EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000013416 (Gene tree)
Gene ID: 102219022
Gene Symbol: rab11ba
Alias: rab11b|wu:fb07g11|zgc:55760
Full Name: ras-related protein Rab-11B-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 3468 bases
Position: chr9:20687834-20691301
Accession: 102219022
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000013441	MMR_HSR1	PF01926.23	4.2e-07	1	1
ENSXMAP00000040583	MMR_HSR1	PF01926.23	5.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000013457	-	657	XM_005795580	ENSXMAP00000013441	218 (aa)	XP_005795637	M4AG47
ENSXMAT00000039289	-	880	-	ENSXMAP00000040583	249 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000013416's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000013416's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000013416	rab11ba	100	94.495	ENSG00000185236	RAB11B	100	97.826	Homo_sapiens
ENSXMAG00000013416	rab11ba	99	93.607	ENSAMEG00000004955	RAB11B	99	93.607	Ailuropoda_melanoleuca
ENSXMAG00000013416	rab11ba	78	97.647	ENSACIG00000024374	rab11ba	72	96.000	Amphilophus_citrinellus
ENSXMAG00000013416	rab11ba	100	97.248	ENSAOCG00000018050	rab11ba	100	97.248	Amphiprion_ocellaris
ENSXMAG00000013416	rab11ba	100	96.789	ENSAPEG00000009177	rab11ba	100	96.789	Amphiprion_percula
ENSXMAG00000013416	rab11ba	100	99.083	ENSATEG00000023730	rab11ba	100	99.083	Anabas_testudineus
ENSXMAG00000013416	rab11ba	100	94.495	ENSANAG00000037616	RAB11B	97	97.688	Aotus_nancymaae
ENSXMAG00000013416	rab11ba	100	96.789	ENSACLG00000005420	rab11ba	100	96.789	Astatotilapia_calliptera
ENSXMAG00000013416	rab11ba	93	88.670	ENSACLG00000018852	-	92	88.670	Astatotilapia_calliptera
ENSXMAG00000013416	rab11ba	99	78.341	WBGene00004274	rab-11.1	99	78.341	Caenorhabditis_elegans
ENSXMAG00000013416	rab11ba	100	94.495	ENSCJAG00000010778	RAB11B	100	94.495	Callithrix_jacchus
ENSXMAG00000013416	rab11ba	100	94.495	ENSCAFG00000032060	RAB11B	100	94.495	Canis_familiaris
ENSXMAG00000013416	rab11ba	100	94.495	ENSCAFG00020022184	RAB11B	100	94.495	Canis_lupus_dingo
ENSXMAG00000013416	rab11ba	100	94.495	ENSTSYG00000014758	RAB11B	100	94.495	Carlito_syrichta
ENSXMAG00000013416	rab11ba	100	94.037	ENSCPOG00000030154	RAB11B	100	94.037	Cavia_porcellus
ENSXMAG00000013416	rab11ba	100	94.495	ENSCCAG00000031042	RAB11B	100	94.495	Cebus_capucinus
ENSXMAG00000013416	rab11ba	100	94.495	ENSCLAG00000003207	RAB11B	100	94.495	Chinchilla_lanigera
ENSXMAG00000013416	rab11ba	100	94.495	ENSCSAG00000008024	RAB11B	100	94.495	Chlorocebus_sabaeus
ENSXMAG00000013416	rab11ba	100	80.275	ENSCHOG00000013525	RAB11B	100	80.275	Choloepus_hoffmanni
ENSXMAG00000013416	rab11ba	100	82.110	ENSCING00000009526	-	100	82.110	Ciona_intestinalis
ENSXMAG00000013416	rab11ba	100	94.495	ENSCANG00000040517	RAB11B	100	94.495	Colobus_angolensis_palliatus
ENSXMAG00000013416	rab11ba	100	94.495	ENSCGRG00001013827	Rab11b	100	94.495	Cricetulus_griseus_chok1gshd
ENSXMAG00000013416	rab11ba	100	94.495	ENSCGRG00000010967	Rab11b	100	94.495	Cricetulus_griseus_crigri
ENSXMAG00000013416	rab11ba	100	96.789	ENSCSEG00000007121	rab11ba	84	96.789	Cynoglossus_semilaevis
ENSXMAG00000013416	rab11ba	100	93.578	ENSDARG00000041878	rab11ba	100	93.578	Danio_rerio
ENSXMAG00000013416	rab11ba	100	94.495	ENSDNOG00000014618	RAB11B	97	94.495	Dasypus_novemcinctus
ENSXMAG00000013416	rab11ba	100	92.661	ENSDNOG00000004134	-	100	92.661	Dasypus_novemcinctus
