EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000013523 (Gene tree)
Gene ID: 102224614
Gene Symbol: vars2
Alias: si:ch211-152p11.2
Full Name: valyl-tRNA synthetase 2%2C mitochondrial
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 33729 bases
Position: chr13:25147508-25181236
Accession: 102224614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000013556	tRNA-synt_1g	PF09334.11	1.2e-14	1	1
ENSXMAP00000036971	tRNA-synt_1g	PF09334.11	1.2e-14	1	1
ENSXMAP00000037381	tRNA-synt_1g	PF09334.11	1.2e-14	1	1
ENSXMAP00000013556	Anticodon_1	PF08264.13	2.3e-34	1	1
ENSXMAP00000036971	Anticodon_1	PF08264.13	2.3e-34	1	1
ENSXMAP00000037381	Anticodon_1	PF08264.13	2.3e-34	1	1
ENSXMAP00000013556	tRNA-synt_1	PF00133.22	2.8e-197	1	1
ENSXMAP00000036971	tRNA-synt_1	PF00133.22	2.8e-197	1	1
ENSXMAP00000037381	tRNA-synt_1	PF00133.22	2.8e-197	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000013572	-	3812	XM_023345040	ENSXMAP00000013556	1080 (aa)	XP_023200808	M4AGG2
ENSXMAT00000042376	-	3757	XM_023345038	ENSXMAP00000036971	1080 (aa)	XP_023200806	UPI000C6EC4B9
ENSXMAT00000039421	-	4032	XM_023345039	ENSXMAP00000037381	1080 (aa)	XP_023200807	UPI000C6EC4B9

Gene Model

Click here to download ENSXMAG00000013523's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000013523's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000013523	vars2	96	79.865	ENSAPOG00000007396	vars2	99	78.426	Acanthochromis_polyacanthus
ENSXMAG00000013523	vars2	96	50.672	ENSAMEG00000012997	VARS2	89	51.826	Ailuropoda_melanoleuca
ENSXMAG00000013523	vars2	99	77.108	ENSACIG00000004344	vars2	99	77.108	Amphilophus_citrinellus
ENSXMAG00000013523	vars2	96	80.154	ENSAOCG00000000476	vars2	99	78.704	Amphiprion_ocellaris
ENSXMAG00000013523	vars2	96	80.250	ENSAPEG00000008646	vars2	97	78.796	Amphiprion_percula
ENSXMAG00000013523	vars2	96	80.134	ENSATEG00000012291	vars2	99	78.333	Anabas_testudineus
ENSXMAG00000013523	vars2	96	51.567	ENSACAG00000022093	VARS2	91	52.964	Anolis_carolinensis
ENSXMAG00000013523	vars2	98	49.120	ENSANAG00000038018	VARS2	93	50.440	Aotus_nancymaae
ENSXMAG00000013523	vars2	99	75.510	ENSACLG00000018673	vars2	99	75.510	Astatotilapia_calliptera
ENSXMAG00000013523	vars2	96	68.876	ENSAMXG00000017773	vars2	92	71.609	Astyanax_mexicanus
ENSXMAG00000013523	vars2	98	50.139	ENSBTAG00000010698	VARS2	92	52.329	Bos_taurus
ENSXMAG00000013523	vars2	96	49.952	ENSCJAG00000019826	VARS2	92	51.239	Callithrix_jacchus
ENSXMAG00000013523	vars2	97	50.804	ENSCAFG00000000454	VARS2	92	52.122	Canis_familiaris
ENSXMAG00000013523	vars2	84	55.714	ENSCAFG00020019387	VARS2	89	56.372	Canis_lupus_dingo
