EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000013499 (Gene tree)
Gene ID: 102231063
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 16495 bases
Position: chr3:11574402-11590896
Accession: 102231063
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000039776	EST1	PF10374.9	7.8e-25	1	1
ENSXMAP00000013547	EST1	PF10374.9	5.9e-24	1	1
ENSXMAP00000013547	EST1_DNA_bind	PF10373.9	8.8e-42	1	1
ENSXMAP00000039776	EST1_DNA_bind	PF10373.9	9.1e-40	1	1
ENSXMAP00000039776	PIN_4	PF13638.6	3.3e-06	1	1
ENSXMAP00000013547	PIN_4	PF13638.6	5.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000038074	-	3048	-	ENSXMAP00000039776	1015 (aa)	-	-
ENSXMAT00000013563	-	4558	XM_005801822	ENSXMAP00000013547	1113 (aa)	XP_005801879	M4AGF3

Gene Model

Click here to download ENSXMAG00000013499's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000013499's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000013499	smg5	99	65.962	ENSG00000198952	SMG5	93	75.113	Homo_sapiens
ENSXMAG00000013499	smg5	100	88.287	ENSAPOG00000019690	smg5	100	87.311	Acanthochromis_polyacanthus
ENSXMAG00000013499	smg5	98	64.342	ENSAMEG00000014458	SMG5	91	76.617	Ailuropoda_melanoleuca
ENSXMAG00000013499	smg5	99	86.486	ENSACIG00000001353	smg5	99	86.969	Amphilophus_citrinellus
ENSXMAG00000013499	smg5	100	88.335	ENSAOCG00000019483	smg5	100	87.979	Amphiprion_ocellaris
ENSXMAG00000013499	smg5	100	88.246	ENSAPEG00000022949	smg5	100	87.979	Amphiprion_percula
ENSXMAG00000013499	smg5	100	85.943	ENSATEG00000005348	smg5	100	86.019	Anabas_testudineus
ENSXMAG00000013499	smg5	98	64.265	ENSAPLG00000010263	SMG5	100	63.619	Anas_platyrhynchos
ENSXMAG00000013499	smg5	99	65.673	ENSANAG00000032899	SMG5	99	65.830	Aotus_nancymaae
ENSXMAG00000013499	smg5	100	86.945	ENSACLG00000009311	smg5	100	87.022	Astatotilapia_calliptera
ENSXMAG00000013499	smg5	100	78.424	ENSAMXG00000024616	smg5	100	78.226	Astyanax_mexicanus
ENSXMAG00000013499	smg5	99	66.025	ENSBTAG00000009435	SMG5	99	65.988	Bos_taurus
ENSXMAG00000013499	smg5	90	50.852	ENSBTAG00000021747	-	99	38.959	Bos_taurus
ENSXMAG00000013499	smg5	99	65.673	ENSCJAG00000005684	SMG5	99	65.830	Callithrix_jacchus
ENSXMAG00000013499	smg5	99	65.366	ENSCAFG00000016839	SMG5	93	75.057	Canis_familiaris
ENSXMAG00000013499	smg5	99	65.366	ENSCAFG00020006061	SMG5	93	75.057	Canis_lupus_dingo
ENSXMAG00000013499	smg5	99	65.670	ENSCHIG00000007709	SMG5	99	65.988	Capra_hircus
ENSXMAG00000013499	smg5	99	39.922	ENSCHIG00000006323	-	99	39.008	Capra_hircus
ENSXMAG00000013499	smg5	99	65.700	ENSTSYG00000004099	SMG5	99	65.537	Carlito_syrichta
ENSXMAG00000013499	smg5	94	50.000	ENSCAPG00000003631	SMG5	100	49.642	Cavia_aperea
ENSXMAG00000013499	smg5	99	65.451	ENSCPOG00000015696	SMG5	99	66.182	Cavia_porcellus
ENSXMAG00000013499	smg5	99	65.477	ENSCCAG00000027409	SMG5	99	65.764	Cebus_capucinus
ENSXMAG00000013499	smg5	99	65.769	ENSCATG00000030539	SMG5	99	65.764	Cercocebus_atys
ENSXMAG00000013499	smg5	99	65.703	ENSCLAG00000003983	SMG5	99	66.085	Chinchilla_lanigera
