EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000012218 (Gene tree)
Gene ID: 102217946
Gene Symbol: alyref
Alias: tho4|thoc4|zgc:171753
Full Name: THO complex subunit 4-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 3668 bases
Position: chr16:16580290-16583957
Accession: 102217946
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000012237	RRM_1	PF00076.22	1.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000012253	-	819	XM_005807020	ENSXMAP00000012237	272 (aa)	XP_005807077	M4ACP3

Gene Model

Click here to download ENSXMAG00000012218's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG
xma03015	mRNA surveillance pathway	KEGG
xma03040	Spliceosome	KEGG
xma05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000012218's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000012218	alyref	98	52.574	ENSAPOG00000000183	-	98	48.084	Acanthochromis_polyacanthus
ENSXMAG00000012218	alyref	98	78.755	ENSACIG00000006351	alyref	99	77.419	Amphilophus_citrinellus
ENSXMAG00000012218	alyref	99	47.157	ENSACIG00000020351	-	100	49.658	Amphilophus_citrinellus
ENSXMAG00000012218	alyref	98	52.416	ENSAOCG00000019305	-	98	52.809	Amphiprion_ocellaris
ENSXMAG00000012218	alyref	99	77.899	ENSAOCG00000014012	alyref	99	83.883	Amphiprion_ocellaris
ENSXMAG00000012218	alyref	98	53.532	ENSAPEG00000013527	-	98	52.809	Amphiprion_percula
ENSXMAG00000012218	alyref	98	79.121	ENSAPEG00000014603	alyref	99	83.883	Amphiprion_percula
ENSXMAG00000012218	alyref	97	55.357	ENSATEG00000000382	-	97	56.089	Anabas_testudineus
ENSXMAG00000012218	alyref	99	75.000	ENSATEG00000004307	alyref	99	78.339	Anabas_testudineus
ENSXMAG00000012218	alyref	98	52.500	ENSACLG00000010184	-	98	52.650	Astatotilapia_calliptera
ENSXMAG00000012218	alyref	99	74.368	ENSACLG00000008432	alyref	99	82.847	Astatotilapia_calliptera
ENSXMAG00000012218	alyref	99	69.892	ENSAMXG00000007359	alyref	99	74.007	Astyanax_mexicanus
ENSXMAG00000012218	alyref	72	52.792	ENSCING00000013568	-	98	44.245	Ciona_intestinalis
ENSXMAG00000012218	alyref	98	48.148	ENSCSAVG00000003324	-	98	46.067	Ciona_savignyi
ENSXMAG00000012218	alyref	99	75.812	ENSCSEG00000017800	alyref	99	80.292	Cynoglossus_semilaevis
ENSXMAG00000012218	alyref	99	80.952	ENSCVAG00000014869	alyref	99	84.815	Cyprinodon_variegatus
ENSXMAG00000012218	alyref	98	48.689	ENSCVAG00000007789	-	98	45.756	Cyprinodon_variegatus
ENSXMAG00000012218	alyref	99	76.071	ENSDARG00000077732	alyref	99	75.090	Danio_rerio
ENSXMAG00000012218	alyref	96	44.681	FBgn0010774	Ref1	65	49.724	Drosophila_melanogaster
ENSXMAG00000012218	alyref	69	45.596	ENSEBUG00000006305	alyref	99	38.768	Eptatretus_burgeri
ENSXMAG00000012218	alyref	98	53.558	ENSEBUG00000008253	alyref	95	51.661	Eptatretus_burgeri
ENSXMAG00000012218	alyref	99	76.557	ENSELUG00000017178	alyref	100	71.062	Esox_lucius
ENSXMAG00000012218	alyref	99	64.311	ENSELUG00000008849	-	100	63.604	Esox_lucius
ENSXMAG00000012218	alyref	57	75.776	ENSFALG00000011923	-	96	75.974	Ficedula_albicollis
ENSXMAG00000012218	alyref	99	82.593	ENSFHEG00000019426	alyref	99	80.524	Fundulus_heteroclitus
ENSXMAG00000012218	alyref	98	47.566	ENSFHEG00000004698	-	98	47.584	Fundulus_heteroclitus
ENSXMAG00000012218	alyref	67	54.726	ENSGMOG00000013122	-	100	56.853	Gadus_morhua
ENSXMAG00000012218	alyref	99	68.978	ENSGMOG00000009882	alyref	99	66.421	Gadus_morhua
