EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000012755 (Gene tree)
Gene ID: 102224496
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 3585 bases
Position: chr22:17275447-17279031
Accession: 102224496
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000012780	SMN	PF06003.12	2.6e-16	1	1
ENSXMAP00000036217	SMN	PF06003.12	2.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000027513	-	1232	-	ENSXMAP00000036217	238 (aa)	-	UPI0002939D6A
ENSXMAT00000012796	-	952	XM_005804885	ENSXMAP00000012780	238 (aa)	XP_005804942	M4AE86

Gene Model

Click here to download ENSXMAG00000012755's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000012755's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000012755	smndc1	100	74.790	ENSG00000119953	SMNDC1	100	74.790	Homo_sapiens
ENSXMAG00000012755	smndc1	100	90.756	ENSAPOG00000021772	smndc1	100	90.756	Acanthochromis_polyacanthus
ENSXMAG00000012755	smndc1	100	74.790	ENSAMEG00000005251	SMNDC1	100	74.790	Ailuropoda_melanoleuca
ENSXMAG00000012755	smndc1	100	90.336	ENSACIG00000004819	smndc1	100	90.336	Amphilophus_citrinellus
ENSXMAG00000012755	smndc1	100	89.496	ENSAOCG00000017869	smndc1	100	89.496	Amphiprion_ocellaris
ENSXMAG00000012755	smndc1	100	89.496	ENSAPEG00000007752	smndc1	100	89.496	Amphiprion_percula
ENSXMAG00000012755	smndc1	100	92.017	ENSATEG00000006830	smndc1	100	92.017	Anabas_testudineus
ENSXMAG00000012755	smndc1	83	75.253	ENSAPLG00000004322	SMNDC1	100	75.253	Anas_platyrhynchos
ENSXMAG00000012755	smndc1	100	76.050	ENSACAG00000005983	SMNDC1	100	76.050	Anolis_carolinensis
ENSXMAG00000012755	smndc1	100	74.790	ENSANAG00000032875	SMNDC1	100	74.790	Aotus_nancymaae
ENSXMAG00000012755	smndc1	100	89.076	ENSACLG00000016360	smndc1	100	89.076	Astatotilapia_calliptera
ENSXMAG00000012755	smndc1	100	79.412	ENSAMXG00000020310	smndc1	100	79.412	Astyanax_mexicanus
ENSXMAG00000012755	smndc1	100	74.790	ENSBTAG00000000551	SMNDC1	100	74.790	Bos_taurus
ENSXMAG00000012755	smndc1	100	74.790	ENSCJAG00000018624	SMNDC1	100	74.790	Callithrix_jacchus
ENSXMAG00000012755	smndc1	100	74.790	ENSCAFG00000010720	SMNDC1	100	74.790	Canis_familiaris
ENSXMAG00000012755	smndc1	100	74.790	ENSCAFG00020011913	SMNDC1	100	74.790	Canis_lupus_dingo
ENSXMAG00000012755	smndc1	100	74.790	ENSCHIG00000010604	SMNDC1	100	74.790	Capra_hircus
ENSXMAG00000012755	smndc1	100	74.790	ENSTSYG00000026454	SMNDC1	100	74.790	Carlito_syrichta
ENSXMAG00000012755	smndc1	100	61.250	ENSCAPG00000009132	SMNDC1	100	71.144	Cavia_aperea
ENSXMAG00000012755	smndc1	100	74.790	ENSCPOG00000031666	SMNDC1	100	74.790	Cavia_porcellus
ENSXMAG00000012755	smndc1	100	74.790	ENSCCAG00000021793	SMNDC1	100	74.790	Cebus_capucinus
ENSXMAG00000012755	smndc1	100	74.370	ENSCATG00000035910	SMNDC1	100	74.370	Cercocebus_atys
ENSXMAG00000012755	smndc1	100	74.790	ENSCLAG00000002838	SMNDC1	100	74.790	Chinchilla_lanigera
ENSXMAG00000012755	smndc1	100	74.790	ENSCSAG00000005169	SMNDC1	100	74.790	Chlorocebus_sabaeus
ENSXMAG00000012755	smndc1	81	69.948	ENSCHOG00000002936	SMNDC1	100	69.948	Choloepus_hoffmanni