ENSXMAG00000013416	rab11ba	100	94.495	ENSDORG00000006304	Rab11b	100	94.495	Dipodomys_ordii
ENSXMAG00000013416	rab11ba	100	90.367	ENSEBUG00000011775	rab11ba	99	90.244	Eptatretus_burgeri
ENSXMAG00000013416	rab11ba	100	80.734	ENSEBUG00000015447	-	100	80.734	Eptatretus_burgeri
ENSXMAG00000013416	rab11ba	66	98.601	ENSEEUG00000009165	-	100	98.601	Erinaceus_europaeus
ENSXMAG00000013416	rab11ba	89	91.753	ENSELUG00000019240	-	99	91.753	Esox_lucius
ENSXMAG00000013416	rab11ba	100	94.037	ENSFCAG00000015216	RAB11B	100	94.037	Felis_catus
ENSXMAG00000013416	rab11ba	100	94.037	ENSFDAG00000019872	RAB11B	100	94.037	Fukomys_damarensis
ENSXMAG00000013416	rab11ba	100	98.624	ENSFHEG00000022642	rab11ba	100	98.624	Fundulus_heteroclitus
ENSXMAG00000013416	rab11ba	100	95.413	ENSGMOG00000007390	rab11ba	99	95.413	Gadus_morhua
ENSXMAG00000013416	rab11ba	100	100.000	ENSGAFG00000005679	rab11ba	100	100.000	Gambusia_affinis
ENSXMAG00000013416	rab11ba	100	95.413	ENSGAGG00000012557	-	100	95.413	Gopherus_agassizii
ENSXMAG00000013416	rab11ba	100	94.495	ENSHGLG00000014984	RAB11B	100	94.495	Heterocephalus_glaber_female
ENSXMAG00000013416	rab11ba	100	94.495	ENSHGLG00100003638	RAB11B	100	94.495	Heterocephalus_glaber_male
ENSXMAG00000013416	rab11ba	100	94.495	ENSSTOG00000031571	RAB11B	100	94.495	Ictidomys_tridecemlineatus
ENSXMAG00000013416	rab11ba	100	94.495	ENSJJAG00000018891	Rab11b	100	94.495	Jaculus_jaculus
ENSXMAG00000013416	rab11ba	100	99.541	ENSKMAG00000006082	-	100	99.541	Kryptolebias_marmoratus
ENSXMAG00000013416	rab11ba	100	95.872	ENSLBEG00000006087	rab11ba	100	95.872	Labrus_bergylta
ENSXMAG00000013416	rab11ba	78	98.824	ENSLACG00000016974	RAB11B	99	98.830	Latimeria_chalumnae
ENSXMAG00000013416	rab11ba	100	94.495	ENSLAFG00000013598	RAB11B	100	94.495	Loxodonta_africana
ENSXMAG00000013416	rab11ba	100	94.495	ENSMNEG00000039759	-	100	94.495	Macaca_nemestrina
ENSXMAG00000013416	rab11ba	100	99.083	ENSMAMG00000018556	rab11ba	100	99.083	Mastacembelus_armatus
ENSXMAG00000013416	rab11ba	93	88.670	ENSMZEG00005019251	-	92	88.670	Maylandia_zebra
ENSXMAG00000013416	rab11ba	100	96.789	ENSMZEG00005010947	rab11ba	100	96.789	Maylandia_zebra
ENSXMAG00000013416	rab11ba	100	94.954	ENSMAUG00000021579	Rab11b	100	94.954	Mesocricetus_auratus
ENSXMAG00000013416	rab11ba	100	94.037	ENSMOCG00000012667	Rab11b	100	94.037	Microtus_ochrogaster
ENSXMAG00000013416	rab11ba	100	94.954	ENSMALG00000021949	rab11ba	100	94.954	Monopterus_albus
ENSXMAG00000013416	rab11ba	100	94.495	MGP_CAROLIEiJ_G0021415	Rab11b	99	96.622	Mus_caroli
ENSXMAG00000013416	rab11ba	100	95.413	ENSMUSG00000077450	Rab11b	99	96.622	Mus_musculus
ENSXMAG00000013416	rab11ba	100	94.495	MGP_PahariEiJ_G0020420	Rab11b	100	94.495	Mus_pahari
ENSXMAG00000013416	rab11ba	100	94.495	MGP_SPRETEiJ_G0022327	Rab11b	99	96.622	Mus_spretus
ENSXMAG00000013416	rab11ba	100	94.037	ENSMPUG00000007263	RAB11B	100	94.037	Mustela_putorius_furo
ENSXMAG00000013416	rab11ba	100	90.045	ENSMLUG00000002308	-	100	90.045	Myotis_lucifugus
ENSXMAG00000013416	rab11ba	100	94.495	ENSNGAG00000015757	Rab11b	100	94.495	Nannospalax_galili
ENSXMAG00000013416	rab11ba	100	97.248	ENSNBRG00000023898	rab11ba	84	97.248	Neolamprologus_brichardi
ENSXMAG00000013416	rab11ba	100	94.495	ENSNLEG00000001733	RAB11B	100	94.495	Nomascus_leucogenys
ENSXMAG00000013416	rab11ba	100	94.495	ENSODEG00000011371	RAB11B	100	94.495	Octodon_degus