ENSXMAG00000012218	alyref	97	49.813	ENSGAFG00000007573	-	97	46.816	Gambusia_affinis
ENSXMAG00000012218	alyref	99	98.141	ENSGAFG00000006014	alyref	100	98.141	Gambusia_affinis
ENSXMAG00000012218	alyref	98	54.610	ENSHBUG00000001454	-	98	52.797	Haplochromis_burtoni
ENSXMAG00000012218	alyref	99	74.368	ENSHBUG00000020196	alyref	99	82.847	Haplochromis_burtoni
ENSXMAG00000012218	alyref	99	46.528	ENSHCOG00000012825	-	96	47.122	Hippocampus_comes
ENSXMAG00000012218	alyref	99	72.464	ENSIPUG00000009469	alyref	99	73.993	Ictalurus_punctatus
ENSXMAG00000012218	alyref	72	64.796	ENSSTOG00000016570	-	91	65.574	Ictidomys_tridecemlineatus
ENSXMAG00000012218	alyref	98	52.045	ENSKMAG00000006462	-	97	51.880	Kryptolebias_marmoratus
ENSXMAG00000012218	alyref	99	76.449	ENSKMAG00000008912	alyref	99	79.121	Kryptolebias_marmoratus
ENSXMAG00000012218	alyref	98	45.230	ENSLBEG00000012930	-	99	49.104	Labrus_bergylta
ENSXMAG00000012218	alyref	99	82.545	ENSLBEG00000023118	alyref	90	85.455	Labrus_bergylta
ENSXMAG00000012218	alyref	99	46.233	ENSLBEG00000005387	-	99	47.423	Labrus_bergylta
ENSXMAG00000012218	alyref	75	68.519	ENSLOCG00000013879	alyref	88	66.981	Lepisosteus_oculatus
ENSXMAG00000012218	alyref	99	77.617	ENSMAMG00000003034	alyref	99	79.927	Mastacembelus_armatus
ENSXMAG00000012218	alyref	98	49.470	ENSMAMG00000005464	-	98	49.815	Mastacembelus_armatus
ENSXMAG00000012218	alyref	98	52.143	ENSMZEG00005012096	-	98	52.297	Maylandia_zebra
ENSXMAG00000012218	alyref	99	74.368	ENSMZEG00005008639	alyref	99	82.847	Maylandia_zebra
ENSXMAG00000012218	alyref	99	84.727	ENSMMOG00000012458	alyref	98	83.636	Mola_mola
ENSXMAG00000012218	alyref	98	46.043	ENSMMOG00000007032	-	98	45.745	Mola_mola
ENSXMAG00000012218	alyref	98	50.690	ENSMALG00000006054	-	98	48.443	Monopterus_albus
ENSXMAG00000012218	alyref	97	54.874	ENSMLUG00000028605	-	98	53.357	Myotis_lucifugus
ENSXMAG00000012218	alyref	97	54.610	ENSMLUG00000014372	-	98	55.678	Myotis_lucifugus
ENSXMAG00000012218	alyref	99	55.197	ENSMLUG00000004098	-	98	54.380	Myotis_lucifugus
ENSXMAG00000012218	alyref	97	56.727	ENSMLUG00000030671	-	98	52.857	Myotis_lucifugus
ENSXMAG00000012218	alyref	97	56.777	ENSMLUG00000022178	-	98	55.019	Myotis_lucifugus
ENSXMAG00000012218	alyref	99	53.737	ENSMLUG00000006521	-	98	54.745	Myotis_lucifugus
ENSXMAG00000012218	alyref	97	53.047	ENSMLUG00000009247	-	98	50.182	Myotis_lucifugus
ENSXMAG00000012218	alyref	97	55.000	ENSMLUG00000022467	-	98	51.613	Myotis_lucifugus
ENSXMAG00000012218	alyref	99	64.207	ENSNGAG00000022014	-	99	62.687	Nannospalax_galili
ENSXMAG00000012218	alyref	99	74.729	ENSNBRG00000001747	alyref	99	82.482	Neolamprologus_brichardi
ENSXMAG00000012218	alyref	99	52.482	ENSNBRG00000017460	-	99	53.191	Neolamprologus_brichardi
ENSXMAG00000012218	alyref	98	56.204	ENSONIG00000003296	-	98	55.556	Oreochromis_niloticus
ENSXMAG00000012218	alyref	99	76.786	ENSONIG00000019434	alyref	99	81.588	Oreochromis_niloticus
ENSXMAG00000012218	alyref	100	39.752	ENSORLG00000001620	-	60	46.460	Oryzias_latipes
ENSXMAG00000012218	alyref	99	80.882	ENSORLG00020011942	alyref	99	84.758	Oryzias_latipes_hni
ENSXMAG00000012218	alyref	99	47.653	ENSORLG00020015673	-	98	47.122	Oryzias_latipes_hni
ENSXMAG00000012218	alyref	99	83.456	ENSORLG00015022664	alyref	99	84.387	Oryzias_latipes_hsok
