EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000012789 (Gene tree)
Gene ID: 102222223
Gene Symbol: snrnp70
Alias: U1 small ribonucleoprotein 70kd|snrp70|wu:fc20b04|zgc:136450
Full Name: small nuclear ribonucleoprotein U1 subunit 70
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 19517 bases
Position: chr16:163746-183262
Accession: 102222223
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000021939	RRM_1	PF00076.22	1.4e-19	1	1
ENSXMAP00000035993	RRM_1	PF00076.22	1.4e-19	1	1
ENSXMAP00000012834	RRM_1	PF00076.22	1.5e-19	1	1
ENSXMAP00000012834	U1snRNP70_N	PF12220.8	5.6e-25	1	1
ENSXMAP00000021939	U1snRNP70_N	PF12220.8	5.6e-25	1	1
ENSXMAP00000035993	U1snRNP70_N	PF12220.8	4.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000012850	-	5858	XM_014474953	ENSXMAP00000012834	466 (aa)	XP_014330439	M4AEE0
ENSXMAT00000035868	-	2026	-	ENSXMAP00000021939	466 (aa)	-	-
ENSXMAT00000033955	-	1371	-	ENSXMAP00000035993	456 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000012789's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000012789's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000012789	snrnp70	100	69.414	ENSAPEG00000006219	snrnp70	100	63.557	Amphiprion_percula
ENSXMAG00000012789	snrnp70	54	47.431	WBGene00004390	rnp-7	58	51.515	Caenorhabditis_elegans
ENSXMAG00000012789	snrnp70	62	77.700	ENSFDAG00000013830	SNRNP70	95	91.358	Fukomys_damarensis
ENSXMAG00000012789	snrnp70	100	91.045	ENSFHEG00000010298	snrnp70	100	91.045	Fundulus_heteroclitus
ENSXMAG00000012789	snrnp70	100	97.655	ENSGAFG00000003395	snrnp70	100	97.655	Gambusia_affinis
ENSXMAG00000012789	snrnp70	100	80.000	ENSHBUG00000018856	snrnp70	100	77.447	Haplochromis_burtoni
ENSXMAG00000012789	snrnp70	100	83.047	ENSKMAG00000005608	snrnp70	100	84.335	Kryptolebias_marmoratus
ENSXMAG00000012789	snrnp70	54	83.465	ENSLAFG00000028536	SNRNP70	96	92.342	Loxodonta_africana
ENSXMAG00000012789	snrnp70	100	79.618	ENSMZEG00005022849	snrnp70	100	77.282	Maylandia_zebra
ENSXMAG00000012789	snrnp70	100	65.417	ENSMMOG00000005467	snrnp70	75	84.135	Mola_mola
ENSXMAG00000012789	snrnp70	74	85.797	ENSMALG00000002275	snrnp70	90	79.869	Monopterus_albus
ENSXMAG00000012789	snrnp70	100	80.597	ENSOMEG00000013002	snrnp70	100	77.302	Oryzias_melastigma
ENSXMAG00000012789	snrnp70	50	90.043	ENSOARG00000012608	SNRNP70	61	91.556	Ovis_aries
ENSXMAG00000012789	snrnp70	56	60.700	ENSPSIG00000015251	SNRNP70	88	78.667	Pelodiscus_sinensis
ENSXMAG00000012789	snrnp70	100	98.291	ENSPFOG00000016671	snrnp70	100	98.291	Poecilia_formosa
ENSXMAG00000012789	snrnp70	100	98.077	ENSPLAG00000005912	snrnp70	100	98.077	Poecilia_latipinna
ENSXMAG00000012789	snrnp70	100	98.291	ENSPMEG00000008496	snrnp70	100	98.291	Poecilia_mexicana
ENSXMAG00000012789	snrnp70	100	97.863	ENSPREG00000005486	snrnp70	100	97.863	Poecilia_reticulata
ENSXMAG00000012789	snrnp70	57	73.485	ENSPCOG00000023103	SNRNP70	79	84.234	Propithecus_coquereli
ENSXMAG00000012789	snrnp70	100	79.830	ENSPNYG00000003258	snrnp70	100	77.282	Pundamilia_nyererei
ENSXMAG00000012789	snrnp70	100	67.026	ENSSMAG00000013978	snrnp70	72	84.615	Scophthalmus_maximus
ENSXMAG00000012789	snrnp70	100	99.561	ENSXCOG00000008991	snrnp70	100	99.561	Xiphophorus_couchianus