EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000012091 (Gene tree)
Gene ID: 102227914
Gene Symbol: si:ch73-63e15.2
Alias: si:dkey-19f23.4
Full Name: strawberry notch homolog 2
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 71631 bases
Position: chr9:20505936-20577566
Accession: 102227914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000036682	ResIII	PF04851.15	1.7e-08	1	1
ENSXMAP00000031435	ResIII	PF04851.15	1.8e-08	1	1
ENSXMAP00000034240	ResIII	PF04851.15	1.9e-08	1	1
ENSXMAP00000025474	ResIII	PF04851.15	2e-08	1	1
ENSXMAP00000029397	ResIII	PF04851.15	2e-08	1	1
ENSXMAP00000012140	ResIII	PF04851.15	3.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000027348	-	8560	XM_005795698	ENSXMAP00000025474	1571 (aa)	XP_005795755	UPI0003B38B0F
ENSXMAT00000012156	-	3789	-	ENSXMAP00000012140	1262 (aa)	-	M4ACE6
ENSXMAT00000036150	-	8655	-	ENSXMAP00000029397	1571 (aa)	-	UPI0003B38B0F
ENSXMAT00000035394	-	8574	XM_023339242	ENSXMAP00000034240	1544 (aa)	XP_023195010	UPI000C6D2F3C
ENSXMAT00000027133	-	8412	XM_023339244	ENSXMAP00000036682	1487 (aa)	XP_023195012	UPI000C6EF067
ENSXMAT00000033591	-	8324	-	ENSXMAP00000031435	1494 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000012091's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000012091's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000012091	si:ch73-63e15.2	83	71.053	ENSG00000064932	SBNO2	88	67.579	Homo_sapiens
ENSXMAG00000012091	si:ch73-63e15.2	91	90.274	ENSAPOG00000003185	si:ch73-63e15.2	93	86.993	Acanthochromis_polyacanthus
ENSXMAG00000012091	si:ch73-63e15.2	91	91.935	ENSAOCG00000016581	si:ch73-63e15.2	92	93.031	Amphiprion_ocellaris
ENSXMAG00000012091	si:ch73-63e15.2	91	91.935	ENSAPEG00000008862	si:ch73-63e15.2	100	80.674	Amphiprion_percula
ENSXMAG00000012091	si:ch73-63e15.2	91	89.587	ENSATEG00000023838	si:ch73-63e15.2	99	85.462	Anabas_testudineus
ENSXMAG00000012091	si:ch73-63e15.2	86	71.300	ENSAPLG00000007158	SBNO2	89	72.097	Anas_platyrhynchos
ENSXMAG00000012091	si:ch73-63e15.2	81	70.797	ENSANAG00000026685	SBNO2	89	66.952	Aotus_nancymaae
ENSXMAG00000012091	si:ch73-63e15.2	89	88.605	ENSACLG00000005090	si:ch73-63e15.2	100	76.278	Astatotilapia_calliptera
ENSXMAG00000012091	si:ch73-63e15.2	82	83.958	ENSAMXG00000018868	sbno2a	96	79.979	Astyanax_mexicanus
ENSXMAG00000012091	si:ch73-63e15.2	83	83.716	ENSAMXG00000015881	si:ch73-63e15.2	85	80.802	Astyanax_mexicanus
ENSXMAG00000012091	si:ch73-63e15.2	87	69.003	ENSBTAG00000020780	SBNO2	88	69.520	Bos_taurus
ENSXMAG00000012091	si:ch73-63e15.2	81	72.334	ENSCAFG00000019543	SBNO2	90	66.507	Canis_familiaris
ENSXMAG00000012091	si:ch73-63e15.2	81	72.334	ENSCAFG00020017115	SBNO2	95	66.507	Canis_lupus_dingo