ENSXMAG00000012755	smndc1	100	75.210	ENSCPBG00000012837	SMNDC1	100	75.210	Chrysemys_picta_bellii
ENSXMAG00000012755	smndc1	100	68.487	ENSCANG00000034620	-	100	68.487	Colobus_angolensis_palliatus
ENSXMAG00000012755	smndc1	100	74.790	ENSCANG00000031720	-	100	74.790	Colobus_angolensis_palliatus
ENSXMAG00000012755	smndc1	100	57.983	ENSCANG00000036994	-	100	57.983	Colobus_angolensis_palliatus
ENSXMAG00000012755	smndc1	100	74.370	ENSCGRG00001012973	Smndc1	100	74.370	Cricetulus_griseus_chok1gshd
ENSXMAG00000012755	smndc1	100	74.370	ENSCGRG00000012396	Smndc1	100	74.370	Cricetulus_griseus_crigri
ENSXMAG00000012755	smndc1	100	85.294	ENSCSEG00000015621	smndc1	100	85.294	Cynoglossus_semilaevis
ENSXMAG00000012755	smndc1	100	92.857	ENSCVAG00000020432	smndc1	100	92.857	Cyprinodon_variegatus
ENSXMAG00000012755	smndc1	100	82.845	ENSDARG00000056235	smndc1	100	82.845	Danio_rerio
ENSXMAG00000012755	smndc1	100	74.790	ENSDNOG00000016387	SMNDC1	83	74.790	Dasypus_novemcinctus
ENSXMAG00000012755	smndc1	100	74.790	ENSDORG00000023715	Smndc1	100	74.790	Dipodomys_ordii
ENSXMAG00000012755	smndc1	95	40.964	FBgn0039977	CG17454	98	42.570	Drosophila_melanogaster
ENSXMAG00000012755	smndc1	100	66.805	ENSEBUG00000010929	smndc1	100	68.880	Eptatretus_burgeri
ENSXMAG00000012755	smndc1	100	74.790	ENSEASG00005014930	SMNDC1	100	74.790	Equus_asinus_asinus
ENSXMAG00000012755	smndc1	100	74.790	ENSECAG00000029973	SMNDC1	100	74.790	Equus_caballus
ENSXMAG00000012755	smndc1	83	54.040	ENSEEUG00000013407	-	100	54.040	Erinaceus_europaeus
ENSXMAG00000012755	smndc1	100	82.353	ENSELUG00000000227	smndc1	100	82.353	Esox_lucius
ENSXMAG00000012755	smndc1	100	74.790	ENSFCAG00000027353	SMNDC1	100	74.790	Felis_catus
ENSXMAG00000012755	smndc1	100	76.471	ENSFALG00000002306	SMNDC1	100	76.471	Ficedula_albicollis
ENSXMAG00000012755	smndc1	100	74.790	ENSFDAG00000006468	SMNDC1	100	74.790	Fukomys_damarensis
ENSXMAG00000012755	smndc1	100	93.697	ENSFHEG00000020150	smndc1	100	93.697	Fundulus_heteroclitus
ENSXMAG00000012755	smndc1	100	81.933	ENSGMOG00000016585	smndc1	100	81.933	Gadus_morhua
ENSXMAG00000012755	smndc1	100	76.471	ENSGALG00000008561	SMNDC1	100	76.471	Gallus_gallus
ENSXMAG00000012755	smndc1	100	96.639	ENSGAFG00000011582	smndc1	100	96.639	Gambusia_affinis
ENSXMAG00000012755	smndc1	100	87.395	ENSGACG00000009468	smndc1	100	87.395	Gasterosteus_aculeatus
ENSXMAG00000012755	smndc1	100	75.210	ENSGAGG00000024547	SMNDC1	100	75.210	Gopherus_agassizii
ENSXMAG00000012755	smndc1	100	74.790	ENSGGOG00000010071	SMNDC1	100	74.790	Gorilla_gorilla
ENSXMAG00000012755	smndc1	100	89.076	ENSHBUG00000017596	smndc1	100	89.076	Haplochromis_burtoni
ENSXMAG00000012755	smndc1	100	74.790	ENSHGLG00000013390	-	100	74.790	Heterocephalus_glaber_female
ENSXMAG00000012755	smndc1	100	56.098	ENSHGLG00000001157	-	100	53.878	Heterocephalus_glaber_female
ENSXMAG00000012755	smndc1	100	60.656	ENSHGLG00100004278	-	100	59.438	Heterocephalus_glaber_male
ENSXMAG00000012755	smndc1	100	74.790	ENSHGLG00100004814	-	100	74.790	Heterocephalus_glaber_male
