EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000011469 (Gene tree)
Gene ID: 102228216
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 190367 bases
Position: chr17:3392456-3582822
Accession: 102228216
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000011564	TUDOR	PF00567.24	2.7e-26	1	1
ENSXMAP00000011564	SNase	PF00565.17	7.2e-68	1	4
ENSXMAP00000011564	SNase	PF00565.17	7.2e-68	2	4
ENSXMAP00000011564	SNase	PF00565.17	7.2e-68	3	4
ENSXMAP00000011564	SNase	PF00565.17	7.2e-68	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000011578	-	5290	XM_023350655	ENSXMAP00000011564	911 (aa)	XP_023206423	M4AAS0

Gene Model

Click here to download ENSXMAG00000011469's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000011469's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000011469	snd1	99	84.983	ENSG00000197157	SND1	100	84.101	Homo_sapiens
ENSXMAG00000011469	snd1	100	96.926	ENSAPOG00000017599	snd1	100	96.926	Acanthochromis_polyacanthus
ENSXMAG00000011469	snd1	100	84.136	ENSAMEG00000004664	SND1	94	84.136	Ailuropoda_melanoleuca
ENSXMAG00000011469	snd1	100	92.865	ENSACIG00000003551	snd1	100	92.865	Amphilophus_citrinellus
ENSXMAG00000011469	snd1	100	96.817	ENSAOCG00000014166	snd1	100	96.817	Amphiprion_ocellaris
ENSXMAG00000011469	snd1	100	96.597	ENSAPEG00000007067	snd1	100	96.597	Amphiprion_percula
ENSXMAG00000011469	snd1	98	95.973	ENSATEG00000018475	snd1	89	95.973	Anabas_testudineus
ENSXMAG00000011469	snd1	99	85.095	ENSANAG00000034463	SND1	99	85.214	Aotus_nancymaae
ENSXMAG00000011469	snd1	100	95.170	ENSACLG00000022897	snd1	100	95.170	Astatotilapia_calliptera
ENSXMAG00000011469	snd1	99	90.659	ENSAMXG00000016318	snd1	99	90.659	Astyanax_mexicanus
ENSXMAG00000011469	snd1	99	85.317	ENSBTAG00000010692	SND1	100	84.430	Bos_taurus
ENSXMAG00000011469	snd1	99	47.294	WBGene00006626	tsn-1	99	47.294	Caenorhabditis_elegans
ENSXMAG00000011469	snd1	99	84.872	ENSCJAG00000017668	SND1	100	83.991	Callithrix_jacchus
ENSXMAG00000011469	snd1	100	84.430	ENSCAFG00000001700	SND1	100	84.430	Canis_familiaris
ENSXMAG00000011469	snd1	100	84.430	ENSCAFG00020021639	SND1	100	84.430	Canis_lupus_dingo
ENSXMAG00000011469	snd1	99	85.206	ENSCHIG00000023390	SND1	100	84.320	Capra_hircus
ENSXMAG00000011469	snd1	70	87.895	ENSTSYG00000004979	SND1	96	87.895	Carlito_syrichta
ENSXMAG00000011469	snd1	97	74.887	ENSCAPG00000010677	SND1	97	74.247	Cavia_aperea
ENSXMAG00000011469	snd1	99	84.983	ENSCPOG00000006251	SND1	100	84.101	Cavia_porcellus
ENSXMAG00000011469	snd1	99	85.095	ENSCCAG00000036847	SND1	100	84.211	Cebus_capucinus
ENSXMAG00000011469	snd1	99	85.206	ENSCATG00000035214	SND1	99	85.327	Cercocebus_atys
ENSXMAG00000011469	snd1	99	85.206	ENSCLAG00000011796	SND1	100	84.320	Chinchilla_lanigera
ENSXMAG00000011469	snd1	99	85.206	ENSCSAG00000010182	SND1	100	84.320	Chlorocebus_sabaeus
ENSXMAG00000011469	snd1	77	76.238	ENSCHOG00000002218	SND1	86	76.238	Choloepus_hoffmanni
ENSXMAG00000011469	snd1	100	84.413	ENSCPBG00000018094	SND1	100	84.413	Chrysemys_picta_bellii
ENSXMAG00000011469	snd1	98	56.478	ENSCING00000000524	-	99	55.773	Ciona_intestinalis
ENSXMAG00000011469	snd1	99	56.878	ENSCSAVG00000008807	-	99	56.674	Ciona_savignyi