ENSXMAG00000012091	si:ch73-63e15.2	87	69.031	ENSCHIG00000026127	SBNO2	90	66.212	Capra_hircus
ENSXMAG00000012091	si:ch73-63e15.2	80	69.380	ENSCAPG00000005731	SBNO2	94	66.493	Cavia_aperea
ENSXMAG00000012091	si:ch73-63e15.2	81	69.327	ENSCPOG00000007477	SBNO2	87	66.438	Cavia_porcellus
ENSXMAG00000012091	si:ch73-63e15.2	81	70.701	ENSCCAG00000037518	SBNO2	89	66.895	Cebus_capucinus
ENSXMAG00000012091	si:ch73-63e15.2	83	71.362	ENSCATG00000037046	SBNO2	87	68.559	Cercocebus_atys
ENSXMAG00000012091	si:ch73-63e15.2	81	71.869	ENSCLAG00000010178	SBNO2	99	68.701	Chinchilla_lanigera
ENSXMAG00000012091	si:ch73-63e15.2	81	71.593	ENSCSAG00000012317	SBNO2	90	65.403	Chlorocebus_sabaeus
ENSXMAG00000012091	si:ch73-63e15.2	90	67.684	ENSCPBG00000008920	SBNO2	78	84.634	Chrysemys_picta_bellii
ENSXMAG00000012091	si:ch73-63e15.2	78	71.161	ENSCANG00000036745	SBNO2	95	68.248	Colobus_angolensis_palliatus
ENSXMAG00000012091	si:ch73-63e15.2	81	69.394	ENSCGRG00001023960	Sbno2	85	67.219	Cricetulus_griseus_chok1gshd
ENSXMAG00000012091	si:ch73-63e15.2	81	70.865	ENSCGRG00000011984	Sbno2	85	68.554	Cricetulus_griseus_crigri
ENSXMAG00000012091	si:ch73-63e15.2	87	88.326	ENSCSEG00000006856	si:ch73-63e15.2	96	88.349	Cynoglossus_semilaevis
ENSXMAG00000012091	si:ch73-63e15.2	100	84.238	ENSCVAG00000005663	si:ch73-63e15.2	100	84.381	Cyprinodon_variegatus
ENSXMAG00000012091	si:ch73-63e15.2	84	82.281	ENSDARG00000098801	sbno2a	93	74.708	Danio_rerio
ENSXMAG00000012091	si:ch73-63e15.2	99	68.688	ENSDARG00000016188	SBNO2	87	78.318	Danio_rerio
ENSXMAG00000012091	si:ch73-63e15.2	81	71.538	ENSDORG00000002916	Sbno2	90	65.944	Dipodomys_ordii
ENSXMAG00000012091	si:ch73-63e15.2	81	72.115	ENSEASG00005021621	SBNO2	89	69.606	Equus_asinus_asinus
ENSXMAG00000012091	si:ch73-63e15.2	81	72.019	ENSECAG00000011827	SBNO2	89	69.692	Equus_caballus
ENSXMAG00000012091	si:ch73-63e15.2	92	83.767	ENSELUG00000020457	si:ch73-63e15.2	99	72.364	Esox_lucius
ENSXMAG00000012091	si:ch73-63e15.2	81	74.283	ENSFALG00000013988	SBNO2	86	70.767	Ficedula_albicollis
ENSXMAG00000012091	si:ch73-63e15.2	81	68.511	ENSFDAG00000015186	SBNO2	88	65.837	Fukomys_damarensis
ENSXMAG00000012091	si:ch73-63e15.2	100	85.139	ENSFHEG00000022262	si:ch73-63e15.2	100	85.561	Fundulus_heteroclitus
ENSXMAG00000012091	si:ch73-63e15.2	84	88.068	ENSGMOG00000007542	si:ch73-63e15.2	95	85.977	Gadus_morhua
ENSXMAG00000012091	si:ch73-63e15.2	86	71.889	ENSGALG00000037522	SBNO2	89	69.021	Gallus_gallus
ENSXMAG00000012091	si:ch73-63e15.2	87	99.342	ENSGAFG00000004860	si:ch73-63e15.2	93	99.314	Gambusia_affinis
ENSXMAG00000012091	si:ch73-63e15.2	84	90.458	ENSGACG00000013190	si:ch73-63e15.2	96	88.256	Gasterosteus_aculeatus
