EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000013452 (Gene tree)
Gene ID: 102218128
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 5267 bases
Position: chr7:9552581-9557847
Accession: 102218128
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000013486	Smg4_UPF3	PF03467.15	2.2e-53	1	1
ENSXMAP00000023766	Smg4_UPF3	PF03467.15	9.2e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000024015	-	1281	-	ENSXMAP00000023766	426 (aa)	-	-
ENSXMAT00000013502	-	1585	XM_005810812	ENSXMAP00000013486	464 (aa)	XP_005810869	M4AG92

Gene Model

Click here to download ENSXMAG00000013452's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000013452's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000013452	upf3a	90	56.818	ENSG00000169062	UPF3A	92	56.818	Homo_sapiens
ENSXMAG00000013452	upf3a	88	52.064	ENSAPOG00000012775	upf3b	61	72.667	Acanthochromis_polyacanthus
ENSXMAG00000013452	upf3a	100	90.948	ENSAPOG00000013484	upf3a	100	90.948	Acanthochromis_polyacanthus
ENSXMAG00000013452	upf3a	82	52.323	ENSAMEG00000000163	UPF3B	50	68.153	Ailuropoda_melanoleuca
ENSXMAG00000013452	upf3a	84	59.069	ENSAMEG00000004259	UPF3A	93	57.009	Ailuropoda_melanoleuca
ENSXMAG00000013452	upf3a	84	48.975	ENSACIG00000013582	upf3b	93	48.724	Amphilophus_citrinellus
ENSXMAG00000013452	upf3a	98	85.954	ENSACIG00000020468	upf3a	99	85.954	Amphilophus_citrinellus
ENSXMAG00000013452	upf3a	100	91.810	ENSAOCG00000020784	upf3a	100	91.810	Amphiprion_ocellaris
ENSXMAG00000013452	upf3a	65	59.873	ENSAOCG00000000706	upf3b	93	49.083	Amphiprion_ocellaris
ENSXMAG00000013452	upf3a	100	91.810	ENSAPEG00000003519	upf3a	100	91.810	Amphiprion_percula
ENSXMAG00000013452	upf3a	100	89.224	ENSATEG00000005843	upf3a	100	89.224	Anabas_testudineus
ENSXMAG00000013452	upf3a	83	53.682	ENSATEG00000018742	upf3b	58	73.333	Anabas_testudineus
ENSXMAG00000013452	upf3a	82	66.667	ENSACAG00000001540	UPF3A	94	66.919	Anolis_carolinensis
ENSXMAG00000013452	upf3a	82	52.078	ENSANAG00000021894	-	77	70.303	Aotus_nancymaae
ENSXMAG00000013452	upf3a	83	46.135	ENSANAG00000025598	-	65	68.116	Aotus_nancymaae
ENSXMAG00000013452	upf3a	92	54.255	ENSANAG00000021713	UPF3A	97	54.255	Aotus_nancymaae
ENSXMAG00000013452	upf3a	100	86.722	ENSACLG00000026274	upf3a	100	86.722	Astatotilapia_calliptera
ENSXMAG00000013452	upf3a	99	79.914	ENSAMXG00000002608	upf3a	100	79.914	Astyanax_mexicanus
ENSXMAG00000013452	upf3a	82	51.942	ENSCJAG00000004975	UPF3B	77	69.697	Callithrix_jacchus
ENSXMAG00000013452	upf3a	91	56.081	ENSCJAG00000019102	UPF3A	95	55.459	Callithrix_jacchus
ENSXMAG00000013452	upf3a	84	58.272	ENSCAFG00000006504	UPF3A	86	44.878	Canis_familiaris