ENSXMAG00000013523	vars2	98	50.139	ENSCHIG00000007847	VARS2	92	52.320	Capra_hircus
ENSXMAG00000013523	vars2	97	50.951	ENSTSYG00000009904	VARS2	92	52.079	Carlito_syrichta
ENSXMAG00000013523	vars2	88	52.565	ENSCAPG00000017770	VARS2	99	52.565	Cavia_aperea
ENSXMAG00000013523	vars2	97	50.700	ENSCPOG00000021834	VARS2	93	52.051	Cavia_porcellus
ENSXMAG00000013523	vars2	96	50.144	ENSCCAG00000037907	VARS2	92	51.437	Cebus_capucinus
ENSXMAG00000013523	vars2	96	50.430	ENSCATG00000032554	VARS2	93	51.022	Cercocebus_atys
ENSXMAG00000013523	vars2	97	50.421	ENSCLAG00000002889	VARS2	92	52.428	Chinchilla_lanigera
ENSXMAG00000013523	vars2	95	51.011	ENSCSAG00000008327	VARS2	91	52.338	Chlorocebus_sabaeus
ENSXMAG00000013523	vars2	91	55.051	ENSCPBG00000021502	VARS2	87	64.832	Chrysemys_picta_bellii
ENSXMAG00000013523	vars2	96	50.334	ENSCANG00000014991	VARS2	92	50.925	Colobus_angolensis_palliatus
ENSXMAG00000013523	vars2	96	51.297	ENSCGRG00001021535	Vars2	92	52.230	Cricetulus_griseus_chok1gshd
ENSXMAG00000013523	vars2	96	51.297	ENSCGRG00000014112	Vars2	92	52.230	Cricetulus_griseus_crigri
ENSXMAG00000013523	vars2	87	83.544	ENSCSEG00000015432	vars2	96	83.544	Cynoglossus_semilaevis
ENSXMAG00000013523	vars2	66	85.493	ENSCVAG00000017765	vars2	98	85.493	Cyprinodon_variegatus
ENSXMAG00000013523	vars2	99	66.574	ENSDARG00000056717	vars2	100	66.574	Danio_rerio
ENSXMAG00000013523	vars2	80	49.199	ENSDORG00000008516	Vars2	93	49.199	Dipodomys_ordii
ENSXMAG00000013523	vars2	96	45.341	ENSETEG00000014844	VARS2	93	45.748	Echinops_telfairi
ENSXMAG00000013523	vars2	98	49.120	ENSEASG00005019997	VARS2	94	54.631	Equus_asinus_asinus
ENSXMAG00000013523	vars2	98	49.305	ENSECAG00000018202	VARS2	92	51.536	Equus_caballus
ENSXMAG00000013523	vars2	64	59.804	ENSEEUG00000012591	-	62	59.804	Erinaceus_europaeus
ENSXMAG00000013523	vars2	99	66.851	ENSELUG00000017824	vars2	99	66.851	Esox_lucius
ENSXMAG00000013523	vars2	97	50.615	ENSFCAG00000010531	VARS2	92	51.717	Felis_catus
ENSXMAG00000013523	vars2	99	49.173	ENSFDAG00000017216	VARS2	93	50.925	Fukomys_damarensis
ENSXMAG00000013523	vars2	94	81.854	ENSFHEG00000013932	vars2	100	81.854	Fundulus_heteroclitus
ENSXMAG00000013523	vars2	89	68.976	ENSGMOG00000018960	vars2	99	68.976	Gadus_morhua
ENSXMAG00000013523	vars2	93	95.515	ENSGAFG00000004737	vars2	100	95.515	Gambusia_affinis
ENSXMAG00000013523	vars2	94	77.624	ENSGACG00000001464	vars2	99	77.624	Gasterosteus_aculeatus
ENSXMAG00000013523	vars2	91	54.427	ENSGAGG00000011652	VARS2	98	54.427	Gopherus_agassizii