ENSXMAG00000011469	snd1	99	85.206	ENSCANG00000035119	SND1	100	84.320	Colobus_angolensis_palliatus
ENSXMAG00000011469	snd1	99	84.538	ENSCGRG00001022514	Snd1	98	85.738	Cricetulus_griseus_chok1gshd
ENSXMAG00000011469	snd1	97	84.650	ENSCGRG00000012277	Snd1	99	84.650	Cricetulus_griseus_crigri
ENSXMAG00000011469	snd1	100	94.292	ENSCSEG00000008661	snd1	100	94.292	Cynoglossus_semilaevis
ENSXMAG00000011469	snd1	100	97.695	ENSCVAG00000010316	snd1	100	97.695	Cyprinodon_variegatus
ENSXMAG00000011469	snd1	100	89.485	ENSDARG00000006766	snd1	99	91.005	Danio_rerio
ENSXMAG00000011469	snd1	97	83.240	ENSDNOG00000006795	SND1	100	83.240	Dasypus_novemcinctus
ENSXMAG00000011469	snd1	99	84.983	ENSDORG00000000336	Snd1	100	84.101	Dipodomys_ordii
ENSXMAG00000011469	snd1	98	50.379	FBgn0035121	Tudor-SN	99	49.946	Drosophila_melanogaster
ENSXMAG00000011469	snd1	90	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSXMAG00000011469	snd1	60	65.183	ENSEBUG00000014201	-	84	77.174	Eptatretus_burgeri
ENSXMAG00000011469	snd1	99	83.807	ENSEASG00005008513	SND1	100	82.956	Equus_asinus_asinus
ENSXMAG00000011469	snd1	99	84.983	ENSECAG00000011451	SND1	100	83.991	Equus_caballus
ENSXMAG00000011469	snd1	99	75.417	ENSEEUG00000014737	SND1	100	74.671	Erinaceus_europaeus
ENSXMAG00000011469	snd1	99	88.913	ENSELUG00000001805	snd1	96	88.913	Esox_lucius
ENSXMAG00000011469	snd1	100	84.320	ENSFCAG00000008289	SND1	100	84.320	Felis_catus
ENSXMAG00000011469	snd1	98	84.899	ENSFDAG00000015881	SND1	100	83.882	Fukomys_damarensis
ENSXMAG00000011469	snd1	100	95.166	ENSFHEG00000004093	snd1	99	96.815	Fundulus_heteroclitus
ENSXMAG00000011469	snd1	75	83.616	ENSGMOG00000018932	snd1	66	83.616	Gadus_morhua
ENSXMAG00000011469	snd1	100	99.232	ENSGAFG00000008421	snd1	100	99.232	Gambusia_affinis
ENSXMAG00000011469	snd1	100	61.388	ENSGACG00000019793	snd1	100	61.388	Gasterosteus_aculeatus
ENSXMAG00000011469	snd1	99	85.206	ENSGGOG00000009614	SND1	99	85.327	Gorilla_gorilla
ENSXMAG00000011469	snd1	100	95.060	ENSHBUG00000019135	snd1	100	95.060	Haplochromis_burtoni
ENSXMAG00000011469	snd1	99	84.761	ENSHGLG00000003618	SND1	98	85.906	Heterocephalus_glaber_female
ENSXMAG00000011469	snd1	99	84.761	ENSHGLG00100012449	SND1	99	84.761	Heterocephalus_glaber_male
ENSXMAG00000011469	snd1	100	92.865	ENSHCOG00000005266	snd1	100	92.865	Hippocampus_comes
ENSXMAG00000011469	snd1	99	88.913	ENSIPUG00000013279	snd1	99	88.913	Ictalurus_punctatus
ENSXMAG00000011469	snd1	99	85.095	ENSSTOG00000002140	SND1	100	84.211	Ictidomys_tridecemlineatus
ENSXMAG00000011469	snd1	99	85.095	ENSJJAG00000009561	Snd1	100	84.211	Jaculus_jaculus
ENSXMAG00000011469	snd1	100	97.585	ENSKMAG00000016997	snd1	100	97.585	Kryptolebias_marmoratus
ENSXMAG00000011469	snd1	100	94.512	ENSLBEG00000013563	snd1	100	94.512	Labrus_bergylta
ENSXMAG00000011469	snd1	99	88.975	ENSLOCG00000015537	snd1	99	88.248	Lepisosteus_oculatus
ENSXMAG00000011469	snd1	100	84.430	ENSLAFG00000009696	SND1	100	84.430	Loxodonta_africana
ENSXMAG00000011469	snd1	99	85.206	ENSMFAG00000038114	SND1	99	85.327	Macaca_fascicularis
ENSXMAG00000011469	snd1	99	85.206	ENSMMUG00000015432	SND1	100	84.320	Macaca_mulatta
ENSXMAG00000011469	snd1	99	85.206	ENSMNEG00000039808	SND1	100	85.344	Macaca_nemestrina