ENSXMAG00000013452	upf3a	82	46.250	ENSCAFG00020004074	UPF3B	64	73.973	Canis_lupus_dingo
ENSXMAG00000013452	upf3a	84	58.809	ENSCAFG00020014268	UPF3A	84	45.343	Canis_lupus_dingo
ENSXMAG00000013452	upf3a	82	45.843	ENSCHIG00000000247	-	60	68.153	Capra_hircus
ENSXMAG00000013452	upf3a	83	57.323	ENSCHIG00000008682	UPF3A	85	54.503	Capra_hircus
ENSXMAG00000013452	upf3a	82	45.843	ENSCHIG00000018011	-	61	68.153	Capra_hircus
ENSXMAG00000013452	upf3a	82	52.184	ENSTSYG00000014690	UPF3B	76	65.294	Carlito_syrichta
ENSXMAG00000013452	upf3a	75	53.351	ENSTSYG00000001918	UPF3A	99	53.351	Carlito_syrichta
ENSXMAG00000013452	upf3a	70	60.661	ENSCPOG00000006824	UPF3A	77	60.661	Cavia_porcellus
ENSXMAG00000013452	upf3a	93	56.957	ENSCCAG00000018406	UPF3A	96	56.957	Cebus_capucinus
ENSXMAG00000013452	upf3a	81	37.275	ENSCCAG00000029813	-	52	58.861	Cebus_capucinus
ENSXMAG00000013452	upf3a	88	58.588	ENSCATG00000029733	UPF3A	95	57.143	Cercocebus_atys
ENSXMAG00000013452	upf3a	88	57.534	ENSCSAG00000017388	UPF3A	95	56.182	Chlorocebus_sabaeus
ENSXMAG00000013452	upf3a	82	46.000	ENSCPBG00000020685	UPF3B	57	72.667	Chrysemys_picta_bellii
ENSXMAG00000013452	upf3a	80	59.517	ENSCGRG00001017387	Upf3a	87	58.221	Cricetulus_griseus_chok1gshd
ENSXMAG00000013452	upf3a	81	52.736	ENSCSEG00000002046	upf3b	54	68.790	Cynoglossus_semilaevis
ENSXMAG00000013452	upf3a	99	85.745	ENSCSEG00000005106	upf3a	99	85.745	Cynoglossus_semilaevis
ENSXMAG00000013452	upf3a	100	91.810	ENSCVAG00000022333	upf3a	100	91.810	Cyprinodon_variegatus
ENSXMAG00000013452	upf3a	84	43.287	ENSCVAG00000005030	upf3b	59	68.153	Cyprinodon_variegatus
ENSXMAG00000013452	upf3a	83	49.882	ENSDARG00000000489	upf3b	61	67.702	Danio_rerio
ENSXMAG00000013452	upf3a	99	78.618	ENSDARG00000069297	upf3a	100	78.618	Danio_rerio
ENSXMAG00000013452	upf3a	77	63.587	ENSDNOG00000034391	UPF3A	83	63.415	Dasypus_novemcinctus
ENSXMAG00000013452	upf3a	82	56.927	ENSETEG00000010110	UPF3A	94	52.954	Echinops_telfairi
ENSXMAG00000013452	upf3a	88	57.611	ENSEASG00005021884	UPF3A	89	57.611	Equus_asinus_asinus
ENSXMAG00000013452	upf3a	82	49.005	ENSEASG00005012919	UPF3B	62	71.014	Equus_asinus_asinus
ENSXMAG00000013452	upf3a	88	57.611	ENSECAG00000017141	UPF3A	89	57.611	Equus_caballus
ENSXMAG00000013452	upf3a	82	49.005	ENSECAG00000016947	UPF3B	62	64.286	Equus_caballus
ENSXMAG00000013452	upf3a	98	79.870	ENSELUG00000011050	upf3a	99	79.698	Esox_lucius
ENSXMAG00000013452	upf3a	88	58.028	ENSFCAG00000014602	UPF3A	92	57.079	Felis_catus
ENSXMAG00000013452	upf3a	57	68.485	ENSFALG00000001569	UPF3B	54	68.047	Ficedula_albicollis
