EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000013141 (Gene tree)
Gene ID: 102225652
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 16178 bases
Position: chr3:16841117-16857294
Accession: 102225652
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000013174	ResIII	PF04851.15	1.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000013190	-	2577	XM_023331054	ENSXMAP00000013174	858 (aa)	XP_023186822	M4AFD0

Gene Model

Click here to download ENSXMAG00000013141's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000013141's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000013141	rad54b	84	58.607	ENSG00000265817	FSBP	99	58.607	Homo_sapiens
ENSXMAG00000013141	rad54b	99	54.585	ENSG00000197275	RAD54B	99	54.585	Homo_sapiens
ENSXMAG00000013141	rad54b	99	55.495	ENSAMEG00000005834	-	99	55.495	Ailuropoda_melanoleuca
ENSXMAG00000013141	rad54b	99	81.486	ENSACIG00000013005	rad54b	99	81.486	Amphilophus_citrinellus
ENSXMAG00000013141	rad54b	99	76.616	ENSAOCG00000008523	rad54b	99	76.616	Amphiprion_ocellaris
ENSXMAG00000013141	rad54b	99	78.231	ENSAPEG00000001673	rad54b	99	78.231	Amphiprion_percula
ENSXMAG00000013141	rad54b	99	81.178	ENSATEG00000001527	rad54b	99	81.178	Anabas_testudineus
ENSXMAG00000013141	rad54b	100	57.821	ENSAPLG00000014366	-	100	57.821	Anas_platyrhynchos
ENSXMAG00000013141	rad54b	91	60.102	ENSACAG00000003671	-	98	60.102	Anolis_carolinensis
ENSXMAG00000013141	rad54b	74	60.031	ENSANAG00000019528	-	99	60.031	Aotus_nancymaae
ENSXMAG00000013141	rad54b	99	82.771	ENSACLG00000007826	rad54b	99	82.771	Astatotilapia_calliptera
ENSXMAG00000013141	rad54b	90	68.072	ENSAMXG00000039985	rad54b	95	67.714	Astyanax_mexicanus
ENSXMAG00000013141	rad54b	99	56.079	ENSBTAG00000000632	RAD54B	99	56.079	Bos_taurus
ENSXMAG00000013141	rad54b	83	35.859	WBGene00013792	Y116A8C.13	97	34.067	Caenorhabditis_elegans
ENSXMAG00000013141	rad54b	99	55.022	ENSCJAG00000000080	-	99	58.687	Callithrix_jacchus
ENSXMAG00000013141	rad54b	99	55.713	ENSCAFG00000009179	RAD54B	99	55.713	Canis_familiaris
ENSXMAG00000013141	rad54b	99	55.713	ENSCAFG00020012084	-	99	55.713	Canis_lupus_dingo
ENSXMAG00000013141	rad54b	99	56.188	ENSCHIG00000008230	-	99	56.298	Capra_hircus
ENSXMAG00000013141	rad54b	99	55.338	ENSTSYG00000013234	-	99	55.338	Carlito_syrichta
ENSXMAG00000013141	rad54b	100	55.738	ENSCPOG00000011643	-	100	55.738	Cavia_porcellus
ENSXMAG00000013141	rad54b	99	54.842	ENSCCAG00000011754	-	99	58.824	Cebus_capucinus
ENSXMAG00000013141	rad54b	99	54.705	ENSCATG00000030661	-	99	58.630	Cercocebus_atys
ENSXMAG00000013141	rad54b	99	56.902	ENSCLAG00000010476	-	99	56.902	Chinchilla_lanigera
ENSXMAG00000013141	rad54b	99	54.705	ENSCSAG00000012712	-	99	54.705	Chlorocebus_sabaeus
ENSXMAG00000013141	rad54b	94	61.567	ENSCPBG00000003204	-	86	64.151	Chrysemys_picta_bellii
ENSXMAG00000013141	rad54b	99	54.923	ENSCANG00000017939	-	99	58.904	Colobus_angolensis_palliatus
ENSXMAG00000013141	rad54b	99	55.717	ENSCGRG00001020184	Rad54b	99	55.717	Cricetulus_griseus_chok1gshd
ENSXMAG00000013141	rad54b	99	54.171	ENSCGRG00000016752	Rad54b	99	54.171	Cricetulus_griseus_crigri