ENSXMAG00000012755	smndc1	100	84.519	ENSHCOG00000000783	smndc1	100	84.519	Hippocampus_comes
ENSXMAG00000012755	smndc1	100	81.092	ENSIPUG00000004217	smndc1	100	81.092	Ictalurus_punctatus
ENSXMAG00000012755	smndc1	100	74.790	ENSSTOG00000006088	SMNDC1	100	74.790	Ictidomys_tridecemlineatus
ENSXMAG00000012755	smndc1	100	74.790	ENSJJAG00000019974	Smndc1	100	74.790	Jaculus_jaculus
ENSXMAG00000012755	smndc1	100	90.756	ENSKMAG00000020134	smndc1	100	90.756	Kryptolebias_marmoratus
ENSXMAG00000012755	smndc1	100	89.076	ENSLBEG00000004598	smndc1	100	89.076	Labrus_bergylta
ENSXMAG00000012755	smndc1	100	73.529	ENSLACG00000007784	SMNDC1	100	73.529	Latimeria_chalumnae
ENSXMAG00000012755	smndc1	100	81.513	ENSLOCG00000012355	smndc1	100	81.513	Lepisosteus_oculatus
ENSXMAG00000012755	smndc1	100	74.370	ENSLAFG00000014353	SMNDC1	100	74.370	Loxodonta_africana
ENSXMAG00000012755	smndc1	100	62.185	ENSMFAG00000038381	-	100	62.185	Macaca_fascicularis
ENSXMAG00000012755	smndc1	100	74.790	ENSMFAG00000002433	-	100	74.790	Macaca_fascicularis
ENSXMAG00000012755	smndc1	100	74.790	ENSMMUG00000007775	SMNDC1	100	74.790	Macaca_mulatta
ENSXMAG00000012755	smndc1	100	62.185	ENSMMUG00000045875	-	100	62.185	Macaca_mulatta
ENSXMAG00000012755	smndc1	100	74.790	ENSMNEG00000042963	-	100	74.790	Macaca_nemestrina
ENSXMAG00000012755	smndc1	100	65.546	ENSMNEG00000033853	-	100	65.546	Macaca_nemestrina
ENSXMAG00000012755	smndc1	100	70.293	ENSMLEG00000040236	SMNDC1	100	69.874	Mandrillus_leucophaeus
ENSXMAG00000012755	smndc1	89	86.854	ENSMAMG00000018233	smndc1	87	86.854	Mastacembelus_armatus
ENSXMAG00000012755	smndc1	100	89.076	ENSMZEG00005027510	smndc1	100	89.076	Maylandia_zebra
ENSXMAG00000012755	smndc1	99	67.511	ENSMGAG00000010777	SMNDC1	99	67.511	Meleagris_gallopavo
ENSXMAG00000012755	smndc1	100	74.790	ENSMAUG00000012243	-	100	74.790	Mesocricetus_auratus
ENSXMAG00000012755	smndc1	99	61.181	ENSMAUG00000005459	-	93	61.181	Mesocricetus_auratus
ENSXMAG00000012755	smndc1	100	74.370	ENSMICG00000027336	-	100	74.370	Microcebus_murinus
ENSXMAG00000012755	smndc1	100	65.126	ENSMICG00000031640	-	100	65.126	Microcebus_murinus
ENSXMAG00000012755	smndc1	100	74.370	ENSMOCG00000002458	Smndc1	100	74.370	Microtus_ochrogaster
ENSXMAG00000012755	smndc1	100	87.395	ENSMMOG00000008856	smndc1	100	87.395	Mola_mola
ENSXMAG00000012755	smndc1	100	74.790	ENSMODG00000010542	SMNDC1	100	74.790	Monodelphis_domestica
ENSXMAG00000012755	smndc1	100	87.815	ENSMALG00000017598	smndc1	100	87.815	Monopterus_albus
ENSXMAG00000012755	smndc1	100	74.790	MGP_CAROLIEiJ_G0023072	Smndc1	100	74.790	Mus_caroli
ENSXMAG00000012755	smndc1	100	74.790	ENSMUSG00000025024	Smndc1	100	74.790	Mus_musculus
ENSXMAG00000012755	smndc1	100	74.790	MGP_PahariEiJ_G0014560	Smndc1	100	74.790	Mus_pahari
ENSXMAG00000012755	smndc1	100	74.790	MGP_SPRETEiJ_G0023993	Smndc1	100	74.790	Mus_spretus
ENSXMAG00000012755	smndc1	100	74.790	ENSMPUG00000002089	SMNDC1	100	74.790	Mustela_putorius_furo