ENSXMAG00000013523	vars2	96	50.815	ENSGGOG00000014587	VARS2	93	51.417	Gorilla_gorilla
ENSXMAG00000013523	vars2	99	72.862	ENSHBUG00000002448	vars2	100	72.862	Haplochromis_burtoni
ENSXMAG00000013523	vars2	98	49.534	ENSHGLG00000012886	VARS2	90	50.831	Heterocephalus_glaber_female
ENSXMAG00000013523	vars2	98	49.440	ENSHGLG00100016535	VARS2	93	50.733	Heterocephalus_glaber_male
ENSXMAG00000013523	vars2	68	75.646	ENSHCOG00000017907	vars2	97	75.646	Hippocampus_comes
ENSXMAG00000013523	vars2	94	68.566	ENSIPUG00000015573	Vars2	97	67.519	Ictalurus_punctatus
ENSXMAG00000013523	vars2	98	49.907	ENSSTOG00000009924	VARS2	93	51.417	Ictidomys_tridecemlineatus
ENSXMAG00000013523	vars2	96	50.383	ENSJJAG00000011144	Vars2	93	51.584	Jaculus_jaculus
ENSXMAG00000013523	vars2	100	78.217	ENSKMAG00000001393	vars2	100	78.309	Kryptolebias_marmoratus
ENSXMAG00000013523	vars2	52	80.322	ENSLBEG00000005480	-	81	80.435	Labrus_bergylta
ENSXMAG00000013523	vars2	99	70.941	ENSLBEG00000011949	vars2	99	70.941	Labrus_bergylta
ENSXMAG00000013523	vars2	96	49.053	ENSLACG00000001576	-	96	50.146	Latimeria_chalumnae
ENSXMAG00000013523	vars2	98	50.046	ENSLAFG00000015183	VARS2	93	51.312	Loxodonta_africana
ENSXMAG00000013523	vars2	97	50.190	ENSMFAG00000042367	VARS2	93	50.732	Macaca_fascicularis
ENSXMAG00000013523	vars2	97	50.285	ENSMMUG00000018609	VARS2	93	50.829	Macaca_mulatta
ENSXMAG00000013523	vars2	97	50.190	ENSMNEG00000043163	VARS2	93	50.732	Macaca_nemestrina
ENSXMAG00000013523	vars2	96	50.672	ENSMLEG00000041728	VARS2	90	51.120	Mandrillus_leucophaeus
ENSXMAG00000013523	vars2	96	77.457	ENSMAMG00000020339	vars2	98	76.682	Mastacembelus_armatus
ENSXMAG00000013523	vars2	99	75.417	ENSMZEG00005017669	vars2	99	75.417	Maylandia_zebra
ENSXMAG00000013523	vars2	98	50.513	ENSMAUG00000018946	Vars2	92	52.024	Mesocricetus_auratus
ENSXMAG00000013523	vars2	82	54.374	ENSMICG00000005365	VARS2	92	57.143	Microcebus_murinus
ENSXMAG00000013523	vars2	98	45.837	ENSMOCG00000014607	Vars2	84	56.340	Microtus_ochrogaster
ENSXMAG00000013523	vars2	94	76.256	ENSMMOG00000012122	vars2	99	74.603	Mola_mola
ENSXMAG00000013523	vars2	95	50.143	ENSMODG00000015848	VARS2	91	50.787	Monodelphis_domestica
ENSXMAG00000013523	vars2	96	75.673	ENSMALG00000009217	vars2	99	76.999	Monopterus_albus
ENSXMAG00000013523	vars2	97	51.567	MGP_CAROLIEiJ_G0021529	Vars2	97	54.577	Mus_caroli
ENSXMAG00000013523	vars2	97	51.092	ENSMUSG00000038838	Vars2	93	55.835	Mus_musculus
ENSXMAG00000013523	vars2	97	50.951	MGP_PahariEiJ_G0020523	Vars2	93	55.655	Mus_pahari
ENSXMAG00000013523	vars2	97	51.187	MGP_SPRETEiJ_G0022436	Vars2	97	54.404	Mus_spretus