ENSXMAG00000013141	rad54b	99	77.972	ENSCSEG00000001601	rad54b	99	77.972	Cynoglossus_semilaevis
ENSXMAG00000013141	rad54b	99	87.400	ENSCVAG00000009200	rad54b	99	87.400	Cyprinodon_variegatus
ENSXMAG00000013141	rad54b	99	63.481	ENSDARG00000092134	rad54b	99	67.919	Danio_rerio
ENSXMAG00000013141	rad54b	99	55.689	ENSDNOG00000015535	-	99	55.689	Dasypus_novemcinctus
ENSXMAG00000013141	rad54b	99	56.566	ENSDORG00000002492	Rad54b	99	56.742	Dipodomys_ordii
ENSXMAG00000013141	rad54b	86	57.629	ENSETEG00000010605	-	100	57.629	Echinops_telfairi
ENSXMAG00000013141	rad54b	100	46.774	ENSEBUG00000009104	rad54b	99	46.774	Eptatretus_burgeri
ENSXMAG00000013141	rad54b	91	59.045	ENSEASG00005004021	-	89	59.045	Equus_asinus_asinus
ENSXMAG00000013141	rad54b	99	55.120	ENSECAG00000021949	-	99	55.120	Equus_caballus
ENSXMAG00000013141	rad54b	76	51.875	ENSEEUG00000008056	-	72	51.875	Erinaceus_europaeus
ENSXMAG00000013141	rad54b	96	80.000	ENSELUG00000009287	rad54b	99	69.272	Esox_lucius
ENSXMAG00000013141	rad54b	99	55.229	ENSFCAG00000015513	-	99	59.482	Felis_catus
ENSXMAG00000013141	rad54b	99	57.438	ENSFALG00000005467	-	99	57.405	Ficedula_albicollis
ENSXMAG00000013141	rad54b	99	55.873	ENSFDAG00000020541	-	99	55.873	Fukomys_damarensis
ENSXMAG00000013141	rad54b	94	85.573	ENSFHEG00000014382	rad54b	89	85.573	Fundulus_heteroclitus
ENSXMAG00000013141	rad54b	91	79.214	ENSGMOG00000014774	rad54b	98	79.214	Gadus_morhua
ENSXMAG00000013141	rad54b	100	57.713	ENSGALG00000043597	RAD54B	100	57.713	Gallus_gallus
ENSXMAG00000013141	rad54b	99	97.297	ENSGAFG00000007901	rad54b	100	94.988	Gambusia_affinis
ENSXMAG00000013141	rad54b	99	75.054	ENSGACG00000009128	rad54b	99	75.054	Gasterosteus_aculeatus
ENSXMAG00000013141	rad54b	94	61.322	ENSGAGG00000018747	-	88	61.322	Gopherus_agassizii
ENSXMAG00000013141	rad54b	99	54.874	ENSGGOG00000023516	-	99	54.874	Gorilla_gorilla
ENSXMAG00000013141	rad54b	98	84.672	ENSHBUG00000016017	rad54b	90	84.672	Haplochromis_burtoni
ENSXMAG00000013141	rad54b	99	55.076	ENSHGLG00000008263	RAD54B	98	55.076	Heterocephalus_glaber_female
ENSXMAG00000013141	rad54b	99	54.399	ENSHGLG00100008108	-	98	54.399	Heterocephalus_glaber_male
ENSXMAG00000013141	rad54b	99	72.676	ENSHCOG00000004764	rad54b	98	74.688	Hippocampus_comes
ENSXMAG00000013141	rad54b	96	65.228	ENSIPUG00000018531	rad54b	87	65.228	Ictalurus_punctatus
ENSXMAG00000013141	rad54b	99	54.063	ENSSTOG00000010791	-	99	54.063	Ictidomys_tridecemlineatus
ENSXMAG00000013141	rad54b	99	54.121	ENSJJAG00000010314	Rad54b	99	54.536	Jaculus_jaculus
ENSXMAG00000013141	rad54b	99	79.698	ENSKMAG00000004744	rad54b	99	79.698	Kryptolebias_marmoratus
ENSXMAG00000013141	rad54b	86	63.576	ENSLACG00000000859	-	100	63.576	Latimeria_chalumnae
ENSXMAG00000013141	rad54b	99	62.116	ENSLOCG00000010100	rad54b	96	67.831	Lepisosteus_oculatus
ENSXMAG00000013141	rad54b	90	58.712	ENSLAFG00000015315	-	97	58.712	Loxodonta_africana
ENSXMAG00000013141	rad54b	99	54.705	ENSMFAG00000031629	-	99	58.630	Macaca_fascicularis
ENSXMAG00000013141	rad54b	99	54.705	ENSMMUG00000005659	-	99	54.705	Macaca_mulatta
ENSXMAG00000013141	rad54b	99	54.923	ENSMNEG00000016408	-	99	54.923	Macaca_nemestrina