ENSXMAG00000011469	snd1	99	85.095	ENSMLEG00000029040	SND1	100	85.231	Mandrillus_leucophaeus
ENSXMAG00000011469	snd1	100	95.170	ENSMAMG00000011739	snd1	100	95.170	Mastacembelus_armatus
ENSXMAG00000011469	snd1	100	95.170	ENSMZEG00005005681	snd1	100	95.170	Maylandia_zebra
ENSXMAG00000011469	snd1	99	85.095	ENSMICG00000000097	SND1	100	84.211	Microcebus_murinus
ENSXMAG00000011469	snd1	99	85.095	ENSMOCG00000005040	Snd1	100	84.211	Microtus_ochrogaster
ENSXMAG00000011469	snd1	100	95.170	ENSMMOG00000001795	snd1	100	95.170	Mola_mola
ENSXMAG00000011469	snd1	99	84.427	ENSMODG00000015182	SND1	100	83.553	Monodelphis_domestica
ENSXMAG00000011469	snd1	100	95.719	ENSMALG00000012071	snd1	100	95.719	Monopterus_albus
ENSXMAG00000011469	snd1	98	84.787	MGP_CAROLIEiJ_G0028159	Snd1	99	85.714	Mus_caroli
ENSXMAG00000011469	snd1	98	84.564	ENSMUSG00000001424	Snd1	100	83.553	Mus_musculus
ENSXMAG00000011469	snd1	98	84.787	MGP_PahariEiJ_G0021917	Snd1	100	85.714	Mus_pahari
ENSXMAG00000011469	snd1	98	84.787	MGP_SPRETEiJ_G0029159	Snd1	100	83.772	Mus_spretus
ENSXMAG00000011469	snd1	100	84.320	ENSMPUG00000006545	SND1	100	83.882	Mustela_putorius_furo
ENSXMAG00000011469	snd1	97	84.058	ENSMLUG00000017130	SND1	99	83.389	Myotis_lucifugus
ENSXMAG00000011469	snd1	99	84.983	ENSNGAG00000011186	Snd1	100	84.101	Nannospalax_galili
ENSXMAG00000011469	snd1	100	95.170	ENSNBRG00000006681	snd1	100	95.170	Neolamprologus_brichardi
ENSXMAG00000011469	snd1	100	84.320	ENSNLEG00000012263	SND1	99	86.387	Nomascus_leucogenys
ENSXMAG00000011469	snd1	91	88.889	ENSOPRG00000013405	SND1	92	88.889	Ochotona_princeps
ENSXMAG00000011469	snd1	99	85.206	ENSODEG00000011502	SND1	99	85.206	Octodon_degus
ENSXMAG00000011469	snd1	100	95.280	ENSONIG00000011481	snd1	97	95.280	Oreochromis_niloticus
ENSXMAG00000011469	snd1	98	84.270	ENSOANG00000000817	SND1	99	82.967	Ornithorhynchus_anatinus
ENSXMAG00000011469	snd1	99	83.626	ENSOCUG00000001620	SND1	99	83.626	Oryctolagus_cuniculus
ENSXMAG00000011469	snd1	100	94.512	ENSORLG00000015201	snd1	100	94.512	Oryzias_latipes
ENSXMAG00000011469	snd1	100	94.731	ENSORLG00020013991	snd1	100	94.731	Oryzias_latipes_hni
ENSXMAG00000011469	snd1	100	94.731	ENSORLG00015012436	snd1	100	94.731	Oryzias_latipes_hsok
ENSXMAG00000011469	snd1	100	94.951	ENSOMEG00000006406	snd1	100	94.951	Oryzias_melastigma
ENSXMAG00000011469	snd1	99	85.017	ENSOGAG00000013356	SND1	94	84.136	Otolemur_garnettii
ENSXMAG00000011469	snd1	97	82.976	ENSOARG00000002149	SND1	100	82.976	Ovis_aries
ENSXMAG00000011469	snd1	99	85.095	ENSPPAG00000042947	SND1	99	85.214	Pan_paniscus
ENSXMAG00000011469	snd1	100	84.320	ENSPPRG00000004494	SND1	100	84.320	Panthera_pardus
ENSXMAG00000011469	snd1	100	84.211	ENSPTIG00000014214	SND1	100	84.211	Panthera_tigris_altaica
ENSXMAG00000011469	snd1	99	85.095	ENSPTRG00000023911	SND1	99	85.214	Pan_troglodytes
ENSXMAG00000011469	snd1	97	85.327	ENSPANG00000011997	SND1	99	85.327	Papio_anubis
ENSXMAG00000011469	snd1	99	86.770	ENSPKIG00000023494	snd1	99	86.260	Paramormyrops_kingsleyae
ENSXMAG00000011469	snd1	92	94.378	ENSPMGG00000003629	snd1	100	94.378	Periophthalmus_magnuspinnatus
ENSXMAG00000011469	snd1	99	84.872	ENSPEMG00000010240	Snd1	100	83.991	Peromyscus_maniculatus_bairdii