ENSXMAG00000013523	vars2	97	50.712	ENSMPUG00000011643	VARS2	93	51.761	Mustela_putorius_furo
ENSXMAG00000013523	vars2	93	51.632	ENSMLUG00000002356	VARS2	87	52.240	Myotis_lucifugus
ENSXMAG00000013523	vars2	97	46.902	ENSNGAG00000020607	Vars2	93	47.656	Nannospalax_galili
ENSXMAG00000013523	vars2	63	66.355	ENSNBRG00000001624	vars2	58	66.355	Neolamprologus_brichardi
ENSXMAG00000013523	vars2	94	50.584	ENSNLEG00000005625	VARS2	91	51.190	Nomascus_leucogenys
ENSXMAG00000013523	vars2	76	56.667	ENSMEUG00000014475	VARS2	87	56.667	Notamacropus_eugenii
ENSXMAG00000013523	vars2	86	55.914	ENSOPRG00000000682	VARS2	83	59.146	Ochotona_princeps
ENSXMAG00000013523	vars2	96	50.142	ENSODEG00000017965	VARS2	92	51.635	Octodon_degus
ENSXMAG00000013523	vars2	94	58.008	ENSONIG00000004734	vars2	100	58.008	Oreochromis_niloticus
ENSXMAG00000013523	vars2	75	58.824	ENSOANG00000000398	-	91	42.416	Ornithorhynchus_anatinus
ENSXMAG00000013523	vars2	98	46.514	ENSOCUG00000021496	VARS2	59	48.773	Oryctolagus_cuniculus
ENSXMAG00000013523	vars2	95	74.391	ENSORLG00000010632	vars2	99	72.217	Oryzias_latipes
ENSXMAG00000013523	vars2	95	74.391	ENSORLG00020018584	vars2	99	72.284	Oryzias_latipes_hni
ENSXMAG00000013523	vars2	95	74.172	ENSORLG00015010408	vars2	99	71.915	Oryzias_latipes_hsok
ENSXMAG00000013523	vars2	95	73.883	ENSOMEG00000008360	vars2	99	71.797	Oryzias_melastigma
ENSXMAG00000013523	vars2	96	50.621	ENSOGAG00000006087	VARS2	89	51.632	Otolemur_garnettii
ENSXMAG00000013523	vars2	98	49.631	ENSOARG00000010844	VARS2	90	51.775	Ovis_aries
ENSXMAG00000013523	vars2	96	50.963	ENSPPAG00000041141	VARS2	93	51.320	Pan_paniscus
ENSXMAG00000013523	vars2	97	50.710	ENSPPRG00000006751	VARS2	90	51.816	Panthera_pardus
ENSXMAG00000013523	vars2	97	50.615	ENSPTIG00000017799	VARS2	97	51.619	Panthera_tigris_altaica
ENSXMAG00000013523	vars2	96	50.963	ENSPTRG00000034497	VARS2	93	51.320	Pan_troglodytes
ENSXMAG00000013523	vars2	96	50.430	ENSPANG00000018481	VARS2	92	53.067	Papio_anubis
ENSXMAG00000013523	vars2	96	66.538	ENSPKIG00000011372	vars2	97	65.755	Paramormyrops_kingsleyae
ENSXMAG00000013523	vars2	58	61.792	ENSPSIG00000006206	VARS2	92	61.550	Pelodiscus_sinensis
ENSXMAG00000013523	vars2	97	71.211	ENSPMGG00000000465	vars2	97	71.211	Periophthalmus_magnuspinnatus
ENSXMAG00000013523	vars2	96	50.962	ENSPEMG00000014691	Vars2	92	51.976	Peromyscus_maniculatus_bairdii
ENSXMAG00000013523	vars2	98	49.813	ENSPCIG00000015040	VARS2	92	51.485	Phascolarctos_cinereus
ENSXMAG00000013523	vars2	98	90.832	ENSPFOG00000017616	vars2	97	90.832	Poecilia_formosa
ENSXMAG00000013523	vars2	100	91.111	ENSPLAG00000019778	vars2	100	91.111	Poecilia_latipinna