ENSXMAG00000013141	rad54b	99	54.595	ENSMLEG00000006946	-	99	54.595	Mandrillus_leucophaeus
ENSXMAG00000013141	rad54b	99	78.369	ENSMAMG00000012269	rad54b	99	78.369	Mastacembelus_armatus
ENSXMAG00000013141	rad54b	98	84.672	ENSMZEG00005005281	rad54b	99	83.212	Maylandia_zebra
ENSXMAG00000013141	rad54b	100	56.757	ENSMGAG00000012024	-	100	56.757	Meleagris_gallopavo
ENSXMAG00000013141	rad54b	99	55.968	ENSMAUG00000013586	Rad54b	99	55.968	Mesocricetus_auratus
ENSXMAG00000013141	rad54b	99	55.682	ENSMICG00000000754	-	100	55.682	Microcebus_murinus
ENSXMAG00000013141	rad54b	100	55.654	ENSMOCG00000020035	Rad54b	100	55.729	Microtus_ochrogaster
ENSXMAG00000013141	rad54b	99	79.205	ENSMMOG00000003394	rad54b	99	79.205	Mola_mola
ENSXMAG00000013141	rad54b	92	58.750	ENSMODG00000007343	-	98	58.750	Monodelphis_domestica
ENSXMAG00000013141	rad54b	74	84.094	ENSMALG00000001520	rad54b	99	84.094	Monopterus_albus
ENSXMAG00000013141	rad54b	99	55.211	MGP_CAROLIEiJ_G0025810	Rad54b	99	55.211	Mus_caroli
ENSXMAG00000013141	rad54b	99	54.435	ENSMUSG00000078773	Rad54b	99	54.435	Mus_musculus
ENSXMAG00000013141	rad54b	99	55.211	MGP_PahariEiJ_G0023933	Rad54b	99	55.211	Mus_pahari
ENSXMAG00000013141	rad54b	99	54.807	MGP_SPRETEiJ_G0026758	Rad54b	99	54.807	Mus_spretus
ENSXMAG00000013141	rad54b	91	59.245	ENSMPUG00000008878	-	97	59.245	Mustela_putorius_furo
ENSXMAG00000013141	rad54b	91	59.422	ENSMLUG00000008953	-	86	59.422	Myotis_lucifugus
ENSXMAG00000013141	rad54b	99	55.033	ENSNGAG00000017537	Rad54b	99	55.033	Nannospalax_galili
ENSXMAG00000013141	rad54b	99	82.887	ENSNBRG00000013394	rad54b	99	82.887	Neolamprologus_brichardi
ENSXMAG00000013141	rad54b	100	54.506	ENSNLEG00000003062	-	100	58.209	Nomascus_leucogenys
ENSXMAG00000013141	rad54b	75	61.275	ENSMEUG00000012426	-	71	61.275	Notamacropus_eugenii
ENSXMAG00000013141	rad54b	83	77.273	ENSODEG00000002650	-	96	77.273	Octodon_degus
ENSXMAG00000013141	rad54b	99	56.216	ENSODEG00000019564	-	99	56.216	Octodon_degus
ENSXMAG00000013141	rad54b	99	84.815	ENSONIG00000006067	rad54b	97	84.815	Oreochromis_niloticus
ENSXMAG00000013141	rad54b	87	60.185	ENSOANG00000011348	-	99	60.185	Ornithorhynchus_anatinus
ENSXMAG00000013141	rad54b	99	53.913	ENSOCUG00000016478	-	99	53.913	Oryctolagus_cuniculus
ENSXMAG00000013141	rad54b	99	74.356	ENSORLG00000008918	rad54b	99	84.579	Oryzias_latipes
ENSXMAG00000013141	rad54b	74	84.579	ENSORLG00020012171	rad54b	99	84.579	Oryzias_latipes_hni
ENSXMAG00000013141	rad54b	94	80.680	ENSORLG00015018536	rad54b	88	80.680	Oryzias_latipes_hsok
ENSXMAG00000013141	rad54b	89	83.508	ENSOMEG00000004345	rad54b	99	83.508	Oryzias_melastigma
ENSXMAG00000013141	rad54b	99	53.247	ENSOGAG00000007854	-	100	53.463	Otolemur_garnettii
ENSXMAG00000013141	rad54b	92	60.250	ENSOARG00000007691	-	98	60.250	Ovis_aries
ENSXMAG00000013141	rad54b	99	53.384	ENSPPAG00000029572	-	99	53.384	Pan_paniscus
ENSXMAG00000013141	rad54b	99	55.229	ENSPPRG00000007571	-	99	59.345	Panthera_pardus
ENSXMAG00000013141	rad54b	84	59.345	ENSPTIG00000012670	-	99	59.345	Panthera_tigris_altaica
ENSXMAG00000013141	rad54b	99	54.476	ENSPTRG00000020427	-	99	58.333	Pan_troglodytes