ENSXMAG00000013499	smg5	99	65.769	ENSCSAG00000002120	SMG5	99	65.764	Chlorocebus_sabaeus
ENSXMAG00000013499	smg5	54	75.090	ENSCHOG00000008741	-	57	75.090	Choloepus_hoffmanni
ENSXMAG00000013499	smg5	93	64.706	ENSCPBG00000025848	SMG5	100	63.800	Chrysemys_picta_bellii
ENSXMAG00000013499	smg5	93	33.367	ENSCING00000008706	-	83	38.060	Ciona_intestinalis
ENSXMAG00000013499	smg5	99	63.052	ENSCANG00000029208	SMG5	99	62.705	Colobus_angolensis_palliatus
ENSXMAG00000013499	smg5	99	66.181	ENSCGRG00001006336	Smg5	99	65.823	Cricetulus_griseus_chok1gshd
ENSXMAG00000013499	smg5	98	66.073	ENSCGRG00000005111	Smg5	100	65.675	Cricetulus_griseus_crigri
ENSXMAG00000013499	smg5	100	83.122	ENSCSEG00000014220	smg5	100	83.105	Cynoglossus_semilaevis
ENSXMAG00000013499	smg5	100	82.515	ENSCVAG00000000529	smg5	100	82.728	Cyprinodon_variegatus
ENSXMAG00000013499	smg5	100	77.402	ENSDARG00000041481	smg5	100	76.909	Danio_rerio
ENSXMAG00000013499	smg5	88	78.571	ENSDNOG00000000051	SMG5	99	63.434	Dasypus_novemcinctus
ENSXMAG00000013499	smg5	92	33.828	ENSDNOG00000039862	-	87	39.267	Dasypus_novemcinctus
ENSXMAG00000013499	smg5	99	66.314	ENSDORG00000010382	Smg5	99	66.021	Dipodomys_ordii
ENSXMAG00000013499	smg5	76	84.466	ENSETEG00000010336	SMG5	83	84.466	Echinops_telfairi
ENSXMAG00000013499	smg5	91	44.620	ENSEBUG00000003739	smg5	89	53.465	Eptatretus_burgeri
ENSXMAG00000013499	smg5	99	65.698	ENSEASG00005019122	SMG5	99	65.280	Equus_asinus_asinus
ENSXMAG00000013499	smg5	99	65.601	ENSECAG00000001389	SMG5	99	65.184	Equus_caballus
ENSXMAG00000013499	smg5	73	77.591	ENSEEUG00000012690	SMG5	74	77.684	Erinaceus_europaeus
ENSXMAG00000013499	smg5	100	79.663	ENSELUG00000012585	smg5	100	78.034	Esox_lucius
ENSXMAG00000013499	smg5	99	65.631	ENSFCAG00000011783	SMG5	99	65.078	Felis_catus
ENSXMAG00000013499	smg5	56	69.270	ENSFALG00000001166	-	95	68.143	Ficedula_albicollis
ENSXMAG00000013499	smg5	98	65.354	ENSFDAG00000017388	SMG5	100	65.449	Fukomys_damarensis
ENSXMAG00000013499	smg5	98	82.482	ENSFHEG00000013939	smg5	94	93.968	Fundulus_heteroclitus
ENSXMAG00000013499	smg5	100	76.228	ENSGMOG00000007310	smg5	100	76.316	Gadus_morhua
ENSXMAG00000013499	smg5	99	65.943	ENSGALG00000029918	-	99	64.822	Gallus_gallus
ENSXMAG00000013499	smg5	93	97.778	ENSGAFG00000021691	smg5	99	97.778	Gambusia_affinis
ENSXMAG00000013499	smg5	100	84.014	ENSGACG00000013142	smg5	100	82.682	Gasterosteus_aculeatus
ENSXMAG00000013499	smg5	99	65.728	ENSGAGG00000016131	SMG5	99	64.467	Gopherus_agassizii
ENSXMAG00000013499	smg5	99	65.769	ENSGGOG00000010932	SMG5	93	75.113	Gorilla_gorilla
ENSXMAG00000013499	smg5	100	86.667	ENSHBUG00000008654	smg5	100	87.289	Haplochromis_burtoni
ENSXMAG00000013499	smg5	99	65.318	ENSHGLG00000019152	SMG5	93	74.266	Heterocephalus_glaber_female
ENSXMAG00000013499	smg5	90	66.096	ENSHGLG00100015948	SMG5	92	74.260	Heterocephalus_glaber_male
ENSXMAG00000013499	smg5	89	80.482	ENSHCOG00000010229	smg5	93	81.687	Hippocampus_comes