ENSXMAG00000012091	si:ch73-63e15.2	85	73.175	ENSGAGG00000008348	SBNO2	89	70.310	Gopherus_agassizii
ENSXMAG00000012091	si:ch73-63e15.2	89	88.605	ENSHBUG00000010742	si:ch73-63e15.2	100	76.743	Haplochromis_burtoni
ENSXMAG00000012091	si:ch73-63e15.2	81	71.607	ENSHGLG00000008739	SBNO2	85	68.448	Heterocephalus_glaber_female
ENSXMAG00000012091	si:ch73-63e15.2	81	71.620	ENSHGLG00100005269	SBNO2	99	68.576	Heterocephalus_glaber_male
ENSXMAG00000012091	si:ch73-63e15.2	87	88.828	ENSHCOG00000000884	si:ch73-63e15.2	97	80.757	Hippocampus_comes
ENSXMAG00000012091	si:ch73-63e15.2	85	83.719	ENSIPUG00000019672	sbno2	99	76.782	Ictalurus_punctatus
ENSXMAG00000012091	si:ch73-63e15.2	86	80.731	ENSIPUG00000000537	si:ch73-63e15.2	87	78.279	Ictalurus_punctatus
ENSXMAG00000012091	si:ch73-63e15.2	80	71.787	ENSSTOG00000025832	SBNO2	88	67.276	Ictidomys_tridecemlineatus
ENSXMAG00000012091	si:ch73-63e15.2	81	68.396	ENSJJAG00000017397	Sbno2	91	63.468	Jaculus_jaculus
ENSXMAG00000012091	si:ch73-63e15.2	92	89.422	ENSKMAG00000005541	si:ch73-63e15.2	100	78.991	Kryptolebias_marmoratus
ENSXMAG00000012091	si:ch73-63e15.2	86	90.467	ENSLBEG00000025016	si:ch73-63e15.2	99	88.665	Labrus_bergylta
ENSXMAG00000012091	si:ch73-63e15.2	85	85.341	ENSLOCG00000004643	si:ch73-63e15.2	85	83.290	Lepisosteus_oculatus
ENSXMAG00000012091	si:ch73-63e15.2	81	68.138	ENSLAFG00000008824	SBNO2	89	65.429	Loxodonta_africana
ENSXMAG00000012091	si:ch73-63e15.2	81	70.949	ENSMFAG00000040030	SBNO2	90	66.410	Macaca_fascicularis
ENSXMAG00000012091	si:ch73-63e15.2	81	71.593	ENSMMUG00000010886	SBNO2	90	65.403	Macaca_mulatta
ENSXMAG00000012091	si:ch73-63e15.2	81	71.689	ENSMNEG00000039927	SBNO2	87	68.646	Macaca_nemestrina
ENSXMAG00000012091	si:ch73-63e15.2	74	72.479	ENSMLEG00000038556	SBNO2	97	65.108	Mandrillus_leucophaeus
ENSXMAG00000012091	si:ch73-63e15.2	91	89.937	ENSMAMG00000018758	si:ch73-63e15.2	100	76.504	Mastacembelus_armatus
ENSXMAG00000012091	si:ch73-63e15.2	89	88.605	ENSMZEG00005010682	si:ch73-63e15.2	100	76.278	Maylandia_zebra
ENSXMAG00000012091	si:ch73-63e15.2	81	75.024	ENSMGAG00000003801	SBNO2	90	71.574	Meleagris_gallopavo
ENSXMAG00000012091	si:ch73-63e15.2	80	71.498	ENSMAUG00000008034	Sbno2	88	66.860	Mesocricetus_auratus
ENSXMAG00000012091	si:ch73-63e15.2	81	71.250	ENSMICG00000013071	SBNO2	88	68.527	Microcebus_murinus
ENSXMAG00000012091	si:ch73-63e15.2	80	71.167	ENSMOCG00000010504	Sbno2	88	66.611	Microtus_ochrogaster
ENSXMAG00000012091	si:ch73-63e15.2	81	73.996	ENSMODG00000005382	SBNO2	89	66.957	Monodelphis_domestica
ENSXMAG00000012091	si:ch73-63e15.2	73	80.253	ENSMALG00000021831	si:ch73-63e15.2	99	81.943	Monopterus_albus