ENSXMAG00000013452	upf3a	69	79.141	ENSGMOG00000019615	upf3a	100	74.251	Gadus_morhua
ENSXMAG00000013452	upf3a	50	66.013	ENSGAFG00000000829	upf3b	60	70.000	Gambusia_affinis
ENSXMAG00000013452	upf3a	100	98.707	ENSGAFG00000021170	upf3a	100	98.707	Gambusia_affinis
ENSXMAG00000013452	upf3a	82	50.000	ENSGACG00000017435	upf3b	65	67.516	Gasterosteus_aculeatus
ENSXMAG00000013452	upf3a	69	82.243	ENSGACG00000001972	upf3a	100	82.243	Gasterosteus_aculeatus
ENSXMAG00000013452	upf3a	82	46.192	ENSGAGG00000001219	UPF3B	57	70.064	Gopherus_agassizii
ENSXMAG00000013452	upf3a	88	46.135	ENSGGOG00000043074	-	82	46.954	Gorilla_gorilla
ENSXMAG00000013452	upf3a	90	57.541	ENSGGOG00000015428	UPF3A	92	57.273	Gorilla_gorilla
ENSXMAG00000013452	upf3a	82	48.724	ENSGGOG00000041219	-	87	47.194	Gorilla_gorilla
ENSXMAG00000013452	upf3a	100	89.871	ENSHBUG00000011325	upf3a	99	90.065	Haplochromis_burtoni
ENSXMAG00000013452	upf3a	76	56.868	ENSHGLG00000001544	UPF3A	86	56.868	Heterocephalus_glaber_female
ENSXMAG00000013452	upf3a	76	56.868	ENSHGLG00100013244	UPF3A	86	56.868	Heterocephalus_glaber_male
ENSXMAG00000013452	upf3a	94	79.545	ENSHCOG00000013985	upf3a	94	80.000	Hippocampus_comes
ENSXMAG00000013452	upf3a	88	52.064	ENSHCOG00000017004	upf3b	64	68.790	Hippocampus_comes
ENSXMAG00000013452	upf3a	50	68.692	ENSIPUG00000019249	upf3b	57	71.429	Ictalurus_punctatus
ENSXMAG00000013452	upf3a	99	78.402	ENSIPUG00000023450	upf3a	100	78.402	Ictalurus_punctatus
ENSXMAG00000013452	upf3a	88	48.519	ENSKMAG00000020300	upf3b	62	70.000	Kryptolebias_marmoratus
ENSXMAG00000013452	upf3a	100	90.323	ENSKMAG00000004381	upf3a	100	90.323	Kryptolebias_marmoratus
ENSXMAG00000013452	upf3a	98	83.333	ENSLBEG00000021570	upf3a	100	82.533	Labrus_bergylta
ENSXMAG00000013452	upf3a	55	53.125	ENSLACG00000006645	UPF3A	66	85.714	Latimeria_chalumnae
ENSXMAG00000013452	upf3a	59	65.000	ENSLACG00000008691	UPF3B	61	76.000	Latimeria_chalumnae
ENSXMAG00000013452	upf3a	50	70.561	ENSLOCG00000015238	upf3b	58	71.429	Lepisosteus_oculatus
ENSXMAG00000013452	upf3a	97	74.292	ENSLOCG00000002665	upf3a	98	74.292	Lepisosteus_oculatus
ENSXMAG00000013452	upf3a	65	79.021	ENSLAFG00000023358	UPF3A	65	79.021	Loxodonta_africana
ENSXMAG00000013452	upf3a	88	57.210	ENSMFAG00000045016	UPF3A	95	55.381	Macaca_fascicularis
ENSXMAG00000013452	upf3a	87	57.664	ENSMMUG00000007449	UPF3A	95	56.720	Macaca_mulatta
ENSXMAG00000013452	upf3a	85	58.647	ENSMNEG00000036402	UPF3A	83	59.102	Macaca_nemestrina
ENSXMAG00000013452	upf3a	80	60.477	ENSMLEG00000014726	UPF3A	94	58.603	Mandrillus_leucophaeus
ENSXMAG00000013452	upf3a	58	59.067	ENSMAMG00000020069	upf3b	63	65.882	Mastacembelus_armatus