ENSXMAG00000011469	snd1	97	74.379	ENSPMAG00000007915	-	99	74.266	Petromyzon_marinus
ENSXMAG00000011469	snd1	99	84.983	ENSPCIG00000011561	SND1	100	84.101	Phascolarctos_cinereus
ENSXMAG00000011469	snd1	100	98.793	ENSPFOG00000001557	snd1	100	98.793	Poecilia_formosa
ENSXMAG00000011469	snd1	100	98.793	ENSPLAG00000018459	snd1	97	98.793	Poecilia_latipinna
ENSXMAG00000011469	snd1	100	99.012	ENSPMEG00000006803	snd1	100	99.012	Poecilia_mexicana
ENSXMAG00000011469	snd1	100	98.793	ENSPREG00000002189	snd1	100	98.793	Poecilia_reticulata
ENSXMAG00000011469	snd1	91	88.889	ENSPPYG00000017972	SND1	100	88.889	Pongo_abelii
ENSXMAG00000011469	snd1	99	74.972	ENSPCAG00000011305	SND1	100	74.232	Procavia_capensis
ENSXMAG00000011469	snd1	99	85.206	ENSPCOG00000026791	SND1	100	85.344	Propithecus_coquereli
ENSXMAG00000011469	snd1	99	82.981	ENSPVAG00000013945	SND1	100	82.127	Pteropus_vampyrus
ENSXMAG00000011469	snd1	100	95.060	ENSPNYG00000000932	snd1	100	95.060	Pundamilia_nyererei
ENSXMAG00000011469	snd1	99	90.989	ENSPNAG00000001206	snd1	99	90.989	Pygocentrus_nattereri
ENSXMAG00000011469	snd1	98	84.676	ENSRNOG00000031173	Snd1	100	83.766	Rattus_norvegicus
ENSXMAG00000011469	snd1	70	88.577	ENSRBIG00000027782	-	93	88.636	Rhinopithecus_bieti
ENSXMAG00000011469	snd1	99	85.206	ENSRROG00000033020	SND1	100	84.320	Rhinopithecus_roxellana
ENSXMAG00000011469	snd1	99	84.983	ENSSBOG00000032461	SND1	99	85.102	Saimiri_boliviensis_boliviensis
ENSXMAG00000011469	snd1	98	81.573	ENSSHAG00000015359	SND1	100	81.573	Sarcophilus_harrisii
ENSXMAG00000011469	snd1	98	88.803	ENSSFOG00015001103	snd1	99	88.017	Scleropages_formosus
ENSXMAG00000011469	snd1	100	94.951	ENSSMAG00000001932	snd1	95	94.951	Scophthalmus_maximus
ENSXMAG00000011469	snd1	100	96.597	ENSSDUG00000002699	snd1	94	96.597	Seriola_dumerili
ENSXMAG00000011469	snd1	100	88.913	ENSSLDG00000001950	snd1	100	88.913	Seriola_lalandi_dorsalis
ENSXMAG00000011469	snd1	86	80.854	ENSSARG00000004877	SND1	92	80.854	Sorex_araneus
ENSXMAG00000011469	snd1	71	80.442	ENSSPUG00000017586	SND1	97	80.442	Sphenodon_punctatus
ENSXMAG00000011469	snd1	73	95.601	ENSSPAG00000021398	snd1	99	95.601	Stegastes_partitus
ENSXMAG00000011469	snd1	99	84.872	ENSSSCG00000016590	SND1	100	83.991	Sus_scrofa
ENSXMAG00000011469	snd1	100	94.128	ENSTRUG00000014067	snd1	100	92.865	Takifugu_rubripes
ENSXMAG00000011469	snd1	100	93.414	ENSTNIG00000011019	snd1	100	93.414	Tetraodon_nigroviridis
ENSXMAG00000011469	snd1	93	79.529	ENSTBEG00000003999	SND1	100	79.529	Tupaia_belangeri
ENSXMAG00000011469	snd1	99	80.756	ENSTTRG00000006059	SND1	100	79.934	Tursiops_truncatus
ENSXMAG00000011469	snd1	87	84.030	ENSUAMG00000005604	-	93	84.030	Ursus_americanus
ENSXMAG00000011469	snd1	69	77.546	ENSUAMG00000002820	-	89	77.546	Ursus_americanus
ENSXMAG00000011469	snd1	100	84.211	ENSUMAG00000005960	SND1	100	84.211	Ursus_maritimus
ENSXMAG00000011469	snd1	77	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSXMAG00000011469	snd1	100	84.320	ENSVVUG00000007226	SND1	100	84.320	Vulpes_vulpes
ENSXMAG00000011469	snd1	97	80.271	ENSXETG00000023043	snd1	100	80.137	Xenopus_tropicalis
ENSXMAG00000011469	snd1	92	96.675	ENSXCOG00000013629	snd1	99	96.675	Xiphophorus_couchianus