EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000012939 (Gene tree)
Gene ID
102237105
Gene Symbol
rbfox3b
Alias
rbfox3l|si:ch73-322f21.1
Full Name
RNA binding fox-1 homolog 3
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
334809 bases
Position
chr16:1971709-2306517
Accession
102237105
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000025787Fox-1_CPF12414.85e-4311
ENSXMAP00000012988Fox-1_CPF12414.85.5e-4311
ENSXMAP00000023386Fox-1_CPF12414.87.7e-4311
ENSXMAP00000039496Fox-1_CPF12414.81.6e-4211
ENSXMAP00000034914Fox-1_CPF12414.81.7e-4211
ENSXMAP00000012988RRM_1PF00076.221.7e-1811
ENSXMAP00000025787RRM_1PF00076.221.8e-1811
ENSXMAP00000023386RRM_1PF00076.221.8e-1811
ENSXMAP00000039496RRM_1PF00076.220.0001411
ENSXMAP00000034914RRM_1PF00076.220.0001511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000013004-1241XM_005803185ENSXMAP00000012988367 (aa)XP_005803242M4AEU4
ENSXMAT00000035332-3946XM_005803183ENSXMAP00000025787381 (aa)XP_005803240UPI0003B539B0
ENSXMAT00000024257-3803XM_023348370ENSXMAP00000023386379 (aa)XP_023204138-
ENSXMAT00000039092-3684-ENSXMAP00000034914327 (aa)--
ENSXMAT00000025552-3922-ENSXMAP00000039496312 (aa)--
Gene Model
Click here to download ENSXMAG00000012939's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000012939's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000012939rbfox3b8180.000ENSG00000167281RBFOX39989.231Homo_sapiens
ENSXMAG00000012939rbfox3b10099.738ENSAPOG00000021630rbfox3b10099.738Acanthochromis_polyacanthus
ENSXMAG00000012939rbfox3b9770.350ENSAPOG00000015658-9270.620Acanthochromis_polyacanthus
ENSXMAG00000012939rbfox3b8975.862ENSAMEG00000014170RBFOX39972.751Ailuropoda_melanoleuca
ENSXMAG00000012939rbfox3b8470.552ENSACIG00000003768-9070.859Amphilophus_citrinellus
ENSXMAG00000012939rbfox3b8595.513ENSACIG00000010817rbfox3b10095.238Amphilophus_citrinellus
ENSXMAG00000012939rbfox3b9780.000ENSAOCG00000010786-9880.811Amphiprion_ocellaris
ENSXMAG00000012939rbfox3b10099.728ENSAOCG00000012358rbfox3b10099.728Amphiprion_ocellaris
ENSXMAG00000012939rbfox3b8875.216ENSAPEG00000015891-9471.728Amphiprion_percula
ENSXMAG00000012939rbfox3b9790.217ENSAPEG00000019081rbfox3b10089.674Amphiprion_percula
ENSXMAG00000012939rbfox3b8179.333ENSATEG00000023101-9779.560Anabas_testudineus
ENSXMAG00000012939rbfox3b8589.766ENSATEG00000019945rbfox3b10089.275Anabas_testudineus
ENSXMAG00000012939rbfox3b9480.501ENSACAG00000016093RBFOX39981.564Anolis_carolinensis
ENSXMAG00000012939rbfox3b8179.667ENSANAG00000023457RBFOX310082.484Aotus_nancymaae
ENSXMAG00000012939rbfox3b10098.953ENSACLG00000020011rbfox3b10098.953Astatotilapia_calliptera
ENSXMAG00000012939rbfox3b9682.016ENSACLG00000025552-10082.834Astatotilapia_calliptera
ENSXMAG00000012939rbfox3b9981.843ENSAMXG00000042841rbfox3b10086.158Astyanax_mexicanus
ENSXMAG00000012939rbfox3b10083.554ENSAMXG00000037246rbfox3a10085.215Astyanax_mexicanus
ENSXMAG00000012939rbfox3b9162.651ENSBTAG00000006280RBFOX310065.994Bos_taurus