ENSXMAG00000013452	upf3a	100	85.417	ENSMAMG00000018364	upf3a	100	85.417	Mastacembelus_armatus
ENSXMAG00000013452	upf3a	100	86.722	ENSMZEG00005021571	upf3a	100	86.722	Maylandia_zebra
ENSXMAG00000013452	upf3a	85	63.814	ENSMGAG00000014837	UPF3A	99	63.902	Meleagris_gallopavo
ENSXMAG00000013452	upf3a	56	70.667	ENSMAUG00000008705	Upf3b	51	70.667	Mesocricetus_auratus
ENSXMAG00000013452	upf3a	100	82.744	ENSMMOG00000019751	upf3a	100	82.744	Mola_mola
ENSXMAG00000013452	upf3a	85	65.770	ENSMODG00000003159	UPF3A	95	66.176	Monodelphis_domestica
ENSXMAG00000013452	upf3a	81	48.058	ENSMODG00000010232	UPF3B	57	73.288	Monodelphis_domestica
ENSXMAG00000013452	upf3a	56	60.000	ENSMALG00000008042	upf3b	61	70.667	Monopterus_albus
ENSXMAG00000013452	upf3a	80	61.333	MGP_PahariEiJ_G0021311	Upf3a	87	61.333	Mus_pahari
ENSXMAG00000013452	upf3a	82	51.834	ENSMPUG00000001531	UPF3B	53	68.153	Mustela_putorius_furo
ENSXMAG00000013452	upf3a	89	56.720	ENSMPUG00000009139	UPF3A	90	56.720	Mustela_putorius_furo
ENSXMAG00000013452	upf3a	80	61.125	ENSMLUG00000015905	UPF3A	92	61.125	Myotis_lucifugus
ENSXMAG00000013452	upf3a	84	56.188	ENSNGAG00000019314	Upf3a	95	56.188	Nannospalax_galili
ENSXMAG00000013452	upf3a	100	90.086	ENSNBRG00000000828	upf3a	100	90.086	Neolamprologus_brichardi
ENSXMAG00000013452	upf3a	84	60.406	ENSNLEG00000007563	UPF3A	92	57.143	Nomascus_leucogenys
ENSXMAG00000013452	upf3a	100	90.343	ENSONIG00000006817	upf3a	100	90.343	Oreochromis_niloticus
ENSXMAG00000013452	upf3a	83	46.479	ENSOANG00000002594	-	70	73.333	Ornithorhynchus_anatinus
ENSXMAG00000013452	upf3a	77	56.250	ENSOANG00000006985	-	95	56.250	Ornithorhynchus_anatinus
ENSXMAG00000013452	upf3a	100	84.615	ENSORLG00000010911	upf3a	100	84.615	Oryzias_latipes
ENSXMAG00000013452	upf3a	84	46.868	ENSORLG00000001026	upf3b	63	64.331	Oryzias_latipes
ENSXMAG00000013452	upf3a	84	40.984	ENSORLG00020003758	upf3b	60	64.968	Oryzias_latipes_hni
ENSXMAG00000013452	upf3a	100	84.052	ENSORLG00020014317	upf3a	100	84.052	Oryzias_latipes_hni
ENSXMAG00000013452	upf3a	84	41.452	ENSORLG00015012954	upf3b	61	68.000	Oryzias_latipes_hsok
ENSXMAG00000013452	upf3a	100	84.483	ENSORLG00015017339	upf3a	58	84.483	Oryzias_latipes_hsok
ENSXMAG00000013452	upf3a	100	85.560	ENSOMEG00000014425	upf3a	100	85.560	Oryzias_melastigma
ENSXMAG00000013452	upf3a	82	41.866	ENSOMEG00000014736	upf3b	60	64.331	Oryzias_melastigma
ENSXMAG00000013452	upf3a	74	60.548	ENSOGAG00000004788	UPF3A	88	60.822	Otolemur_garnettii
ENSXMAG00000013452	upf3a	82	44.175	ENSOGAG00000033003	-	52	65.823	Otolemur_garnettii
ENSXMAG00000013452	upf3a	82	45.519	ENSOARG00000016051	-	60	66.875	Ovis_aries