ENSXMAG00000012755	smndc1	100	74.790	ENSMLUG00000016007	SMNDC1	100	74.790	Myotis_lucifugus
ENSXMAG00000012755	smndc1	100	75.210	ENSNGAG00000006833	Smndc1	100	75.210	Nannospalax_galili
ENSXMAG00000012755	smndc1	100	89.496	ENSNBRG00000017089	smndc1	100	89.496	Neolamprologus_brichardi
ENSXMAG00000012755	smndc1	100	74.790	ENSNLEG00000015471	SMNDC1	100	74.790	Nomascus_leucogenys
ENSXMAG00000012755	smndc1	70	57.485	ENSMEUG00000010120	-	98	53.535	Notamacropus_eugenii
ENSXMAG00000012755	smndc1	100	74.790	ENSOPRG00000015348	SMNDC1	100	74.790	Ochotona_princeps
ENSXMAG00000012755	smndc1	100	54.812	ENSODEG00000007594	-	100	52.720	Octodon_degus
ENSXMAG00000012755	smndc1	100	89.496	ENSONIG00000000434	smndc1	100	89.496	Oreochromis_niloticus
ENSXMAG00000012755	smndc1	100	75.210	ENSOANG00000001598	SMNDC1	100	75.210	Ornithorhynchus_anatinus
ENSXMAG00000012755	smndc1	100	74.370	ENSOCUG00000008145	-	100	74.370	Oryctolagus_cuniculus
ENSXMAG00000012755	smndc1	100	55.042	ENSOCUG00000012274	-	100	56.723	Oryctolagus_cuniculus
ENSXMAG00000012755	smndc1	100	82.773	ENSORLG00000005934	smndc1	95	82.773	Oryzias_latipes
ENSXMAG00000012755	smndc1	100	82.773	ENSORLG00020008796	smndc1	95	82.773	Oryzias_latipes_hni
ENSXMAG00000012755	smndc1	100	82.773	ENSORLG00015013666	smndc1	100	82.773	Oryzias_latipes_hsok
ENSXMAG00000012755	smndc1	100	82.773	ENSOMEG00000007590	smndc1	100	82.773	Oryzias_melastigma
ENSXMAG00000012755	smndc1	100	74.790	ENSOGAG00000000571	SMNDC1	100	74.790	Otolemur_garnettii
ENSXMAG00000012755	smndc1	100	74.790	ENSOARG00000009500	SMNDC1	100	74.790	Ovis_aries
ENSXMAG00000012755	smndc1	100	74.790	ENSPPAG00000027815	SMNDC1	100	74.790	Pan_paniscus
ENSXMAG00000012755	smndc1	100	74.790	ENSPPRG00000013749	SMNDC1	100	74.790	Panthera_pardus
ENSXMAG00000012755	smndc1	100	74.790	ENSPTIG00000011451	SMNDC1	100	74.790	Panthera_tigris_altaica
ENSXMAG00000012755	smndc1	100	74.790	ENSPTRG00000002937	SMNDC1	100	74.790	Pan_troglodytes
ENSXMAG00000012755	smndc1	100	74.790	ENSPANG00000020805	-	100	74.790	Papio_anubis
ENSXMAG00000012755	smndc1	100	70.588	ENSPANG00000031346	-	100	70.588	Papio_anubis
ENSXMAG00000012755	smndc1	100	79.832	ENSPKIG00000017164	smndc1	100	79.832	Paramormyrops_kingsleyae
ENSXMAG00000012755	smndc1	100	75.210	ENSPSIG00000012257	SMNDC1	100	75.210	Pelodiscus_sinensis
ENSXMAG00000012755	smndc1	100	82.353	ENSPMGG00000015651	smndc1	100	82.353	Periophthalmus_magnuspinnatus
ENSXMAG00000012755	smndc1	100	74.790	ENSPEMG00000022058	Smndc1	100	74.790	Peromyscus_maniculatus_bairdii
ENSXMAG00000012755	smndc1	100	66.255	ENSPMAG00000007705	smndc1	100	66.255	Petromyzon_marinus
ENSXMAG00000012755	smndc1	95	57.269	ENSPCIG00000009693	-	98	57.269	Phascolarctos_cinereus
ENSXMAG00000012755	smndc1	100	74.790	ENSPCIG00000018419	SMNDC1	100	74.790	Phascolarctos_cinereus
ENSXMAG00000012755	smndc1	100	96.639	ENSPFOG00000017113	smndc1	100	96.639	Poecilia_formosa
ENSXMAG00000012755	smndc1	100	96.218	ENSPLAG00000010372	smndc1	100	96.218	Poecilia_latipinna
ENSXMAG00000012755	smndc1	100	96.218	ENSPMEG00000012288	smndc1	100	96.218	Poecilia_mexicana