ENSXMAG00000012091	si:ch73-63e15.2	81	70.481	ENSMUSG00000035673	Sbno2	97	66.250	Mus_musculus
ENSXMAG00000012091	si:ch73-63e15.2	81	70.481	MGP_PahariEiJ_G0030976	Sbno2	88	66.500	Mus_pahari
ENSXMAG00000012091	si:ch73-63e15.2	81	70.673	MGP_SPRETEiJ_G0016381	Sbno2	94	66.333	Mus_spretus
ENSXMAG00000012091	si:ch73-63e15.2	68	74.858	ENSMPUG00000008747	SBNO2	95	69.364	Mustela_putorius_furo
ENSXMAG00000012091	si:ch73-63e15.2	81	70.701	ENSNGAG00000004308	Sbno2	90	65.862	Nannospalax_galili
ENSXMAG00000012091	si:ch73-63e15.2	92	83.319	ENSNBRG00000022968	si:ch73-63e15.2	99	89.030	Neolamprologus_brichardi
ENSXMAG00000012091	si:ch73-63e15.2	74	69.504	ENSNLEG00000001305	SBNO2	89	69.504	Nomascus_leucogenys
ENSXMAG00000012091	si:ch73-63e15.2	73	66.490	ENSMEUG00000013511	-	78	66.490	Notamacropus_eugenii
ENSXMAG00000012091	si:ch73-63e15.2	81	71.154	ENSOPRG00000017238	SBNO2	94	69.014	Ochotona_princeps
ENSXMAG00000012091	si:ch73-63e15.2	81	70.934	ENSODEG00000011822	SBNO2	89	65.705	Octodon_degus
ENSXMAG00000012091	si:ch73-63e15.2	89	89.152	ENSONIG00000002490	si:ch73-63e15.2	95	87.205	Oreochromis_niloticus
ENSXMAG00000012091	si:ch73-63e15.2	91	88.011	ENSORLG00000000913	si:ch73-63e15.2	100	76.697	Oryzias_latipes
ENSXMAG00000012091	si:ch73-63e15.2	91	87.922	ENSORLG00020010978	si:ch73-63e15.2	100	76.567	Oryzias_latipes_hni
ENSXMAG00000012091	si:ch73-63e15.2	91	87.922	ENSORLG00015000202	si:ch73-63e15.2	100	76.893	Oryzias_latipes_hsok
ENSXMAG00000012091	si:ch73-63e15.2	93	87.040	ENSOMEG00000000359	si:ch73-63e15.2	100	76.400	Oryzias_melastigma
ENSXMAG00000012091	si:ch73-63e15.2	84	67.933	ENSOARG00000011130	SBNO2	93	63.739	Ovis_aries
ENSXMAG00000012091	si:ch73-63e15.2	83	69.926	ENSPPAG00000032482	SBNO2	90	66.582	Pan_paniscus
ENSXMAG00000012091	si:ch73-63e15.2	83	70.959	ENSPTRG00000010185	SBNO2	88	67.873	Pan_troglodytes
ENSXMAG00000012091	si:ch73-63e15.2	83	67.606	ENSPANG00000009658	SBNO2	88	64.072	Papio_anubis
ENSXMAG00000012091	si:ch73-63e15.2	86	73.754	ENSPKIG00000009707	-	93	73.754	Paramormyrops_kingsleyae
ENSXMAG00000012091	si:ch73-63e15.2	91	84.178	ENSPKIG00000024201	si:ch73-63e15.2	85	83.191	Paramormyrops_kingsleyae
ENSXMAG00000012091	si:ch73-63e15.2	69	75.751	ENSPSIG00000002852	SBNO2	99	73.428	Pelodiscus_sinensis
ENSXMAG00000012091	si:ch73-63e15.2	94	79.773	ENSPMGG00000014375	si:ch73-63e15.2	96	80.502	Periophthalmus_magnuspinnatus
ENSXMAG00000012091	si:ch73-63e15.2	81	69.595	ENSPEMG00000024122	Sbno2	88	65.017	Peromyscus_maniculatus_bairdii
ENSXMAG00000012091	si:ch73-63e15.2	81	73.996	ENSPCIG00000011264	SBNO2	89	68.075	Phascolarctos_cinereus
