EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000012823 (Gene tree)
Gene ID: 102234146
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 6441 bases
Position: chr19:24339596-24346036
Accession: 102234146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000012851	RRM_1	PF00076.22	6.6e-32	1	2
ENSXMAP00000012851	RRM_1	PF00076.22	6.6e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000012867	-	2655	XM_005815140	ENSXMAP00000012851	316 (aa)	XP_005815197	M4AEF7

Gene Model

Click here to download ENSXMAG00000012823's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG
xma05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000012823's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000012823	srsf5a	100	67.081	ENSAPOG00000017395	srsf5a	80	78.039	Acanthochromis_polyacanthus
ENSXMAG00000012823	srsf5a	84	68.421	ENSACIG00000011892	srsf5a	98	80.282	Amphilophus_citrinellus
ENSXMAG00000012823	srsf5a	79	68.675	ENSAOCG00000014967	srsf5a	82	79.608	Amphiprion_ocellaris
ENSXMAG00000012823	srsf5a	79	68.675	ENSAPEG00000009297	srsf5a	82	79.608	Amphiprion_percula
ENSXMAG00000012823	srsf5a	80	82.143	ENSATEG00000000198	srsf5a	84	81.176	Anabas_testudineus
ENSXMAG00000012823	srsf5a	61	69.744	ENSAPLG00000002469	-	70	68.718	Anas_platyrhynchos
ENSXMAG00000012823	srsf5a	61	71.503	ENSACAG00000029015	-	68	69.430	Anolis_carolinensis
ENSXMAG00000012823	srsf5a	61	89.119	ENSACLG00000027166	srsf5a	82	83.529	Astatotilapia_calliptera
ENSXMAG00000012823	srsf5a	61	76.768	ENSAMXG00000030476	srsf5a	91	65.251	Astyanax_mexicanus
ENSXMAG00000012823	srsf5a	61	72.165	ENSCPBG00000021518	-	70	71.134	Chrysemys_picta_bellii
ENSXMAG00000012823	srsf5a	61	59.184	ENSCSAVG00000011376	-	78	59.184	Ciona_savignyi
ENSXMAG00000012823	srsf5a	80	84.921	ENSCSEG00000008109	srsf5a	79	84.706	Cynoglossus_semilaevis
ENSXMAG00000012823	srsf5a	79	94.400	ENSCVAG00000016982	srsf5a	98	95.588	Cyprinodon_variegatus
ENSXMAG00000012823	srsf5a	62	78.173	ENSDARG00000029818	srsf5a	100	73.944	Danio_rerio
ENSXMAG00000012823	srsf5a	61	72.816	ENSELUG00000020439	srsf5a	62	77.202	Esox_lucius
ENSXMAG00000012823	srsf5a	87	66.423	ENSFALG00000005098	-	64	69.430	Ficedula_albicollis
ENSXMAG00000012823	srsf5a	99	85.185	ENSFHEG00000003955	srsf5a	97	91.724	Fundulus_heteroclitus
ENSXMAG00000012823	srsf5a	61	78.756	ENSGMOG00000000869	srsf5a	94	77.720	Gadus_morhua
ENSXMAG00000012823	srsf5a	66	69.378	ENSGALG00000033259	SRSF5A	63	68.912	Gallus_gallus
ENSXMAG00000012823	srsf5a	93	79.032	ENSGAFG00000018237	srsf5a	94	78.457	Gambusia_affinis
ENSXMAG00000012823	srsf5a	61	81.865	ENSGACG00000011761	srsf5a	70	81.347	Gasterosteus_aculeatus
ENSXMAG00000012823	srsf5a	61	72.165	ENSGAGG00000007312	-	70	71.134	Gopherus_agassizii
ENSXMAG00000012823	srsf5a	61	88.601	ENSHBUG00000014048	srsf5a	82	83.137	Haplochromis_burtoni
ENSXMAG00000012823	srsf5a	61	82.902	ENSHCOG00000017557	srsf5a	62	84.456	Hippocampus_comes
ENSXMAG00000012823	srsf5a	61	79.793	ENSIPUG00000003439	srsf5a	69	79.793	Ictalurus_punctatus