ENSXMAG00000013452	upf3a	83	58.750	ENSOARG00000009004	UPF3A	84	58.750	Ovis_aries
ENSXMAG00000013452	upf3a	90	56.591	ENSPPAG00000042267	UPF3A	92	56.591	Pan_paniscus
ENSXMAG00000013452	upf3a	90	56.180	ENSPPRG00000025062	UPF3A	92	56.180	Panthera_pardus
ENSXMAG00000013452	upf3a	90	56.591	ENSPTRG00000006073	UPF3A	92	56.591	Pan_troglodytes
ENSXMAG00000013452	upf3a	82	48.724	ENSPTRG00000041187	-	87	45.408	Pan_troglodytes
ENSXMAG00000013452	upf3a	82	45.153	ENSPTRG00000051640	-	87	43.367	Pan_troglodytes
ENSXMAG00000013452	upf3a	88	58.824	ENSPANG00000004346	UPF3A	90	58.962	Papio_anubis
ENSXMAG00000013452	upf3a	88	74.396	ENSPKIG00000004422	upf3a	98	67.917	Paramormyrops_kingsleyae
ENSXMAG00000013452	upf3a	91	49.224	ENSPKIG00000019226	upf3b	93	64.474	Paramormyrops_kingsleyae
ENSXMAG00000013452	upf3a	83	68.010	ENSPSIG00000007468	UPF3A	96	68.010	Pelodiscus_sinensis
ENSXMAG00000013452	upf3a	100	80.619	ENSPMGG00000012696	upf3a	100	80.619	Periophthalmus_magnuspinnatus
ENSXMAG00000013452	upf3a	81	59.067	ENSPEMG00000019968	-	91	59.067	Peromyscus_maniculatus_bairdii
ENSXMAG00000013452	upf3a	86	47.857	ENSPCIG00000028914	UPF3B	56	68.862	Phascolarctos_cinereus
ENSXMAG00000013452	upf3a	73	68.282	ENSPCIG00000019590	-	90	65.534	Phascolarctos_cinereus
ENSXMAG00000013452	upf3a	100	98.491	ENSPFOG00000013222	upf3a	100	98.491	Poecilia_formosa
ENSXMAG00000013452	upf3a	98	98.031	ENSPLAG00000011960	upf3a	100	98.031	Poecilia_latipinna
ENSXMAG00000013452	upf3a	85	44.526	ENSPLAG00000019922	upf3b	60	70.667	Poecilia_latipinna
ENSXMAG00000013452	upf3a	85	44.526	ENSPLAG00000005105	upf3b	60	70.667	Poecilia_latipinna
ENSXMAG00000013452	upf3a	100	94.824	ENSPMEG00000000836	upf3a	100	94.824	Poecilia_mexicana
ENSXMAG00000013452	upf3a	85	44.526	ENSPMEG00000023532	upf3b	60	70.667	Poecilia_mexicana
ENSXMAG00000013452	upf3a	90	56.591	ENSPPYG00000005536	UPF3A	92	56.591	Pongo_abelii
ENSXMAG00000013452	upf3a	85	46.682	ENSPCOG00000021960	UPF3B	51	70.732	Propithecus_coquereli
ENSXMAG00000013452	upf3a	82	58.779	ENSPVAG00000005656	UPF3A	82	57.722	Pteropus_vampyrus
ENSXMAG00000013452	upf3a	100	86.722	ENSPNYG00000011289	upf3a	100	86.722	Pundamilia_nyererei
ENSXMAG00000013452	upf3a	84	51.765	ENSPNAG00000021528	upf3b	59	73.377	Pygocentrus_nattereri
ENSXMAG00000013452	upf3a	99	78.618	ENSPNAG00000019532	upf3a	100	78.618	Pygocentrus_nattereri
ENSXMAG00000013452	upf3a	71	64.242	ENSRNOG00000017397	Upf3a	81	64.242	Rattus_norvegicus
ENSXMAG00000013452	upf3a	80	60.317	ENSRBIG00000034007	UPF3A	91	58.458	Rhinopithecus_bieti
ENSXMAG00000013452	upf3a	80	60.638	ENSRROG00000012212	UPF3A	85	58.750	Rhinopithecus_roxellana