ENSXMAG00000013523	vars2	100	91.481	ENSPMEG00000011123	vars2	100	91.481	Poecilia_mexicana
ENSXMAG00000013523	vars2	97	82.890	ENSPREG00000014998	vars2	99	82.890	Poecilia_reticulata
ENSXMAG00000013523	vars2	96	50.719	ENSPPYG00000016424	VARS2	93	51.320	Pongo_abelii
ENSXMAG00000013523	vars2	64	53.500	ENSPCAG00000006946	VARS2	61	53.500	Procavia_capensis
ENSXMAG00000013523	vars2	98	48.619	ENSPCOG00000014839	VARS2	91	50.000	Propithecus_coquereli
ENSXMAG00000013523	vars2	96	50.143	ENSPVAG00000004197	VARS2	93	50.633	Pteropus_vampyrus
ENSXMAG00000013523	vars2	87	80.323	ENSPNYG00000010314	vars2	100	80.323	Pundamilia_nyererei
ENSXMAG00000013523	vars2	96	68.265	ENSPNAG00000026793	vars2	97	67.705	Pygocentrus_nattereri
ENSXMAG00000013523	vars2	97	50.997	ENSRNOG00000000833	Vars2	92	51.976	Rattus_norvegicus
ENSXMAG00000013523	vars2	96	50.430	ENSRBIG00000032725	VARS2	92	51.779	Rhinopithecus_bieti
ENSXMAG00000013523	vars2	96	50.334	ENSRROG00000043847	VARS2	93	50.925	Rhinopithecus_roxellana
ENSXMAG00000013523	vars2	96	49.434	ENSSBOG00000033240	VARS2	90	50.436	Saimiri_boliviensis_boliviensis
ENSXMAG00000013523	vars2	98	50.416	ENSSHAG00000009307	VARS2	92	52.174	Sarcophilus_harrisii
ENSXMAG00000013523	vars2	97	67.304	ENSSFOG00015016187	vars2	96	67.368	Scleropages_formosus
ENSXMAG00000013523	vars2	99	76.574	ENSSMAG00000020842	vars2	99	76.574	Scophthalmus_maximus
ENSXMAG00000013523	vars2	99	78.889	ENSSDUG00000011598	vars2	99	79.186	Seriola_dumerili
ENSXMAG00000013523	vars2	99	76.454	ENSSLDG00000015492	vars2	99	76.639	Seriola_lalandi_dorsalis
ENSXMAG00000013523	vars2	79	59.320	ENSSPUG00000014700	VARS2	87	59.320	Sphenodon_punctatus
ENSXMAG00000013523	vars2	99	75.648	ENSSPAG00000004654	vars2	99	75.648	Stegastes_partitus
ENSXMAG00000013523	vars2	97	51.420	ENSSSCG00000001384	VARS2	94	54.375	Sus_scrofa
ENSXMAG00000013523	vars2	96	73.095	ENSTRUG00000005264	vars2	99	71.860	Takifugu_rubripes
ENSXMAG00000013523	vars2	97	68.756	ENSTNIG00000005916	vars2	98	68.421	Tetraodon_nigroviridis
ENSXMAG00000013523	vars2	82	53.927	ENSTTRG00000012243	VARS2	81	59.006	Tursiops_truncatus
ENSXMAG00000013523	vars2	97	50.378	ENSUAMG00000026124	VARS2	99	52.215	Ursus_americanus
ENSXMAG00000013523	vars2	97	50.520	ENSUMAG00000019894	VARS2	93	51.217	Ursus_maritimus
ENSXMAG00000013523	vars2	97	50.804	ENSVVUG00000010754	VARS2	87	52.122	Vulpes_vulpes
ENSXMAG00000013523	vars2	90	51.515	ENSXETG00000003036	vars2	100	51.515	Xenopus_tropicalis
ENSXMAG00000013523	vars2	97	97.617	ENSXCOG00000003455	vars2	99	97.617	Xiphophorus_couchianus