ENSXMAG00000013499	smg5	100	77.313	ENSIPUG00000006624	Smg5	100	77.046	Ictalurus_punctatus
ENSXMAG00000013499	smg5	99	65.739	ENSSTOG00000001780	SMG5	93	74.718	Ictidomys_tridecemlineatus
ENSXMAG00000013499	smg5	99	65.700	ENSJJAG00000022763	Smg5	99	65.444	Jaculus_jaculus
ENSXMAG00000013499	smg5	100	89.146	ENSKMAG00000014586	smg5	100	89.413	Kryptolebias_marmoratus
ENSXMAG00000013499	smg5	100	86.898	ENSLBEG00000002145	smg5	100	86.453	Labrus_bergylta
ENSXMAG00000013499	smg5	99	57.989	ENSLACG00000010521	SMG5	99	58.451	Latimeria_chalumnae
ENSXMAG00000013499	smg5	96	82.243	ENSLOCG00000008380	smg5	99	71.504	Lepisosteus_oculatus
ENSXMAG00000013499	smg5	100	65.125	ENSLAFG00000006241	SMG5	100	65.381	Loxodonta_africana
ENSXMAG00000013499	smg5	99	65.769	ENSMFAG00000045357	SMG5	99	65.764	Macaca_fascicularis
ENSXMAG00000013499	smg5	92	78.118	ENSMMUG00000000090	SMG5	94	75.283	Macaca_mulatta
ENSXMAG00000013499	smg5	99	65.673	ENSMNEG00000044425	SMG5	99	65.667	Macaca_nemestrina
ENSXMAG00000013499	smg5	99	60.345	ENSMLEG00000041192	SMG5	99	60.038	Mandrillus_leucophaeus
ENSXMAG00000013499	smg5	100	86.020	ENSMAMG00000010683	smg5	100	86.109	Mastacembelus_armatus
ENSXMAG00000013499	smg5	99	80.829	ENSMZEG00005015815	smg5	99	80.692	Maylandia_zebra
ENSXMAG00000013499	smg5	62	79.077	ENSMZEG00005016543	smg5	100	78.473	Maylandia_zebra
ENSXMAG00000013499	smg5	99	66.084	ENSMAUG00000010381	Smg5	99	65.728	Mesocricetus_auratus
ENSXMAG00000013499	smg5	55	39.899	ENSMAUG00000000043	-	68	50.769	Mesocricetus_auratus
ENSXMAG00000013499	smg5	99	65.634	ENSMICG00000002257	SMG5	99	65.825	Microcebus_murinus
ENSXMAG00000013499	smg5	99	65.243	ENSMOCG00000016590	Smg5	99	65.370	Microtus_ochrogaster
ENSXMAG00000013499	smg5	100	82.206	ENSMMOG00000017199	smg5	100	81.988	Mola_mola
ENSXMAG00000013499	smg5	97	31.021	ENSMODG00000004511	-	79	35.904	Monodelphis_domestica
ENSXMAG00000013499	smg5	74	35.753	ENSMODG00000004735	-	89	35.753	Monodelphis_domestica
ENSXMAG00000013499	smg5	78	34.804	ENSMODG00000004532	-	89	34.101	Monodelphis_domestica
ENSXMAG00000013499	smg5	87	65.632	ENSMODG00000016901	SMG5	98	64.751	Monodelphis_domestica
ENSXMAG00000013499	smg5	76	33.933	ENSMODG00000010675	-	90	34.015	Monodelphis_domestica
ENSXMAG00000013499	smg5	100	85.294	ENSMALG00000010375	smg5	100	85.116	Monopterus_albus
ENSXMAG00000013499	smg5	99	66.181	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSXMAG00000013499	smg5	99	66.375	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSXMAG00000013499	smg5	99	66.052	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSXMAG00000013499	smg5	99	66.181	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSXMAG00000013499	smg5	93	64.264	ENSMPUG00000004546	SMG5	93	72.944	Mustela_putorius_furo
ENSXMAG00000013499	smg5	99	66.409	ENSMLUG00000008518	SMG5	93	75.339	Myotis_lucifugus
ENSXMAG00000013499	smg5	99	66.084	ENSNGAG00000020706	Smg5	93	75.114	Nannospalax_galili
