EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000013524 (Gene tree)
Gene ID: 102227161
Gene Symbol: cstf2
Alias: CstF-64|fb11e07|wu:fb11e07|zgc:77730
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 13302 bases
Position: chr23:8482745-8496046
Accession: 102227161
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000013551	RRM_1	PF00076.22	1.6e-24	1	1
ENSXMAP00000039548	RRM_1	PF00076.22	1.7e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000013567	-	1590	XM_023328378	ENSXMAP00000013551	529 (aa)	XP_023184146	M4AGF7
ENSXMAT00000024637	-	1650	XM_014468937	ENSXMAP00000039548	549 (aa)	XP_014324423	UPI000C6E5BF7

Gene Model

Click here to download ENSXMAG00000013524's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000013524's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000013524	cstf2	97	56.070	ENSG00000101811	CSTF2	81	91.257	Homo_sapiens
ENSXMAG00000013524	cstf2	97	82.296	ENSAPOG00000005630	cstf2	65	90.991	Acanthochromis_polyacanthus
ENSXMAG00000013524	cstf2	96	76.402	ENSACIG00000012852	cstf2	66	87.421	Amphilophus_citrinellus
ENSXMAG00000013524	cstf2	100	82.075	ENSAOCG00000020905	cstf2	65	90.634	Amphiprion_ocellaris
ENSXMAG00000013524	cstf2	100	82.075	ENSAPEG00000006526	cstf2	65	90.634	Amphiprion_percula
ENSXMAG00000013524	cstf2	100	79.291	ENSATEG00000018186	cstf2	63	91.562	Anabas_testudineus
ENSXMAG00000013524	cstf2	94	59.391	ENSAPLG00000007255	CSTF2	75	80.498	Anas_platyrhynchos
ENSXMAG00000013524	cstf2	97	74.205	ENSANAG00000022342	CSTF2	95	61.990	Aotus_nancymaae
ENSXMAG00000013524	cstf2	100	80.863	ENSACLG00000000779	cstf2	61	89.423	Astatotilapia_calliptera
ENSXMAG00000013524	cstf2	74	86.973	ENSAMXG00000021477	cstf2	72	86.207	Astyanax_mexicanus
ENSXMAG00000013524	cstf2	86	71.987	ENSCJAG00000004422	CSTF2	78	80.488	Callithrix_jacchus
ENSXMAG00000013524	cstf2	96	78.229	ENSCAFG00020007619	CSTF2	95	62.755	Canis_lupus_dingo
ENSXMAG00000013524	cstf2	97	54.167	ENSCPOG00000015255	CSTF2	84	92.157	Cavia_porcellus
ENSXMAG00000013524	cstf2	97	57.426	ENSCCAG00000032975	CSTF2	58	71.171	Cebus_capucinus
ENSXMAG00000013524	cstf2	97	57.807	ENSCATG00000022835	CSTF2	58	70.497	Cercocebus_atys
ENSXMAG00000013524	cstf2	96	59.828	ENSCLAG00000001904	CSTF2	85	90.385	Chinchilla_lanigera
ENSXMAG00000013524	cstf2	97	58.824	ENSCPBG00000014293	CSTF2	65	82.661	Chrysemys_picta_bellii
ENSXMAG00000013524	cstf2	97	57.426	ENSCANG00000030612	CSTF2	58	70.497	Colobus_angolensis_palliatus
ENSXMAG00000013524	cstf2	97	58.696	ENSCGRG00001023023	Cstf2	65	80.645	Cricetulus_griseus_chok1gshd
ENSXMAG00000013524	cstf2	97	59.091	ENSCGRG00000003897	Cstf2	60	70.270	Cricetulus_griseus_crigri
ENSXMAG00000013524	cstf2	97	84.270	ENSCVAG00000005731	cstf2	66	92.216	Cyprinodon_variegatus