ENSXMAG00000012755	smndc1	100	95.798	ENSPREG00000012279	smndc1	100	95.798	Poecilia_reticulata
ENSXMAG00000012755	smndc1	100	74.790	ENSPPYG00000002643	SMNDC1	100	74.790	Pongo_abelii
ENSXMAG00000012755	smndc1	81	69.948	ENSPCAG00000016183	SMNDC1	100	69.948	Procavia_capensis
ENSXMAG00000012755	smndc1	100	74.370	ENSPCOG00000024343	SMNDC1	100	74.370	Propithecus_coquereli
ENSXMAG00000012755	smndc1	100	59.664	ENSPVAG00000004368	SMNDC1	100	59.664	Pteropus_vampyrus
ENSXMAG00000012755	smndc1	83	87.374	ENSPNYG00000024093	smndc1	86	87.374	Pundamilia_nyererei
ENSXMAG00000012755	smndc1	100	78.571	ENSPNAG00000025285	smndc1	100	78.571	Pygocentrus_nattereri
ENSXMAG00000012755	smndc1	100	74.790	ENSRNOG00000014833	Smndc1	100	74.790	Rattus_norvegicus
ENSXMAG00000012755	smndc1	100	74.370	ENSRBIG00000000224	-	100	74.370	Rhinopithecus_bieti
ENSXMAG00000012755	smndc1	100	61.345	ENSRBIG00000032452	-	100	61.345	Rhinopithecus_bieti
ENSXMAG00000012755	smndc1	100	74.790	ENSRROG00000044992	-	100	74.790	Rhinopithecus_roxellana
ENSXMAG00000012755	smndc1	100	61.345	ENSRROG00000039125	-	100	61.345	Rhinopithecus_roxellana
ENSXMAG00000012755	smndc1	100	74.790	ENSSBOG00000026789	SMNDC1	100	74.790	Saimiri_boliviensis_boliviensis
ENSXMAG00000012755	smndc1	100	74.790	ENSSHAG00000015189	SMNDC1	100	74.790	Sarcophilus_harrisii
ENSXMAG00000012755	smndc1	100	79.412	ENSSFOG00015008311	smndc1	100	79.412	Scleropages_formosus
ENSXMAG00000012755	smndc1	100	90.756	ENSSMAG00000020118	smndc1	100	90.756	Scophthalmus_maximus
ENSXMAG00000012755	smndc1	100	89.916	ENSSDUG00000015330	smndc1	100	89.916	Seriola_dumerili
ENSXMAG00000012755	smndc1	100	89.496	ENSSLDG00000017325	smndc1	100	89.496	Seriola_lalandi_dorsalis
ENSXMAG00000012755	smndc1	100	74.790	ENSSARG00000006063	SMNDC1	100	74.790	Sorex_araneus
ENSXMAG00000012755	smndc1	100	76.471	ENSSPUG00000004574	SMNDC1	100	76.471	Sphenodon_punctatus
ENSXMAG00000012755	smndc1	100	89.076	ENSSPAG00000000338	smndc1	100	89.076	Stegastes_partitus
ENSXMAG00000012755	smndc1	100	74.790	ENSSSCG00000030507	SMNDC1	100	74.790	Sus_scrofa
ENSXMAG00000012755	smndc1	100	76.471	ENSTGUG00000010599	SMNDC1	100	76.471	Taeniopygia_guttata
ENSXMAG00000012755	smndc1	100	82.773	ENSTRUG00000023281	smndc1	100	82.773	Takifugu_rubripes
ENSXMAG00000012755	smndc1	100	83.613	ENSTNIG00000013331	smndc1	100	83.613	Tetraodon_nigroviridis
ENSXMAG00000012755	smndc1	100	74.790	ENSTBEG00000014337	SMNDC1	100	74.790	Tupaia_belangeri
ENSXMAG00000012755	smndc1	100	74.790	ENSUAMG00000008142	SMNDC1	100	74.790	Ursus_americanus
ENSXMAG00000012755	smndc1	100	74.790	ENSUMAG00000023722	SMNDC1	100	74.790	Ursus_maritimus
ENSXMAG00000012755	smndc1	83	73.737	ENSVPAG00000003402	SMNDC1	100	73.737	Vicugna_pacos
ENSXMAG00000012755	smndc1	100	74.790	ENSVVUG00000007820	SMNDC1	100	74.790	Vulpes_vulpes
ENSXMAG00000012755	smndc1	57	63.971	ENSXETG00000015415	SMNDC1	96	63.971	Xenopus_tropicalis
ENSXMAG00000012755	smndc1	100	99.160	ENSXCOG00000009159	smndc1	100	99.160	Xiphophorus_couchianus