ENSXMAG00000012218	alyref	99	47.500	ENSORLG00015015143	-	98	48.201	Oryzias_latipes_hsok
ENSXMAG00000012218	alyref	99	81.181	ENSOMEG00000019176	alyref	99	86.940	Oryzias_melastigma
ENSXMAG00000012218	alyref	98	51.866	ENSOMEG00000007158	-	98	48.148	Oryzias_melastigma
ENSXMAG00000012218	alyref	67	76.216	ENSPPAG00000036403	-	68	74.054	Pan_paniscus
ENSXMAG00000012218	alyref	99	73.626	ENSPKIG00000007070	alyref	99	68.727	Paramormyrops_kingsleyae
ENSXMAG00000012218	alyref	99	73.626	ENSPKIG00000006233	-	81	67.518	Paramormyrops_kingsleyae
ENSXMAG00000012218	alyref	73	47.739	ENSPMGG00000012994	-	70	57.258	Periophthalmus_magnuspinnatus
ENSXMAG00000012218	alyref	98	73.432	ENSPMGG00000016600	alyref	92	75.090	Periophthalmus_magnuspinnatus
ENSXMAG00000012218	alyref	99	60.595	ENSPEMG00000016628	-	99	60.223	Peromyscus_maniculatus_bairdii
ENSXMAG00000012218	alyref	99	96.310	ENSPFOG00000022825	alyref	99	96.310	Poecilia_formosa
ENSXMAG00000012218	alyref	98	47.794	ENSPFOG00000017094	-	98	46.642	Poecilia_formosa
ENSXMAG00000012218	alyref	99	96.667	ENSPLAG00000006948	alyref	100	96.667	Poecilia_latipinna
ENSXMAG00000012218	alyref	98	47.794	ENSPLAG00000014380	-	98	46.642	Poecilia_latipinna
ENSXMAG00000012218	alyref	98	47.794	ENSPMEG00000023039	-	98	46.642	Poecilia_mexicana
ENSXMAG00000012218	alyref	99	97.070	ENSPMEG00000003547	alyref	100	96.310	Poecilia_mexicana
ENSXMAG00000012218	alyref	99	48.529	ENSPREG00000003649	-	99	47.388	Poecilia_reticulata
ENSXMAG00000012218	alyref	99	97.037	ENSPREG00000015795	alyref	100	97.037	Poecilia_reticulata
ENSXMAG00000012218	alyref	98	51.264	ENSPNYG00000002879	-	98	51.601	Pundamilia_nyererei
ENSXMAG00000012218	alyref	99	74.368	ENSPNYG00000017498	alyref	99	82.847	Pundamilia_nyererei
ENSXMAG00000012218	alyref	99	72.924	ENSPNAG00000002531	alyref	99	71.168	Pygocentrus_nattereri
ENSXMAG00000012218	alyref	71	71.795	ENSSBOG00000030924	-	85	71.204	Saimiri_boliviensis_boliviensis
ENSXMAG00000012218	alyref	98	53.846	ENSSHAG00000012866	-	77	58.824	Sarcophilus_harrisii
ENSXMAG00000012218	alyref	98	54.945	ENSSHAG00000000609	-	99	51.449	Sarcophilus_harrisii
ENSXMAG00000012218	alyref	67	76.630	ENSSFOG00015003678	alyref	83	73.913	Scleropages_formosus
ENSXMAG00000012218	alyref	75	77.295	ENSSFOG00015003923	alyref	72	77.561	Scleropages_formosus
ENSXMAG00000012218	alyref	98	75.735	ENSSMAG00000009283	alyref	99	79.779	Scophthalmus_maximus
ENSXMAG00000012218	alyref	97	50.538	ENSSMAG00000011169	-	100	55.172	Scophthalmus_maximus
ENSXMAG00000012218	alyref	99	77.536	ENSSDUG00000016158	alyref	99	82.784	Seriola_dumerili
ENSXMAG00000012218	alyref	99	77.256	ENSSLDG00000017803	alyref	99	82.482	Seriola_lalandi_dorsalis
ENSXMAG00000012218	alyref	99	53.069	ENSSPAG00000017028	-	98	52.708	Stegastes_partitus
ENSXMAG00000012218	alyref	99	48.084	ENSTRUG00000003051	-	99	46.643	Takifugu_rubripes
ENSXMAG00000012218	alyref	99	48.718	ENSTNIG00000014136	-	99	45.185	Tetraodon_nigroviridis
ENSXMAG00000012218	alyref	99	73.741	ENSTNIG00000011595	alyref	99	73.091	Tetraodon_nigroviridis
ENSXMAG00000012218	alyref	68	74.074	ENSVVUG00000000272	-	81	73.514	Vulpes_vulpes
ENSXMAG00000012218	alyref	100	99.632	ENSXCOG00000018047	alyref	100	99.632	Xiphophorus_couchianus
ENSXMAG00000012218	alyref	98	49.248	ENSXMAG00000018086	-	99	47.388	Xiphophorus_maculatus