ENSXMAG00000013524	cstf2	79	100.000	ENSDARG00000090788	cstf2	55	100.000	Danio_rerio
ENSXMAG00000013524	cstf2	97	56.866	ENSDORG00000007195	Cstf2	83	92.053	Dipodomys_ordii
ENSXMAG00000013524	cstf2	68	86.207	ENSETEG00000004931	CSTF2	64	86.207	Echinops_telfairi
ENSXMAG00000013524	cstf2	89	57.469	ENSFALG00000003859	CSTF2	75	78.873	Ficedula_albicollis
ENSXMAG00000013524	cstf2	97	74.737	ENSFDAG00000002416	CSTF2	95	61.735	Fukomys_damarensis
ENSXMAG00000013524	cstf2	97	82.936	ENSFHEG00000017065	cstf2	65	89.308	Fundulus_heteroclitus
ENSXMAG00000013524	cstf2	96	68.665	ENSGMOG00000005145	cstf2	65	76.623	Gadus_morhua
ENSXMAG00000013524	cstf2	97	60.204	ENSGALG00000006760	CSTF2	85	83.333	Gallus_gallus
ENSXMAG00000013524	cstf2	96	89.041	ENSGAFG00000020027	cstf2	63	98.071	Gambusia_affinis
ENSXMAG00000013524	cstf2	97	71.892	ENSGACG00000017326	cstf2	85	86.939	Gasterosteus_aculeatus
ENSXMAG00000013524	cstf2	97	59.655	ENSGAGG00000006037	CSTF2	68	81.349	Gopherus_agassizii
ENSXMAG00000013524	cstf2	97	57.591	ENSGGOG00000022267	CSTF2	58	71.171	Gorilla_gorilla
ENSXMAG00000013524	cstf2	100	80.935	ENSHBUG00000016183	cstf2	62	90.159	Haplochromis_burtoni
ENSXMAG00000013524	cstf2	78	61.555	ENSHGLG00000000659	-	86	88.889	Heterocephalus_glaber_female
ENSXMAG00000013524	cstf2	97	50.485	ENSHGLG00000013455	-	59	61.224	Heterocephalus_glaber_female
ENSXMAG00000013524	cstf2	78	61.555	ENSHGLG00100001130	-	86	88.889	Heterocephalus_glaber_male
ENSXMAG00000013524	cstf2	97	50.485	ENSHGLG00100015391	-	59	61.224	Heterocephalus_glaber_male
ENSXMAG00000013524	cstf2	97	78.505	ENSHCOG00000005157	cstf2	65	88.218	Hippocampus_comes
ENSXMAG00000013524	cstf2	100	60.906	ENSIPUG00000017839	cstf2	68	72.464	Ictalurus_punctatus
ENSXMAG00000013524	cstf2	97	56.230	ENSSTOG00000023445	CSTF2	85	90.385	Ictidomys_tridecemlineatus
ENSXMAG00000013524	cstf2	97	55.644	ENSJJAG00000020507	Cstf2	85	90.385	Jaculus_jaculus
ENSXMAG00000013524	cstf2	100	80.112	ENSKMAG00000001068	cstf2	65	88.438	Kryptolebias_marmoratus
ENSXMAG00000013524	cstf2	97	60.791	ENSLACG00000015927	CSTF2	59	68.091	Latimeria_chalumnae
ENSXMAG00000013524	cstf2	97	67.851	ENSLOCG00000015300	cstf2	65	74.184	Lepisosteus_oculatus
ENSXMAG00000013524	cstf2	97	55.520	ENSLAFG00000000474	CSTF2	60	69.679	Loxodonta_africana
ENSXMAG00000013524	cstf2	97	57.426	ENSMFAG00000043888	CSTF2	58	70.497	Macaca_fascicularis
ENSXMAG00000013524	cstf2	97	57.426	ENSMMUG00000013008	CSTF2	58	70.497	Macaca_mulatta
ENSXMAG00000013524	cstf2	97	57.426	ENSMNEG00000041824	CSTF2	58	70.497	Macaca_nemestrina
ENSXMAG00000013524	cstf2	97	57.426	ENSMLEG00000036870	CSTF2	58	70.497	Mandrillus_leucophaeus