ENSXMAG00000012939rbfox3b8174.916ENSCJAG00000009563RBFOX310072.022Callithrix_jacchus
ENSXMAG00000012939rbfox3b6584.583ENSCAFG00000005547RBFOX39979.286Canis_familiaris
ENSXMAG00000012939rbfox3b9558.355ENSCAFG00020008126RBFOX310072.533Canis_lupus_dingo
ENSXMAG00000012939rbfox3b9558.355ENSCHIG00000009124RBFOX310072.533Capra_hircus
ENSXMAG00000012939rbfox3b9162.763ENSTSYG00000029617RBFOX310072.376Carlito_syrichta
ENSXMAG00000012939rbfox3b9163.881ENSCPOG00000021703RBFOX310071.958Cavia_porcellus
ENSXMAG00000012939rbfox3b8179.667ENSCCAG00000028450RBFOX310082.484Cebus_capucinus
ENSXMAG00000012939rbfox3b8180.000ENSCATG00000018349RBFOX310082.803Cercocebus_atys
ENSXMAG00000012939rbfox3b9164.264ENSCLAG00000006449RBFOX310072.340Chinchilla_lanigera
ENSXMAG00000012939rbfox3b8180.000ENSCSAG00000002355RBFOX310082.803Chlorocebus_sabaeus
ENSXMAG00000012939rbfox3b8984.615ENSCPBG00000010904RBFOX310083.706Chrysemys_picta_bellii
ENSXMAG00000012939rbfox3b8180.000ENSCANG00000043120RBFOX310082.803Colobus_angolensis_palliatus
ENSXMAG00000012939rbfox3b9558.311ENSCGRG00001019476Rbfox310072.414Cricetulus_griseus_chok1gshd
ENSXMAG00000012939rbfox3b9558.311ENSCGRG00000003268Rbfox310072.414Cricetulus_griseus_crigri
ENSXMAG00000012939rbfox3b9975.654ENSCSEG00000020606RBFOX310076.694Cynoglossus_semilaevis
ENSXMAG00000012939rbfox3b9979.891ENSCSEG00000015567RBFOX39881.132Cynoglossus_semilaevis
ENSXMAG00000012939rbfox3b10099.728ENSCVAG00000006882rbfox3b10099.728Cyprinodon_variegatus
ENSXMAG00000012939rbfox3b10077.955ENSDARG00000074310rbfox3b9792.228Danio_rerio
ENSXMAG00000012939rbfox3b10083.554ENSDARG00000010083rbfox3a10085.445Danio_rerio
ENSXMAG00000012939rbfox3b7165.798ENSDNOG00000039391RBFOX310058.701Dasypus_novemcinctus
ENSXMAG00000012939rbfox3b9654.023ENSDORG00000005352Rbfox310070.000Dipodomys_ordii
ENSXMAG00000012939rbfox3b8151.460ENSEBUG00000013559RBFOX38853.968Eptatretus_burgeri
ENSXMAG00000012939rbfox3b9765.455ENSEBUG00000002129RBFOX39969.972Eptatretus_burgeri
ENSXMAG00000012939rbfox3b8180.132ENSEASG00005005059RBFOX310082.278Equus_asinus_asinus
ENSXMAG00000012939rbfox3b8179.801ENSECAG00000023811RBFOX310081.962Equus_caballus
ENSXMAG00000012939rbfox3b8478.824ENSEEUG00000013974RBFOX37688.000Erinaceus_europaeus
ENSXMAG00000012939rbfox3b5263.776ENSELUG00000009807-6455.357Esox_lucius
ENSXMAG00000012939rbfox3b10095.276ENSELUG00000017963rbfox3b10095.276Esox_lucius
ENSXMAG00000012939rbfox3b9479.722ENSFCAG00000002555RBFOX310082.317Felis_catus
ENSXMAG00000012939rbfox3b9068.132ENSFALG00000012288RBFOX39964.356Ficedula_albicollis
ENSXMAG00000012939rbfox3b9554.737ENSFDAG00000007489RBFOX310066.931Fukomys_damarensis
ENSXMAG00000012939rbfox3b9694.295ENSFHEG00000008550rbfox3b10094.295Fundulus_heteroclitus
ENSXMAG00000012939rbfox3b10057.143ENSGMOG00000019304-10069.519Gadus_morhua
ENSXMAG00000012939rbfox3b9482.402ENSGALG00000032889RBFOX39984.314Gallus_gallus
ENSXMAG00000012939rbfox3b10092.916ENSGAFG00000005025rbfox3b10092.916Gambusia_affinis