ENSXMAG00000013499	smg5	99	39.310	ENSNGAG00000012101	-	99	39.135	Nannospalax_galili
ENSXMAG00000013499	smg5	97	81.496	ENSNBRG00000004332	smg5	98	81.754	Neolamprologus_brichardi
ENSXMAG00000013499	smg5	99	65.865	ENSNLEG00000012439	SMG5	93	75.339	Nomascus_leucogenys
ENSXMAG00000013499	smg5	99	64.403	ENSMEUG00000012834	SMG5	99	64.369	Notamacropus_eugenii
ENSXMAG00000013499	smg5	99	66.249	ENSOPRG00000009152	SMG5	99	65.571	Ochotona_princeps
ENSXMAG00000013499	smg5	99	65.418	ENSODEG00000012237	SMG5	93	75.395	Octodon_degus
ENSXMAG00000013499	smg5	100	86.489	ENSONIG00000008632	smg5	100	86.489	Oreochromis_niloticus
ENSXMAG00000013499	smg5	98	66.338	ENSOCUG00000012886	SMG5	100	65.943	Oryctolagus_cuniculus
ENSXMAG00000013499	smg5	89	37.419	ENSOCUG00000023338	-	99	37.242	Oryctolagus_cuniculus
ENSXMAG00000013499	smg5	100	84.286	ENSORLG00000016239	smg5	100	84.643	Oryzias_latipes
ENSXMAG00000013499	smg5	100	84.657	ENSORLG00020013127	smg5	100	84.821	Oryzias_latipes_hni
ENSXMAG00000013499	smg5	100	84.464	ENSORLG00015019014	smg5	100	84.911	Oryzias_latipes_hsok
ENSXMAG00000013499	smg5	84	84.166	ENSOMEG00000021330	smg5	92	83.953	Oryzias_melastigma
ENSXMAG00000013499	smg5	99	65.121	ENSOGAG00000004966	SMG5	99	65.470	Otolemur_garnettii
ENSXMAG00000013499	smg5	99	65.574	ENSOARG00000005778	SMG5	99	65.988	Ovis_aries
ENSXMAG00000013499	smg5	99	40.252	ENSOARG00000011963	-	99	39.347	Ovis_aries
ENSXMAG00000013499	smg5	99	65.865	ENSPPAG00000011996	SMG5	93	74.887	Pan_paniscus
ENSXMAG00000013499	smg5	98	65.579	ENSPPRG00000011901	SMG5	93	75.418	Panthera_pardus
ENSXMAG00000013499	smg5	97	62.550	ENSPTIG00000007892	SMG5	92	72.488	Panthera_tigris_altaica
ENSXMAG00000013499	smg5	99	65.865	ENSPTRG00000023925	SMG5	93	74.887	Pan_troglodytes
ENSXMAG00000013499	smg5	99	65.865	ENSPTRG00000049282	-	93	74.887	Pan_troglodytes
ENSXMAG00000013499	smg5	99	65.769	ENSPANG00000011201	SMG5	99	65.764	Papio_anubis
ENSXMAG00000013499	smg5	100	76.058	ENSPKIG00000009402	smg5	100	75.553	Paramormyrops_kingsleyae
ENSXMAG00000013499	smg5	98	66.960	ENSPSIG00000015198	SMG5	100	65.849	Pelodiscus_sinensis
ENSXMAG00000013499	smg5	100	71.644	ENSPMGG00000010465	smg5	100	70.740	Periophthalmus_magnuspinnatus
ENSXMAG00000013499	smg5	99	66.084	ENSPEMG00000001819	Smg5	99	65.628	Peromyscus_maniculatus_bairdii
ENSXMAG00000013499	smg5	57	41.216	ENSPEMG00000010022	-	68	50.248	Peromyscus_maniculatus_bairdii
ENSXMAG00000013499	smg5	86	62.899	ENSPMAG00000000410	smg5	91	63.070	Petromyzon_marinus
ENSXMAG00000013499	smg5	99	65.336	ENSPCIG00000018938	SMG5	99	64.500	Phascolarctos_cinereus
ENSXMAG00000013499	smg5	100	97.305	ENSPFOG00000010191	smg5	100	97.305	Poecilia_formosa
ENSXMAG00000013499	smg5	100	97.484	ENSPLAG00000009332	smg5	100	97.484	Poecilia_latipinna
ENSXMAG00000013499	smg5	100	97.394	ENSPMEG00000014105	smg5	100	97.394	Poecilia_mexicana
ENSXMAG00000013499	smg5	100	97.934	ENSPREG00000017713	smg5	100	97.934	Poecilia_reticulata
ENSXMAG00000013499	smg5	99	65.962	ENSPPYG00000000723	SMG5	93	75.113	Pongo_abelii