ENSXMAG00000013524	cstf2	95	81.731	ENSMAMG00000020364	cstf2	64	89.375	Mastacembelus_armatus
ENSXMAG00000013524	cstf2	100	80.863	ENSMZEG00005007200	cstf2	65	88.855	Maylandia_zebra
ENSXMAG00000013524	cstf2	90	69.512	ENSMGAG00000004139	CSTF2	85	81.159	Meleagris_gallopavo
ENSXMAG00000013524	cstf2	97	58.615	ENSMAUG00000000965	Cstf2	58	69.461	Mesocricetus_auratus
ENSXMAG00000013524	cstf2	96	76.408	ENSMICG00000014121	CSTF2	95	63.010	Microcebus_murinus
ENSXMAG00000013524	cstf2	97	57.072	ENSMOCG00000008081	Cstf2	78	79.839	Microtus_ochrogaster
ENSXMAG00000013524	cstf2	100	68.868	ENSMMOG00000000538	cstf2	66	78.778	Mola_mola
ENSXMAG00000013524	cstf2	97	55.346	ENSMODG00000011785	CSTF2	60	70.423	Monodelphis_domestica
ENSXMAG00000013524	cstf2	97	57.912	MGP_CAROLIEiJ_G0033383	Cstf2	85	91.026	Mus_caroli
ENSXMAG00000013524	cstf2	97	57.500	ENSMUSG00000031256	Cstf2	85	91.026	Mus_musculus
ENSXMAG00000013524	cstf2	97	60.387	MGP_PahariEiJ_G0031923	Cstf2	82	62.760	Mus_pahari
ENSXMAG00000013524	cstf2	79	75.887	MGP_SPRETEiJ_G0034548	Cstf2	85	91.026	Mus_spretus
ENSXMAG00000013524	cstf2	96	77.037	ENSMPUG00000002339	CSTF2	82	62.595	Mustela_putorius_furo
ENSXMAG00000013524	cstf2	93	80.952	ENSMLUG00000004598	CSTF2	81	61.266	Myotis_lucifugus
ENSXMAG00000013524	cstf2	97	60.034	ENSNGAG00000021985	Cstf2	59	69.679	Nannospalax_galili
ENSXMAG00000013524	cstf2	93	71.456	ENSNBRG00000021694	cstf2	71	85.893	Neolamprologus_brichardi
ENSXMAG00000013524	cstf2	97	57.426	ENSNLEG00000007510	CSTF2	58	71.171	Nomascus_leucogenys
ENSXMAG00000013524	cstf2	79	62.473	ENSMEUG00000011186	-	60	73.731	Notamacropus_eugenii
ENSXMAG00000013524	cstf2	97	57.807	ENSMEUG00000007875	-	60	72.836	Notamacropus_eugenii
ENSXMAG00000013524	cstf2	88	56.691	ENSMEUG00000014025	-	58	70.000	Notamacropus_eugenii
ENSXMAG00000013524	cstf2	84	75.897	ENSOPRG00000003106	CSTF2	64	75.127	Ochotona_princeps
ENSXMAG00000013524	cstf2	78	63.043	ENSODEG00000002059	CSTF2	59	69.096	Octodon_degus
ENSXMAG00000013524	cstf2	92	91.463	ENSONIG00000002631	cstf2	73	98.551	Oreochromis_niloticus
ENSXMAG00000013524	cstf2	86	82.692	ENSOANG00000004208	CSTF2	61	84.483	Ornithorhynchus_anatinus
ENSXMAG00000013524	cstf2	97	55.929	ENSOCUG00000010468	CSTF2	59	71.429	Oryctolagus_cuniculus
ENSXMAG00000013524	cstf2	97	79.104	ENSORLG00000001380	cstf2	65	86.647	Oryzias_latipes
ENSXMAG00000013524	cstf2	97	79.104	ENSORLG00020021917	cstf2	65	86.647	Oryzias_latipes_hni
ENSXMAG00000013524	cstf2	97	79.291	ENSORLG00015011996	cstf2	65	86.944	Oryzias_latipes_hsok
ENSXMAG00000013524	cstf2	100	79.892	ENSOMEG00000015507	cstf2	66	86.095	Oryzias_melastigma
ENSXMAG00000013524	cstf2	96	75.636	ENSOGAG00000011192	CSTF2	95	61.480	Otolemur_garnettii