ENSXMAG00000012823	srsf5a	61	83.420	ENSKMAG00000014937	srsf5a	91	71.885	Kryptolebias_marmoratus
ENSXMAG00000012823	srsf5a	61	85.279	ENSLBEG00000017153	srsf5a	74	85.279	Labrus_bergylta
ENSXMAG00000012823	srsf5a	61	74.611	ENSLACG00000017874	-	70	74.093	Latimeria_chalumnae
ENSXMAG00000012823	srsf5a	80	76.587	ENSMAMG00000000192	srsf5a	92	73.288	Mastacembelus_armatus
ENSXMAG00000012823	srsf5a	61	88.601	ENSMZEG00005010485	srsf5a	82	83.137	Maylandia_zebra
ENSXMAG00000012823	srsf5a	65	68.447	ENSMGAG00000011888	-	96	68.571	Meleagris_gallopavo
ENSXMAG00000012823	srsf5a	61	82.383	ENSMMOG00000009793	srsf5a	90	74.658	Mola_mola
ENSXMAG00000012823	srsf5a	79	64.940	ENSMALG00000021194	srsf5a	90	69.048	Monopterus_albus
ENSXMAG00000012823	srsf5a	61	88.083	ENSNBRG00000000771	srsf5a	82	83.137	Neolamprologus_brichardi
ENSXMAG00000012823	srsf5a	61	88.083	ENSONIG00000019583	srsf5a	82	83.137	Oreochromis_niloticus
ENSXMAG00000012823	srsf5a	93	77.288	ENSORLG00000009268	srsf5a	85	81.569	Oryzias_latipes
ENSXMAG00000012823	srsf5a	93	77.288	ENSORLG00020003281	srsf5	85	81.569	Oryzias_latipes_hni
ENSXMAG00000012823	srsf5a	93	77.288	ENSORLG00015023075	srsf5	85	81.569	Oryzias_latipes_hsok
ENSXMAG00000012823	srsf5a	79	78.656	ENSOMEG00000000628	srsf5a	85	81.176	Oryzias_melastigma
ENSXMAG00000012823	srsf5a	61	76.884	ENSPKIG00000002054	srsf5a	68	78.756	Paramormyrops_kingsleyae
ENSXMAG00000012823	srsf5a	61	71.134	ENSPSIG00000008238	-	69	68.041	Pelodiscus_sinensis
ENSXMAG00000012823	srsf5a	81	61.569	ENSPMGG00000020125	srsf5a	73	60.392	Periophthalmus_magnuspinnatus
ENSXMAG00000012823	srsf5a	100	95.963	ENSPFOG00000022993	srsf5a	100	95.963	Poecilia_formosa
ENSXMAG00000012823	srsf5a	99	95.950	ENSPLAG00000005508	srsf5a	99	95.950	Poecilia_latipinna
ENSXMAG00000012823	srsf5a	100	96.273	ENSPMEG00000016339	srsf5a	100	96.273	Poecilia_mexicana
ENSXMAG00000012823	srsf5a	100	97.484	ENSPREG00000018091	srsf5a	100	97.484	Poecilia_reticulata
ENSXMAG00000012823	srsf5a	61	88.601	ENSPNYG00000021245	srsf5a	82	83.137	Pundamilia_nyererei
ENSXMAG00000012823	srsf5a	61	78.238	ENSPNAG00000021333	srsf5a	66	78.238	Pygocentrus_nattereri
ENSXMAG00000012823	srsf5a	79	74.615	ENSSFOG00015008377	srsf5	66	78.756	Scleropages_formosus
ENSXMAG00000012823	srsf5a	79	80.469	ENSSMAG00000010899	srsf5a	84	79.008	Scophthalmus_maximus
ENSXMAG00000012823	srsf5a	80	67.460	ENSSDUG00000006103	srsf5a	90	75.342	Seriola_dumerili
ENSXMAG00000012823	srsf5a	80	67.857	ENSSLDG00000004146	srsf5a	90	75.685	Seriola_lalandi_dorsalis
ENSXMAG00000012823	srsf5a	61	67.876	ENSSPUG00000002052	-	68	66.321	Sphenodon_punctatus
ENSXMAG00000012823	srsf5a	79	78.313	ENSSPAG00000002821	srsf5a	82	77.647	Stegastes_partitus
ENSXMAG00000012823	srsf5a	61	87.047	ENSTRUG00000022908	srsf5a	83	81.961	Takifugu_rubripes
ENSXMAG00000012823	srsf5a	61	75.897	ENSXETG00000017937	srsf5a	72	76.289	Xenopus_tropicalis
ENSXMAG00000012823	srsf5a	100	95.268	ENSXCOG00000015338	srsf5a	100	95.268	Xiphophorus_couchianus