ENSXMAG00000013141	rad54b	99	54.705	ENSPANG00000019566	-	99	54.705	Papio_anubis
ENSXMAG00000013141	rad54b	99	63.587	ENSPKIG00000014974	rad54b	99	63.587	Paramormyrops_kingsleyae
ENSXMAG00000013141	rad54b	91	61.995	ENSPSIG00000002383	-	95	61.995	Pelodiscus_sinensis
ENSXMAG00000013141	rad54b	99	56.236	ENSPEMG00000012133	Rad54b	99	56.236	Peromyscus_maniculatus_bairdii
ENSXMAG00000013141	rad54b	90	58.786	ENSPMAG00000002916	rad54b	98	58.786	Petromyzon_marinus
ENSXMAG00000013141	rad54b	92	59.673	ENSPCIG00000020151	-	92	59.548	Phascolarctos_cinereus
ENSXMAG00000013141	rad54b	99	94.505	ENSPFOG00000023411	rad54b	91	94.505	Poecilia_formosa
ENSXMAG00000013141	rad54b	99	94.505	ENSPLAG00000010430	rad54b	91	94.505	Poecilia_latipinna
ENSXMAG00000013141	rad54b	99	94.872	ENSPMEG00000016873	rad54b	100	89.977	Poecilia_mexicana
ENSXMAG00000013141	rad54b	100	94.595	ENSPREG00000018443	rad54b	100	92.414	Poecilia_reticulata
ENSXMAG00000013141	rad54b	99	54.635	ENSPPYG00000018750	-	99	54.635	Pongo_abelii
ENSXMAG00000013141	rad54b	99	54.940	ENSPCOG00000026845	-	100	58.288	Propithecus_coquereli
ENSXMAG00000013141	rad54b	86	57.937	ENSPVAG00000000261	-	86	58.090	Pteropus_vampyrus
ENSXMAG00000013141	rad54b	93	83.083	ENSPNYG00000018303	rad54b	97	82.979	Pundamilia_nyererei
ENSXMAG00000013141	rad54b	99	65.162	ENSPNAG00000000295	rad54b	99	65.162	Pygocentrus_nattereri
ENSXMAG00000013141	rad54b	99	56.049	ENSRNOG00000039949	Rad54b	99	55.925	Rattus_norvegicus
ENSXMAG00000013141	rad54b	99	54.595	ENSRBIG00000020419	-	99	54.595	Rhinopithecus_bieti
ENSXMAG00000013141	rad54b	99	54.595	ENSRROG00000039897	-	99	54.595	Rhinopithecus_roxellana
ENSXMAG00000013141	rad54b	89	36.137	YBR073W	RDH54	85	35.882	Saccharomyces_cerevisiae
ENSXMAG00000013141	rad54b	99	54.913	ENSSBOG00000028501	-	99	54.913	Saimiri_boliviensis_boliviensis
ENSXMAG00000013141	rad54b	93	58.701	ENSSHAG00000017038	-	87	58.701	Sarcophilus_harrisii
ENSXMAG00000013141	rad54b	66	71.002	ENSSFOG00015008483	rad54b	89	71.002	Scleropages_formosus
ENSXMAG00000013141	rad54b	98	86.486	ENSSMAG00000018659	rad54b	99	79.953	Scophthalmus_maximus
ENSXMAG00000013141	rad54b	95	83.965	ENSSDUG00000001122	rad54b	94	83.563	Seriola_dumerili
ENSXMAG00000013141	rad54b	98	86.486	ENSSLDG00000013787	rad54b	97	84.512	Seriola_lalandi_dorsalis
ENSXMAG00000013141	rad54b	99	58.343	ENSSPUG00000016497	-	100	58.343	Sphenodon_punctatus
ENSXMAG00000013141	rad54b	99	82.293	ENSSPAG00000012800	rad54b	99	82.293	Stegastes_partitus
ENSXMAG00000013141	rad54b	99	55.188	ENSSSCG00000006101	-	99	59.222	Sus_scrofa
ENSXMAG00000013141	rad54b	99	57.622	ENSTGUG00000011880	-	99	57.622	Taeniopygia_guttata
ENSXMAG00000013141	rad54b	94	80.073	ENSTRUG00000010015	rad54b	90	80.073	Takifugu_rubripes
ENSXMAG00000013141	rad54b	99	51.751	ENSTTRG00000006312	-	99	51.751	Tursiops_truncatus
ENSXMAG00000013141	rad54b	99	55.786	ENSUMAG00000016401	-	99	55.786	Ursus_maritimus
ENSXMAG00000013141	rad54b	99	54.863	ENSVPAG00000003157	-	99	54.863	Vicugna_pacos
ENSXMAG00000013141	rad54b	99	50.496	ENSXETG00000025924	rad54b	98	53.933	Xenopus_tropicalis