ENSXMAG00000013524	cstf2	97	57.591	ENSPPAG00000031804	CSTF2	58	71.171	Pan_paniscus
ENSXMAG00000013524	cstf2	97	57.591	ENSPTRG00000022090	CSTF2	58	71.171	Pan_troglodytes
ENSXMAG00000013524	cstf2	96	75.357	ENSPANG00000002303	CSTF2	95	61.735	Papio_anubis
ENSXMAG00000013524	cstf2	100	67.446	ENSPKIG00000005033	cstf2	61	80.323	Paramormyrops_kingsleyae
ENSXMAG00000013524	cstf2	96	80.235	ENSPMGG00000006534	cstf2	65	90.997	Periophthalmus_magnuspinnatus
ENSXMAG00000013524	cstf2	97	56.557	ENSPEMG00000019415	Cstf2	65	80.645	Peromyscus_maniculatus_bairdii
ENSXMAG00000013524	cstf2	79	61.506	ENSPCIG00000002989	CSTF2	51	72.671	Phascolarctos_cinereus
ENSXMAG00000013524	cstf2	100	93.421	ENSPLAG00000011176	cstf2	100	93.421	Poecilia_latipinna
ENSXMAG00000013524	cstf2	100	93.585	ENSPMEG00000017743	cstf2	100	93.585	Poecilia_mexicana
ENSXMAG00000013524	cstf2	100	97.122	ENSPREG00000011481	cstf2	100	97.122	Poecilia_reticulata
ENSXMAG00000013524	cstf2	94	48.587	ENSPVAG00000008342	CSTF2	65	60.305	Pteropus_vampyrus
ENSXMAG00000013524	cstf2	100	74.453	ENSPNYG00000010852	cstf2	64	84.783	Pundamilia_nyererei
ENSXMAG00000013524	cstf2	96	63.684	ENSPNAG00000018887	cstf2	69	72.829	Pygocentrus_nattereri
ENSXMAG00000013524	cstf2	97	59.864	ENSRNOG00000048025	Cstf2	58	70.149	Rattus_norvegicus
ENSXMAG00000013524	cstf2	97	57.380	ENSRBIG00000030745	CSTF2	58	70.497	Rhinopithecus_bieti
ENSXMAG00000013524	cstf2	97	57.426	ENSRROG00000045042	CSTF2	58	70.497	Rhinopithecus_roxellana
ENSXMAG00000013524	cstf2	96	75.180	ENSSBOG00000021649	CSTF2	95	62.245	Saimiri_boliviensis_boliviensis
ENSXMAG00000013524	cstf2	87	84.615	ENSSHAG00000003681	CSTF2	62	86.207	Sarcophilus_harrisii
ENSXMAG00000013524	cstf2	97	68.108	ENSSFOG00015006348	cstf2	67	74.930	Scleropages_formosus
ENSXMAG00000013524	cstf2	100	78.113	ENSSMAG00000013463	cstf2	65	89.728	Scophthalmus_maximus
ENSXMAG00000013524	cstf2	69	83.401	ENSSPUG00000005288	-	81	83.884	Sphenodon_punctatus
ENSXMAG00000013524	cstf2	97	56.564	ENSSSCG00000012486	CSTF2	83	81.481	Sus_scrofa
ENSXMAG00000013524	cstf2	97	59.899	ENSTGUG00000002253	CSTF2	79	81.746	Taeniopygia_guttata
ENSXMAG00000013524	cstf2	98	72.395	ENSTNIG00000016860	cstf2	65	81.595	Tetraodon_nigroviridis
ENSXMAG00000013524	cstf2	59	98.780	ENSTBEG00000010029	-	60	98.780	Tupaia_belangeri
ENSXMAG00000013524	cstf2	96	77.037	ENSUAMG00000026605	CSTF2	82	62.500	Ursus_americanus
ENSXMAG00000013524	cstf2	97	59.222	ENSUMAG00000012417	CSTF2	88	80.321	Ursus_maritimus
ENSXMAG00000013524	cstf2	70	70.536	ENSVPAG00000006466	CSTF2	70	68.657	Vicugna_pacos
ENSXMAG00000013524	cstf2	89	79.412	ENSXETG00000009642	cstf2	65	79.412	Xenopus_tropicalis
ENSXMAG00000013524	cstf2	97	71.781	ENSXCOG00000016436	cstf2	92	98.485	Xiphophorus_couchianus