ENSXMAG00000012939rbfox3b9559.259ENSGACG00000002138-10072.487Gasterosteus_aculeatus
ENSXMAG00000012939rbfox3b9884.636ENSGAGG00000020025RBFOX310083.706Gopherus_agassizii
ENSXMAG00000012939rbfox3b8180.000ENSGGOG00000012546RBFOX310082.803Gorilla_gorilla
ENSXMAG00000012939rbfox3b10099.213ENSHBUG00000018099rbfox3b10099.213Haplochromis_burtoni
ENSXMAG00000012939rbfox3b9081.792ENSHBUG00000023098-9982.659Haplochromis_burtoni
ENSXMAG00000012939rbfox3b9163.205ENSHGLG00000008679RBFOX310071.053Heterocephalus_glaber_female
ENSXMAG00000012939rbfox3b9556.283ENSHGLG00100014739RBFOX310068.158Heterocephalus_glaber_male
ENSXMAG00000012939rbfox3b8574.359ENSHCOG00000001863RBFOX39374.763Hippocampus_comes
ENSXMAG00000012939rbfox3b9880.055ENSHCOG00000007444RBFOX39480.811Hippocampus_comes
ENSXMAG00000012939rbfox3b8573.547ENSIPUG00000021966rbfox3b9885.606Ictalurus_punctatus
ENSXMAG00000012939rbfox3b10082.609ENSIPUG00000012010rbfox3a10084.399Ictalurus_punctatus
ENSXMAG00000012939rbfox3b9553.134ENSSTOG00000026817RBFOX310067.066Ictidomys_tridecemlineatus
ENSXMAG00000012939rbfox3b9557.560ENSJJAG00000014167Rbfox310072.533Jaculus_jaculus
ENSXMAG00000012939rbfox3b10099.728ENSKMAG00000006726rbfox3b10099.728Kryptolebias_marmoratus
ENSXMAG00000012939rbfox3b10084.718ENSLBEG00000022508-10086.376Labrus_bergylta
ENSXMAG00000012939rbfox3b10099.472ENSLBEG00000004030rbfox3b10099.472Labrus_bergylta
ENSXMAG00000012939rbfox3b8871.549ENSLACG00000018409-10068.861Latimeria_chalumnae
ENSXMAG00000012939rbfox3b5149.704ENSLACG00000000021-9561.957Latimeria_chalumnae
ENSXMAG00000012939rbfox3b8888.650ENSLOCG00000012267rbfox3a9890.491Lepisosteus_oculatus
ENSXMAG00000012939rbfox3b8973.743ENSLAFG00000016623RBFOX310072.000Loxodonta_africana
ENSXMAG00000012939rbfox3b9160.725ENSMFAG00000002247RBFOX310072.299Macaca_fascicularis
ENSXMAG00000012939rbfox3b8180.000ENSMMUG00000023028RBFOX310082.803Macaca_mulatta
ENSXMAG00000012939rbfox3b8179.667ENSMNEG00000041147RBFOX310082.484Macaca_nemestrina
ENSXMAG00000012939rbfox3b8180.000ENSMLEG00000025686RBFOX310082.803Mandrillus_leucophaeus
ENSXMAG00000012939rbfox3b8880.308ENSMAMG00000020600-9978.448Mastacembelus_armatus
ENSXMAG00000012939rbfox3b8588.782ENSMAMG00000019810rbfox3b10087.619Mastacembelus_armatus
ENSXMAG00000012939rbfox3b10099.213ENSMZEG00005000781rbfox3b10099.213Maylandia_zebra
ENSXMAG00000012939rbfox3b8362.798ENSMZEG00005003055-8162.798Maylandia_zebra
ENSXMAG00000012939rbfox3b6080.909ENSMGAG00000005600RBFOX38381.279Meleagris_gallopavo
ENSXMAG00000012939rbfox3b9163.664ENSMAUG00000013543Rbfox310071.088Mesocricetus_auratus
ENSXMAG00000012939rbfox3b8881.288ENSMICG00000014898RBFOX310081.789Microcebus_murinus
ENSXMAG00000012939rbfox3b9557.407ENSMOCG00000015373Rbfox310071.543Microtus_ochrogaster
ENSXMAG00000012939rbfox3b10097.561ENSMMOG00000020193rbfox3b10097.561Mola_mola
ENSXMAG00000012939rbfox3b9480.501ENSMODG00000002089RBFOX39982.402Monodelphis_domestica
ENSXMAG00000012939rbfox3b10098.093ENSMALG00000020407rbfox3b10098.093Monopterus_albus