ENSXMAG00000013499	smg5	82	74.359	ENSPCAG00000008412	SMG5	81	78.333	Procavia_capensis
ENSXMAG00000013499	smg5	99	65.474	ENSPCOG00000004741	SMG5	99	65.955	Propithecus_coquereli
ENSXMAG00000013499	smg5	99	59.342	ENSPVAG00000016748	SMG5	99	58.567	Pteropus_vampyrus
ENSXMAG00000013499	smg5	100	86.271	ENSPNYG00000013397	smg5	100	86.802	Pundamilia_nyererei
ENSXMAG00000013499	smg5	100	78.820	ENSPNAG00000028363	smg5	100	78.265	Pygocentrus_nattereri
ENSXMAG00000013499	smg5	99	66.117	ENSRNOG00000019590	Smg5	99	65.761	Rattus_norvegicus
ENSXMAG00000013499	smg5	99	65.769	ENSRBIG00000027428	SMG5	99	65.507	Rhinopithecus_bieti
ENSXMAG00000013499	smg5	99	65.673	ENSRROG00000030035	SMG5	99	65.474	Rhinopithecus_roxellana
ENSXMAG00000013499	smg5	99	65.769	ENSSBOG00000033339	SMG5	99	65.927	Saimiri_boliviensis_boliviensis
ENSXMAG00000013499	smg5	76	36.132	ENSSHAG00000000561	-	88	36.317	Sarcophilus_harrisii
ENSXMAG00000013499	smg5	57	35.697	ENSSHAG00000000935	-	82	35.697	Sarcophilus_harrisii
ENSXMAG00000013499	smg5	99	31.311	ENSSHAG00000009572	-	83	39.492	Sarcophilus_harrisii
ENSXMAG00000013499	smg5	98	64.665	ENSSHAG00000014163	SMG5	100	64.047	Sarcophilus_harrisii
ENSXMAG00000013499	smg5	100	76.288	ENSSFOG00015024175	smg5	100	77.176	Scleropages_formosus
ENSXMAG00000013499	smg5	100	86.441	ENSSMAG00000013059	smg5	100	86.173	Scophthalmus_maximus
ENSXMAG00000013499	smg5	100	87.257	ENSSDUG00000007122	smg5	100	86.106	Seriola_dumerili
ENSXMAG00000013499	smg5	100	87.655	ENSSLDG00000011418	smg5	100	87.034	Seriola_lalandi_dorsalis
ENSXMAG00000013499	smg5	86	68.705	ENSSARG00000012484	SMG5	99	58.988	Sorex_araneus
ENSXMAG00000013499	smg5	93	63.383	ENSSPUG00000002260	SMG5	100	62.675	Sphenodon_punctatus
ENSXMAG00000013499	smg5	100	88.475	ENSSPAG00000014266	smg5	100	88.032	Stegastes_partitus
ENSXMAG00000013499	smg5	95	56.000	ENSSSCG00000039308	-	99	51.412	Sus_scrofa
ENSXMAG00000013499	smg5	99	65.863	ENSSSCG00000006490	-	100	65.841	Sus_scrofa
ENSXMAG00000013499	smg5	99	65.959	ENSTGUG00000003748	-	99	65.537	Taeniopygia_guttata
ENSXMAG00000013499	smg5	100	79.185	ENSTRUG00000012580	smg5	100	79.237	Takifugu_rubripes
ENSXMAG00000013499	smg5	100	79.962	ENSTNIG00000010303	smg5	100	79.028	Tetraodon_nigroviridis
ENSXMAG00000013499	smg5	57	83.251	ENSTBEG00000002777	SMG5	58	83.251	Tupaia_belangeri
ENSXMAG00000013499	smg5	99	62.488	ENSTTRG00000001401	SMG5	93	69.683	Tursiops_truncatus
ENSXMAG00000013499	smg5	99	65.306	ENSUAMG00000013721	SMG5	93	74.771	Ursus_americanus
ENSXMAG00000013499	smg5	92	73.786	ENSUMAG00000018041	SMG5	95	72.517	Ursus_maritimus
ENSXMAG00000013499	smg5	92	70.297	ENSVPAG00000009446	SMG5	93	65.714	Vicugna_pacos
ENSXMAG00000013499	smg5	99	64.689	ENSVVUG00000005887	SMG5	91	76.777	Vulpes_vulpes
ENSXMAG00000013499	smg5	77	55.718	ENSXETG00000033791	SMG5	99	54.926	Xenopus_tropicalis
ENSXMAG00000013499	smg5	91	98.919	ENSXCOG00000004379	smg5	99	100.000	Xiphophorus_couchianus