ENSXMAG00000013452	upf3a	75	57.660	ENSSBOG00000029989	UPF3A	84	56.836	Saimiri_boliviensis_boliviensis
ENSXMAG00000013452	upf3a	82	52.798	ENSSBOG00000019740	UPF3B	78	71.166	Saimiri_boliviensis_boliviensis
ENSXMAG00000013452	upf3a	81	50.000	ENSSHAG00000008634	UPF3B	52	69.935	Sarcophilus_harrisii
ENSXMAG00000013452	upf3a	87	65.144	ENSSHAG00000009895	UPF3A	96	66.749	Sarcophilus_harrisii
ENSXMAG00000013452	upf3a	99	69.828	ENSSFOG00015021851	upf3a	100	69.704	Scleropages_formosus
ENSXMAG00000013452	upf3a	100	80.285	ENSSMAG00000003858	upf3a	100	81.504	Scophthalmus_maximus
ENSXMAG00000013452	upf3a	82	52.771	ENSSMAG00000012913	upf3b	54	71.951	Scophthalmus_maximus
ENSXMAG00000013452	upf3a	100	86.667	ENSSDUG00000009680	upf3a	100	86.667	Seriola_dumerili
ENSXMAG00000013452	upf3a	84	48.747	ENSSLDG00000003130	upf3b	62	72.000	Seriola_lalandi_dorsalis
ENSXMAG00000013452	upf3a	100	89.655	ENSSLDG00000009700	upf3a	100	89.655	Seriola_lalandi_dorsalis
ENSXMAG00000013452	upf3a	79	50.260	ENSSARG00000007262	UPF3A	92	48.958	Sorex_araneus
ENSXMAG00000013452	upf3a	58	73.333	ENSSPUG00000013082	UPF3B	61	73.333	Sphenodon_punctatus
ENSXMAG00000013452	upf3a	50	69.262	ENSSPAG00000009989	upf3b	61	68.153	Stegastes_partitus
ENSXMAG00000013452	upf3a	100	91.164	ENSSPAG00000007938	upf3a	100	91.164	Stegastes_partitus
ENSXMAG00000013452	upf3a	81	59.079	ENSSSCG00000024679	UPF3A	85	56.308	Sus_scrofa
ENSXMAG00000013452	upf3a	83	67.929	ENSTGUG00000009493	UPF3A	100	68.514	Taeniopygia_guttata
ENSXMAG00000013452	upf3a	81	48.232	ENSTGUG00000003413	UPF3B	59	71.812	Taeniopygia_guttata
ENSXMAG00000013452	upf3a	100	81.466	ENSTRUG00000012730	upf3a	100	81.466	Takifugu_rubripes
ENSXMAG00000013452	upf3a	84	50.000	ENSTRUG00000010645	upf3b	57	68.153	Takifugu_rubripes
ENSXMAG00000013452	upf3a	83	74.873	ENSTNIG00000014973	upf3a	100	74.365	Tetraodon_nigroviridis
ENSXMAG00000013452	upf3a	73	56.056	ENSTTRG00000015414	UPF3A	74	55.618	Tursiops_truncatus
ENSXMAG00000013452	upf3a	80	58.747	ENSVPAG00000003525	UPF3A	94	58.747	Vicugna_pacos
ENSXMAG00000013452	upf3a	82	46.250	ENSVVUG00000011594	UPF3B	77	70.303	Vulpes_vulpes
ENSXMAG00000013452	upf3a	84	57.107	ENSVVUG00000013538	UPF3A	84	44.000	Vulpes_vulpes
ENSXMAG00000013452	upf3a	84	59.137	ENSXETG00000002572	upf3a	93	59.137	Xenopus_tropicalis
ENSXMAG00000013452	upf3a	83	46.914	ENSXETG00000007440	upf3b	71	72.561	Xenopus_tropicalis
ENSXMAG00000013452	upf3a	100	93.864	ENSXCOG00000018591	upf3a	100	93.864	Xiphophorus_couchianus
ENSXMAG00000013452	upf3a	81	45.823	ENSXMAG00000013680	upf3b	60	70.000	Xiphophorus_maculatus