ENSXMAG00000012091	si:ch73-63e15.2	100	96.213	ENSPFOG00000004096	si:ch73-63e15.2	100	96.207	Poecilia_formosa
ENSXMAG00000012091	si:ch73-63e15.2	100	96.061	ENSPLAG00000014653	si:ch73-63e15.2	100	95.794	Poecilia_latipinna
ENSXMAG00000012091	si:ch73-63e15.2	100	96.388	ENSPMEG00000002129	si:ch73-63e15.2	100	96.388	Poecilia_mexicana
ENSXMAG00000012091	si:ch73-63e15.2	100	96.667	ENSPREG00000006755	si:ch73-63e15.2	100	96.639	Poecilia_reticulata
ENSXMAG00000012091	si:ch73-63e15.2	81	69.045	ENSPCAG00000012256	SBNO2	77	69.045	Procavia_capensis
ENSXMAG00000012091	si:ch73-63e15.2	81	64.847	ENSPCOG00000015216	SBNO2	88	62.436	Propithecus_coquereli
ENSXMAG00000012091	si:ch73-63e15.2	89	88.605	ENSPNYG00000019926	si:ch73-63e15.2	100	76.678	Pundamilia_nyererei
ENSXMAG00000012091	si:ch73-63e15.2	84	83.396	ENSPNAG00000026609	sbno2a	99	70.097	Pygocentrus_nattereri
ENSXMAG00000012091	si:ch73-63e15.2	83	83.065	ENSPNAG00000020260	si:ch73-63e15.2	85	81.640	Pygocentrus_nattereri
ENSXMAG00000012091	si:ch73-63e15.2	81	70.865	ENSRNOG00000013987	Sbno2	89	68.739	Rattus_norvegicus
ENSXMAG00000012091	si:ch73-63e15.2	76	70.378	ENSRBIG00000009740	SBNO2	86	68.034	Rhinopithecus_bieti
ENSXMAG00000012091	si:ch73-63e15.2	70	76.056	ENSRROG00000044671	SBNO2	85	71.218	Rhinopithecus_roxellana
ENSXMAG00000012091	si:ch73-63e15.2	81	70.797	ENSSBOG00000023562	SBNO2	89	67.151	Saimiri_boliviensis_boliviensis
ENSXMAG00000012091	si:ch73-63e15.2	81	73.926	ENSSHAG00000010241	SBNO2	98	70.470	Sarcophilus_harrisii
ENSXMAG00000012091	si:ch73-63e15.2	91	80.069	ENSSFOG00015005861	si:ch73-63e15.2	95	81.595	Scleropages_formosus
ENSXMAG00000012091	si:ch73-63e15.2	91	89.876	ENSSMAG00000012489	si:ch73-63e15.2	100	77.891	Scophthalmus_maximus
ENSXMAG00000012091	si:ch73-63e15.2	91	90.493	ENSSDUG00000003527	si:ch73-63e15.2	100	77.955	Seriola_dumerili
ENSXMAG00000012091	si:ch73-63e15.2	91	90.404	ENSSLDG00000004623	si:ch73-63e15.2	100	77.764	Seriola_lalandi_dorsalis
ENSXMAG00000012091	si:ch73-63e15.2	88	91.390	ENSSPAG00000017717	si:ch73-63e15.2	100	80.013	Stegastes_partitus
ENSXMAG00000012091	si:ch73-63e15.2	81	71.854	ENSSSCG00000030042	SBNO2	90	68.515	Sus_scrofa
ENSXMAG00000012091	si:ch73-63e15.2	81	90.829	ENSTRUG00000018193	si:ch73-63e15.2	86	88.381	Takifugu_rubripes
ENSXMAG00000012091	si:ch73-63e15.2	72	75.165	ENSUAMG00000006568	SBNO2	93	71.247	Ursus_americanus
ENSXMAG00000012091	si:ch73-63e15.2	81	72.334	ENSVVUG00000022823	SBNO2	89	66.507	Vulpes_vulpes
ENSXMAG00000012091	si:ch73-63e15.2	81	76.566	ENSXETG00000021579	sbno2	91	76.566	Xenopus_tropicalis
ENSXMAG00000012091	si:ch73-63e15.2	88	97.561	ENSXCOG00000009209	si:ch73-63e15.2	94	97.561	Xiphophorus_couchianus