EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000012827 (Gene tree)
Gene ID: 102230614
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 6722 bases
Position: chr3:32954496-32961217
Accession: 102230614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000035773	RRM_1	PF00076.22	8e-18	1	1
ENSXMAP00000012847	RRM_1	PF00076.22	8.9e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000035646	-	2598	-	ENSXMAP00000035773	377 (aa)	-	-
ENSXMAT00000012863	-	2670	XM_005816388	ENSXMAP00000012847	401 (aa)	XP_005816445	M4AEF3

Gene Model

Click here to download ENSXMAG00000012827's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000012827's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000012827	rbm42	100	80.340	ENSAPOG00000015109	rbm42	100	79.369	Acanthochromis_polyacanthus
ENSXMAG00000012827	rbm42	100	78.272	ENSACIG00000010771	rbm42	100	76.543	Amphilophus_citrinellus
ENSXMAG00000012827	rbm42	100	81.068	ENSAOCG00000008873	rbm42	100	79.369	Amphiprion_ocellaris
ENSXMAG00000012827	rbm42	100	81.068	ENSAPEG00000012051	rbm42	99	79.369	Amphiprion_percula
ENSXMAG00000012827	rbm42	100	79.607	ENSATEG00000000536	rbm42	100	77.641	Anabas_testudineus
ENSXMAG00000012827	rbm42	100	80.976	ENSACLG00000004988	rbm42	100	81.127	Astatotilapia_calliptera
ENSXMAG00000012827	rbm42	100	70.813	ENSAMXG00000016545	rbm42	100	71.247	Astyanax_mexicanus
ENSXMAG00000012827	rbm42	97	77.805	ENSCSEG00000010248	rbm42	100	76.309	Cynoglossus_semilaevis
ENSXMAG00000012827	rbm42	100	87.255	ENSCVAG00000015589	rbm42	100	87.990	Cyprinodon_variegatus
ENSXMAG00000012827	rbm42	100	66.190	ENSDARG00000039910	rbm42	100	68.447	Danio_rerio
ENSXMAG00000012827	rbm42	97	36.785	FBgn0037342	CG2931	93	32.800	Drosophila_melanogaster
ENSXMAG00000012827	rbm42	100	68.396	ENSELUG00000022403	rbm42	100	68.246	Esox_lucius
ENSXMAG00000012827	rbm42	70	87.313	ENSFHEG00000006764	rbm42	89	89.474	Fundulus_heteroclitus
ENSXMAG00000012827	rbm42	100	68.613	ENSGMOG00000012660	rbm42	100	68.689	Gadus_morhua
ENSXMAG00000012827	rbm42	80	96.721	ENSGAFG00000009059	rbm42	100	98.697	Gambusia_affinis
ENSXMAG00000012827	rbm42	100	74.818	ENSGACG00000004170	rbm42	100	72.573	Gasterosteus_aculeatus
ENSXMAG00000012827	rbm42	100	80.732	ENSHBUG00000011141	rbm42	100	80.882	Haplochromis_burtoni
ENSXMAG00000012827	rbm42	100	77.094	ENSHCOG00000021214	rbm42	100	77.094	Hippocampus_comes
ENSXMAG00000012827	rbm42	100	67.431	ENSIPUG00000022365	rbm42	99	70.167	Ictalurus_punctatus
ENSXMAG00000012827	rbm42	91	80.108	ENSKMAG00000015287	rbm42	99	77.957	Kryptolebias_marmoratus
ENSXMAG00000012827	rbm42	85	77.364	ENSLBEG00000004578	-	96	75.000	Labrus_bergylta
ENSXMAG00000012827	rbm42	100	76.214	ENSLBEG00000017547	rbm42	100	74.939	Labrus_bergylta
ENSXMAG00000012827	rbm42	100	66.981	ENSLOCG00000003368	rbm42	100	64.471	Lepisosteus_oculatus
ENSXMAG00000012827	rbm42	100	78.729	ENSMAMG00000006708	rbm42	100	79.951	Mastacembelus_armatus
ENSXMAG00000012827	rbm42	100	80.976	ENSMZEG00005025234	rbm42	100	81.127	Maylandia_zebra
ENSXMAG00000012827	rbm42	93	80.845	ENSMALG00000015720	rbm42	100	79.032	Monopterus_albus
ENSXMAG00000012827	rbm42	100	81.356	ENSONIG00000008029	rbm42	100	79.177	Oreochromis_niloticus
ENSXMAG00000012827	rbm42	100	62.857	ENSORLG00020022507	rbm42	100	62.381	Oryzias_latipes_hni
ENSXMAG00000012827	rbm42	100	78.431	ENSORLG00015000659	rbm42	100	78.922	Oryzias_latipes_hsok
ENSXMAG00000012827	rbm42	68	80.000	ENSOMEG00000014332	rbm42	94	80.392	Oryzias_melastigma
ENSXMAG00000012827	rbm42	100	71.292	ENSPKIG00000015165	rbm42	100	69.784	Paramormyrops_kingsleyae
ENSXMAG00000012827	rbm42	92	68.254	ENSPMGG00000003569	rbm42	100	98.571	Periophthalmus_magnuspinnatus
ENSXMAG00000012827	rbm42	61	51.271	ENSPMAG00000008633	rbm42	100	48.042	Petromyzon_marinus
ENSXMAG00000012827	rbm42	100	97.506	ENSPFOG00000007701	rbm42	100	97.506	Poecilia_formosa
ENSXMAG00000012827	rbm42	100	97.257	ENSPLAG00000009405	rbm42	100	97.257	Poecilia_latipinna
ENSXMAG00000012827	rbm42	100	97.257	ENSPMEG00000010375	rbm42	100	97.257	Poecilia_mexicana
ENSXMAG00000012827	rbm42	100	97.756	ENSPREG00000018102	rbm42	100	97.756	Poecilia_reticulata
ENSXMAG00000012827	rbm42	100	80.685	ENSPNYG00000014460	rbm42	100	80.835	Pundamilia_nyererei
ENSXMAG00000012827	rbm42	100	67.586	ENSPNAG00000009961	rbm42	100	69.668	Pygocentrus_nattereri
ENSXMAG00000012827	rbm42	100	71.090	ENSSFOG00015019227	rbm42	100	69.668	Scleropages_formosus
ENSXMAG00000012827	rbm42	100	76.341	ENSSMAG00000011935	rbm42	100	74.453	Scophthalmus_maximus
ENSXMAG00000012827	rbm42	100	81.663	ENSSDUG00000004033	rbm42	100	79.951	Seriola_dumerili
ENSXMAG00000012827	rbm42	100	76.240	ENSSLDG00000009918	rbm42	100	84.706	Seriola_lalandi_dorsalis
ENSXMAG00000012827	rbm42	100	80.976	ENSSPAG00000019871	rbm42	100	79.369	Stegastes_partitus
ENSXMAG00000012827	rbm42	100	73.058	ENSTRUG00000024586	-	76	71.117	Takifugu_rubripes
ENSXMAG00000012827	rbm42	99	62.528	ENSTNIG00000011669	rbm42	100	62.443	Tetraodon_nigroviridis
ENSXMAG00000012827	rbm42	100	58.824	ENSXETG00000017599	rbm42	100	58.392	Xenopus_tropicalis