ENSXMAG00000012939rbfox3b10084.252ENSMALG00000018270-10085.039Monopterus_albus
ENSXMAG00000012939rbfox3b9566.465MGP_CAROLIEiJ_G0017487Rbfox39689.209Mus_caroli
ENSXMAG00000012939rbfox3b9568.278ENSMUSG00000025576Rbfox39689.209Mus_musculus
ENSXMAG00000012939rbfox3b9567.169MGP_PahariEiJ_G0018614Rbfox39689.928Mus_pahari
ENSXMAG00000012939rbfox3b9566.767MGP_SPRETEiJ_G0018331Rbfox39689.209Mus_spretus
ENSXMAG00000012939rbfox3b9072.441ENSMPUG00000012319RBFOX39974.211Mustela_putorius_furo
ENSXMAG00000012939rbfox3b9558.466ENSNGAG00000018006Rbfox310072.606Nannospalax_galili
ENSXMAG00000012939rbfox3b10098.093ENSNBRG00000010102rbfox3b10098.093Neolamprologus_brichardi
ENSXMAG00000012939rbfox3b9075.758ENSNBRG00000022885-9275.224Neolamprologus_brichardi
ENSXMAG00000012939rbfox3b8556.051ENSNLEG00000000153-9656.051Nomascus_leucogenys
ENSXMAG00000012939rbfox3b7885.106ENSMEUG00000004218-8474.194Notamacropus_eugenii
ENSXMAG00000012939rbfox3b7076.562ENSOPRG00000016279-7974.611Ochotona_princeps
ENSXMAG00000012939rbfox3b8181.728ENSODEG00000009433RBFOX310082.222Octodon_degus
ENSXMAG00000012939rbfox3b9279.941ENSONIG00000007282-9980.826Oreochromis_niloticus
ENSXMAG00000012939rbfox3b100100.000ENSONIG00000009549rbfox3b100100.000Oreochromis_niloticus
ENSXMAG00000012939rbfox3b6960.403ENSOCUG00000014217RBFOX37762.989Oryctolagus_cuniculus
ENSXMAG00000012939rbfox3b10098.950ENSORLG00000000905rbfox3b7998.082Oryzias_latipes
ENSXMAG00000012939rbfox3b10098.950ENSORLG00020018030rbfox3b9998.082Oryzias_latipes_hni
ENSXMAG00000012939rbfox3b10099.183ENSORLG00015009200rbfox3b10099.183Oryzias_latipes_hsok
ENSXMAG00000012939rbfox3b8593.009ENSOMEG00000014677rbfox3b8693.009Oryzias_melastigma
ENSXMAG00000012939rbfox3b8879.938ENSOGAG00000029595RBFOX39876.294Otolemur_garnettii
ENSXMAG00000012939rbfox3b9948.768ENSOARG00000002908RBFOX310056.962Ovis_aries
ENSXMAG00000012939rbfox3b6981.961ENSPPAG00000025383RBFOX39981.882Pan_paniscus
ENSXMAG00000012939rbfox3b9161.656ENSPPRG00000007819RBFOX310072.394Panthera_pardus
ENSXMAG00000012939rbfox3b8180.000ENSPTRG00000009727RBFOX310082.803Pan_troglodytes
ENSXMAG00000012939rbfox3b8180.000ENSPANG00000019837RBFOX310082.803Papio_anubis
ENSXMAG00000012939rbfox3b10088.660ENSPKIG00000010299rbfox3a9988.439Paramormyrops_kingsleyae
ENSXMAG00000012939rbfox3b10065.714ENSPKIG00000022633-9968.800Paramormyrops_kingsleyae
ENSXMAG00000012939rbfox3b8491.667ENSPMGG00000008000rbfox3b10091.950Periophthalmus_magnuspinnatus
ENSXMAG00000012939rbfox3b9557.937ENSPEMG00000010500Rbfox310072.074Peromyscus_maniculatus_bairdii
ENSXMAG00000012939rbfox3b5075.980ENSPMAG00000008689rbfox3b9977.941Petromyzon_marinus
ENSXMAG00000012939rbfox3b9176.056ENSPCIG00000005766RBFOX310076.000Phascolarctos_cinereus
ENSXMAG00000012939rbfox3b10099.738ENSPFOG00000018294rbfox3b10099.738Poecilia_formosa
ENSXMAG00000012939rbfox3b6794.466ENSPLAG00000000481rbfox3b7894.444Poecilia_latipinna
ENSXMAG00000012939rbfox3b9693.960ENSPMEG00000022997rbfox3b10093.960Poecilia_mexicana
