOCUG00000025366	CMSS1	75	62.500	Oryctolagus_cuniculus
ENSXMAG00000011243	cmss1	98	73.946	ENSORLG00000020340	cmss1	92	71.852	Oryzias_latipes
ENSXMAG00000011243	cmss1	78	75.000	ENSORLG00020012235	cmss1	99	63.158	Oryzias_latipes_hni
ENSXMAG00000011243	cmss1	99	63.469	ENSORLG00015015551	cmss1	100	63.941	Oryzias_latipes_hsok
ENSXMAG00000011243	cmss1	99	73.384	ENSOMEG00000012555	cmss1	91	73.308	Oryzias_melastigma
ENSXMAG00000011243	cmss1	76	63.861	ENSOGAG00000002045	CMSS1	91	63.462	Otolemur_garnettii
ENSXMAG00000011243	cmss1	76	63.054	ENSOARG00000017899	CMSS1	72	63.158	Ovis_aries
ENSXMAG00000011243	cmss1	76	62.871	ENSPPAG00000038515	CMSS1	76	62.500	Pan_paniscus
ENSXMAG00000011243	cmss1	75	63.500	ENSPPRG00000016767	CMSS1	75	63.462	Panthera_pardus
ENSXMAG00000011243	cmss1	75	63.000	ENSPTIG00000018274	CMSS1	75	62.981	Panthera_tigris_altaica
ENSXMAG00000011243	cmss1	76	62.871	ENSPTRG00000015157	CMSS1	85	62.500	Pan_troglodytes
ENSXMAG00000011243	cmss1	76	63.366	ENSPANG00000019980	CMSS1	83	62.981	Papio_anubis
ENSXMAG00000011243	cmss1	99	61.132	ENSPKIG00000012609	cmss1	97	61.132	Paramormyrops_kingsleyae
ENSXMAG00000011243	cmss1	76	62.871	ENSPSIG00000003849	CMSS1	91	62.500	Pelodiscus_sinensis
ENSXMAG00000011243	cmss1	76	76.471	ENSPMGG00000010286	cmss1	90	76.555	Periophthalmus_magnuspinnatus
ENSXMAG00000011243	cmss1	76	61.386	ENSPEMG00000016384	Cmss1	74	61.650	Peromyscus_maniculatus_bairdii
ENSXMAG00000011243	cmss1	76	50.980	ENSPMAG00000001146	cmss1	100	50.980	Petromyzon_marinus
ENSXMAG00000011243	cmss1	76	62.871	ENSPCIG00000015656	CMSS1	79	62.500	Phascolarctos_cinereus
ENSXMAG00000011243	cmss1	98	79.783	ENSPFOG00000016849	cmss1	93	88.390	Poecilia_formosa
ENSXMAG00000011243	cmss1	98	79.422	ENSPLAG00000008323	cmss1	93	88.015	Poecilia_latipinna
ENSXMAG00000011243	cmss1	98	79.783	ENSPMEG00000021020	cmss1	93	88.390	Poecilia_mexicana
ENSXMAG00000011243	cmss1	98	86.973	ENSPREG00000007618	cmss1	91	86.891	Poecilia_reticulata
ENSXMAG00000011243	cmss1	76	64.356	ENSPPYG00000013606	CMSS1	76	63.942	Pongo_abelii
ENSXMAG00000011243	cmss1	75	63.500	ENSPCOG00000020035	CMSS1	80	63.462	Propithecus_coquereli
ENSXMAG00000011243	cmss1	75	51.500	ENSPVAG00000017031	CMSS1	75	51.923	Pteropus_vampyrus
ENSXMAG00000011243	cmss1	90	76.569	ENSPNYG00000013428	cmss1	88	75.820	Pundamilia_nyererei
ENSXMAG00000011243	cmss1	99	58.935	ENSPNAG00000007912	cmss1	71	67.788	Pygocentrus_nattereri
ENSXMAG00000011243	cmss1	76	62.871	ENSRNOG00000027888	Cmss1	80	63.107	Rattus_norvegicus
ENSXMAG00000011243	cmss1	76	62.871	ENSRBIG00000037931	CMSS1	80	62.500	Rhinopithecus_bieti
ENSXMAG00000011243	cmss1	76	62.871	ENSRROG00000042910	CMSS1	80	62.500	Rhinopithecus_roxellana
ENSXMAG00000011243	cmss1	76	62.871	ENSSBOG00000030980	CMSS1	79	62.500	Saimiri_boliviensis_boliviensis
ENSXMAG00000011243	cmss1	76	63.861	ENSSHAG00000009321	CMSS1	82	63.462	Sarcophilus_harrisii
ENSXMAG00000011243	cmss1	76	72.906	ENSSFOG00015001509	cmss1	72	73.077	Scleropages_formosus
ENSXMAG00000011243	cmss1	96	73.930	ENSSMAG00000001653	cmss1	92	72.491	Scophthalmus_maximus
ENSXMAG00000011243	cmss1	99	71.223	ENSSDUG00000007719	cmss1	93	75.465	Seriola_dumerili
ENSXMAG00000011243	cmss1	99	73.529	ENSSLDG00000012300	cmss1	93	74.638	Seriola_lalandi_dorsalis
ENSXMAG00000011243	cmss1	76	51.980	ENSSARG00000003584	CMSS1	74	51.923	Sorex_araneus
ENSXMAG00000011243	cmss1	76	60.891	ENSSPUG00000003865	CMSS1	92	60.577	Sphenodon_punctatus
ENSXMAG00000011243	cmss1	100	75.836	ENSSPAG00000019182	cmss1	80	75.836	Stegastes_partitus
ENSXMAG00000011243	cmss1	75	62.000	ENSSSCG00000011970	CMSS1	75	62.019	Sus_scrofa
ENSXMAG00000011243	cmss1	76	60.396	ENSTGUG00000013635	CMSS1	91	60.577	Taeniopygia_guttata
ENSXMAG00000011243	cmss1	76	78.325	ENSTRUG00000015265	cmss1	74	77.619	Takifugu_rubripes
ENSXMAG00000011243	cmss1	76	71.921	ENSTNIG00000002880	cmss1	76	71.429	Tetraodon_nigroviridis
ENSXMAG00000011243	cmss1	76	44.554	ENSTBEG00000016722	CMSS1	74	45.192	Tupaia_belangeri
ENSXMAG00000011243	cmss1	76	60.891	ENSTTRG00000001562	CMSS1	74	61.058	Tursiops_truncatus
ENSXMAG00000011243	cmss1	76	63.366	ENSUAMG00000024209	CMSS1	93	62.981	Ursus_americanus
ENSXMAG00000011243	cmss1	76	62.871	ENSUMAG00000001983	CMSS1	80	62.500	Ursus_maritimus
ENSXMAG00000011243	cmss1	60	61.250	ENSVPAG00000000263	CMSS1	57	61.250	Vicugna_pacos
ENSXMAG00000011243	cmss1	75	62.000	ENSVVUG00000021647	-	85	62.019	Vulpes_vulpes
ENSXMAG00000011243	cmss1	76	61.386	ENSVVUG00000007776	-	82	61.058	Vulpes_vulpes
ENSXMAG00000011243	cmss1	98	52.453	ENSXETG00000011858	cmss1	75	60.476	Xenopus_tropicalis
ENSXMAG00000011243	cmss1	100	99.625	ENSXCOG00000018724	cmss1	91	99.625	Xiphophorus_couchianus