ENSXMAG00000013416	rab11ba	100	97.706	ENSONIG00000002535	rab11ba	100	97.706	Oreochromis_niloticus
ENSXMAG00000013416	rab11ba	74	96.273	ENSOCUG00000028208	RAB11B	64	96.894	Oryctolagus_cuniculus
ENSXMAG00000013416	rab11ba	99	98.618	ENSORLG00000015307	rab11ba	99	98.618	Oryzias_latipes
ENSXMAG00000013416	rab11ba	99	98.618	ENSORLG00020020816	rab11ba	99	98.618	Oryzias_latipes_hni
ENSXMAG00000013416	rab11ba	99	98.611	ENSORLG00015016946	rab11ba	81	98.611	Oryzias_latipes_hsok
ENSXMAG00000013416	rab11ba	99	98.618	ENSOMEG00000002581	rab11ba	99	98.618	Oryzias_melastigma
ENSXMAG00000013416	rab11ba	100	94.495	ENSOGAG00000003227	RAB11B	99	94.495	Otolemur_garnettii
ENSXMAG00000013416	rab11ba	100	94.495	ENSOARG00000003801	RAB11B	97	94.495	Ovis_aries
ENSXMAG00000013416	rab11ba	80	96.552	ENSPPRG00000010160	RAB11B	85	97.126	Panthera_pardus
ENSXMAG00000013416	rab11ba	100	94.495	ENSPEMG00000014536	Rab11b	100	94.495	Peromyscus_maniculatus_bairdii
ENSXMAG00000013416	rab11ba	94	79.524	ENSPMAG00000009335	-	100	79.524	Petromyzon_marinus
ENSXMAG00000013416	rab11ba	100	99.541	ENSPFOG00000006159	rab11ba	100	99.541	Poecilia_formosa
ENSXMAG00000013416	rab11ba	100	99.541	ENSPLAG00000014243	rab11ba	100	99.541	Poecilia_latipinna
ENSXMAG00000013416	rab11ba	100	99.541	ENSPMEG00000007917	rab11ba	75	99.541	Poecilia_mexicana
ENSXMAG00000013416	rab11ba	100	99.541	ENSPREG00000006357	rab11ba	78	99.541	Poecilia_reticulata
ENSXMAG00000013416	rab11ba	100	94.495	ENSPPYG00000009504	RAB11B	100	94.495	Pongo_abelii
ENSXMAG00000013416	rab11ba	100	85.780	ENSPCAG00000016118	RAB11B	100	85.780	Procavia_capensis
ENSXMAG00000013416	rab11ba	67	96.575	ENSPCOG00000008655	-	100	96.575	Propithecus_coquereli
ENSXMAG00000013416	rab11ba	100	94.495	ENSPCOG00000028053	RAB11B	100	94.495	Propithecus_coquereli
ENSXMAG00000013416	rab11ba	100	94.495	ENSPVAG00000009645	RAB11B	100	94.495	Pteropus_vampyrus
ENSXMAG00000013416	rab11ba	100	96.789	ENSPNYG00000019644	rab11ba	100	96.789	Pundamilia_nyererei
ENSXMAG00000013416	rab11ba	100	75.000	ENSPNYG00000023810	-	97	75.000	Pundamilia_nyererei
ENSXMAG00000013416	rab11ba	100	94.495	ENSPNAG00000020475	rab11ba	100	94.495	Pygocentrus_nattereri
ENSXMAG00000013416	rab11ba	100	94.954	ENSPNAG00000006431	-	100	94.954	Pygocentrus_nattereri
ENSXMAG00000013416	rab11ba	100	94.495	ENSRNOG00000007648	Rab11b	100	94.495	Rattus_norvegicus
ENSXMAG00000013416	rab11ba	100	94.495	ENSSBOG00000035094	RAB11B	97	97.688	Saimiri_boliviensis_boliviensis
ENSXMAG00000013416	rab11ba	100	99.541	ENSSDUG00000002965	rab11ba	100	99.541	Seriola_dumerili
ENSXMAG00000013416	rab11ba	100	99.541	ENSSLDG00000005221	rab11ba	100	99.541	Seriola_lalandi_dorsalis
ENSXMAG00000013416	rab11ba	100	97.706	ENSSPAG00000017313	rab11ba	100	97.706	Stegastes_partitus
ENSXMAG00000013416	rab11ba	100	94.495	ENSSSCG00000013600	RAB11B	100	94.495	Sus_scrofa
ENSXMAG00000013416	rab11ba	59	98.450	ENSTBEG00000014750	-	100	98.450	Tupaia_belangeri
ENSXMAG00000013416	rab11ba	100	94.495	ENSTTRG00000009758	RAB11B	100	94.495	Tursiops_truncatus
ENSXMAG00000013416	rab11ba	94	76.098	ENSUMAG00000014594	RAB11B	97	76.098	Ursus_maritimus
ENSXMAG00000013416	rab11ba	100	94.495	ENSVVUG00000025210	RAB11B	100	94.495	Vulpes_vulpes
ENSXMAG00000013416	rab11ba	100	94.037	ENSXETG00000021890	rab11b.2	99	94.037	Xenopus_tropicalis
ENSXMAG00000013416	rab11ba	61	99.248	ENSXCOG00000009194	-	98	99.248	Xiphophorus_couchianus