ENSXMAG00000012939rbfox3b10099.728ENSPREG00000012886rbfox3b10099.191Poecilia_reticulata
ENSXMAG00000012939rbfox3b8970.000ENSPPYG00000008704RBFOX310070.588Pongo_abelii
ENSXMAG00000012939rbfox3b8165.318ENSPCAG00000001401RBFOX310065.097Procavia_capensis
ENSXMAG00000012939rbfox3b9861.798ENSPCOG00000012689RBFOX310071.468Propithecus_coquereli
ENSXMAG00000012939rbfox3b8159.366ENSPVAG00000015243RBFOX310063.812Pteropus_vampyrus
ENSXMAG00000012939rbfox3b9876.667ENSPNYG00000009079-9777.297Pundamilia_nyererei
ENSXMAG00000012939rbfox3b9786.486ENSPNYG00000010414rbfox3b10086.486Pundamilia_nyererei
ENSXMAG00000012939rbfox3b9674.000ENSPNAG00000018173rbfox3b9174.000Pygocentrus_nattereri
ENSXMAG00000012939rbfox3b10084.197ENSPNAG00000002889rbfox3a10086.010Pygocentrus_nattereri
ENSXMAG00000012939rbfox3b8179.402ENSRNOG00000003386Rbfox310081.962Rattus_norvegicus
ENSXMAG00000012939rbfox3b9480.000ENSRBIG00000040449RBFOX39981.894Rhinopithecus_bieti
ENSXMAG00000012939rbfox3b8180.000ENSRROG00000000766RBFOX310082.803Rhinopithecus_roxellana
ENSXMAG00000012939rbfox3b8179.667ENSSBOG00000031591RBFOX310082.484Saimiri_boliviensis_boliviensis
ENSXMAG00000012939rbfox3b9176.056ENSSHAG00000016076RBFOX310076.000Sarcophilus_harrisii
ENSXMAG00000012939rbfox3b10087.113ENSSFOG00015023260rbfox3a10088.402Scleropages_formosus
ENSXMAG00000012939rbfox3b9770.556ENSSFOG00015004716RBFOX39972.652Scleropages_formosus
ENSXMAG00000012939rbfox3b9682.289ENSSMAG00000019052-10082.803Scophthalmus_maximus
ENSXMAG00000012939rbfox3b9699.329ENSSMAG00000012618rbfox3b8795.312Scophthalmus_maximus
ENSXMAG00000012939rbfox3b9777.437ENSSDUG00000015801-9977.898Seriola_dumerili
ENSXMAG00000012939rbfox3b9694.295ENSSDUG00000023183rbfox3b10094.295Seriola_dumerili
ENSXMAG00000012939rbfox3b9780.780ENSSLDG00000016098-9981.132Seriola_lalandi_dorsalis
ENSXMAG00000012939rbfox3b100100.000ENSSLDG00000000149rbfox3b100100.000Seriola_lalandi_dorsalis
ENSXMAG00000012939rbfox3b9577.955ENSSPUG00000011733RBFOX39983.706Sphenodon_punctatus
ENSXMAG00000012939rbfox3b7477.574ENSSPAG00000004898-8578.049Stegastes_partitus
ENSXMAG00000012939rbfox3b9790.761ENSSPAG00000017571rbfox3b10090.761Stegastes_partitus
ENSXMAG00000012939rbfox3b7380.882ENSSSCG00000039498RBFOX310071.687Sus_scrofa
ENSXMAG00000012939rbfox3b9089.595ENSTRUG00000004894rbfox3b9790.202Takifugu_rubripes
ENSXMAG00000012939rbfox3b8889.014ENSTNIG00000011278rbfox3b10082.750Tetraodon_nigroviridis
ENSXMAG00000012939rbfox3b8245.938ENSTBEG00000004296-8477.778Tupaia_belangeri
ENSXMAG00000012939rbfox3b9253.279ENSTTRG00000003676RBFOX310066.759Tursiops_truncatus
ENSXMAG00000012939rbfox3b8180.000ENSUAMG00000004668RBFOX310082.803Ursus_americanus
ENSXMAG00000012939rbfox3b9480.278ENSVVUG00000017864RBFOX310082.484Vulpes_vulpes
ENSXMAG00000012939rbfox3b8867.147ENSXETG00000020236rbfox39863.566Xenopus_tropicalis
ENSXMAG00000012939rbfox3b9898.338ENSXCOG00000018262rbfox3b10098.338Xiphophorus_couchianus

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