EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000013834 (Gene tree)
Gene ID
102223444
Gene Symbol
patl1
Alias
fa11d04|wu:fa11d04|zgc:158239
Full Name
PAT1 homolog 1%2C processing body mRNA decay factor
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
11757 bases
Position
chr5:812066-823822
Accession
102223444
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000013869PAT1PF09770.95.2e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000013886-3834XM_023334316ENSXMAP00000013869799 (aa)XP_023190084M4AHC5
Gene Model
Click here to download ENSXMAG00000013834's gene model file
Pathways
Pathway IDPathway NameSource
xma03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000013834's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000013834patl18456.164ENSG00000166889PATL16265.000Homo_sapiens
ENSXMAG00000013834patl19977.694ENSAPOG00000021290patl19986.842Acanthochromis_polyacanthus
ENSXMAG00000013834patl15435.762ENSAPOG00000022988patl25837.250Acanthochromis_polyacanthus
ENSXMAG00000013834patl15037.685ENSAMEG00000014997PATL27538.000Ailuropoda_melanoleuca
ENSXMAG00000013834patl18456.164ENSAMEG00000014215PATL16265.000Ailuropoda_melanoleuca
ENSXMAG00000013834patl19978.152ENSACIG00000005182patl19978.901Amphilophus_citrinellus
ENSXMAG00000013834patl19481.102ENSAOCG00000021993patl19580.446Amphiprion_ocellaris
ENSXMAG00000013834patl15135.597ENSAOCG00000023738patl25136.272Amphiprion_ocellaris
ENSXMAG00000013834patl110081.265ENSAPEG00000021391patl110083.454Amphiprion_percula
ENSXMAG00000013834patl15135.461ENSAPEG00000011299patl26136.203Amphiprion_percula
ENSXMAG00000013834patl110079.319ENSATEG00000002230patl110080.900Anabas_testudineus
ENSXMAG00000013834patl15136.000ENSATEG00000019567patl26036.776Anabas_testudineus
ENSXMAG00000013834patl16036.634ENSAPLG00000003980PATL26440.000Anas_platyrhynchos
ENSXMAG00000013834patl15248.060ENSAPLG00000013394PATL16453.943Anas_platyrhynchos
ENSXMAG00000013834patl17150.877ENSACAG00000006607PATL16261.017Anolis_carolinensis
ENSXMAG00000013834patl18456.164ENSANAG00000023078PATL16265.000Aotus_nancymaae
ENSXMAG00000013834patl110082.609ENSACLG00000005144patl110083.454Astatotilapia_calliptera
ENSXMAG00000013834patl15036.691ENSACLG00000010326patl25337.374Astatotilapia_calliptera
ENSXMAG00000013834patl19584.422ENSAMXG00000010731patl19485.965Astyanax_mexicanus
ENSXMAG00000013834patl15338.095ENSAMXG00000020293patl25738.653Astyanax_mexicanus
ENSXMAG00000013834patl18456.164ENSBTAG00000005913PATL15553.318Bos_taurus
ENSXMAG00000013834patl15336.486ENSCJAG00000002379PATL27237.745Callithrix_jacchus
ENSXMAG00000013834patl18456.164ENSCJAG00000016192PATL16265.000Callithrix_jacchus
ENSXMAG00000013834patl15038.350ENSCAFG00000013629PATL27338.557Canis_familiaris
ENSXMAG00000013834patl18456.164ENSCAFG00000007581PATL16265.000Canis_familiaris
ENSXMAG00000013834patl15038.350ENSCAFG00020022169PATL27238.557Canis_lupus_dingo
ENSXMAG00000013834patl18456.164ENSCAFG00020001648PATL16565.000Canis_lupus_dingo
ENSXMAG00000013834patl18456.164ENSCHIG00000025913PATL16365.000Capra_hircus
ENSXMAG00000013834patl15339.091ENSCHIG00000026665PATL27439.901Capra_hircus
ENSXMAG00000013834patl15337.246ENSTSYG00000032456PATL27237.965Carlito_syrichta
ENSXMAG00000013834patl18357.534ENSTSYG00000012748PATL16265.000Carlito_syrichta
ENSXMAG00000013834patl18460.000ENSCAPG00000013668PATL16266.667Cavia_aperea
ENSXMAG00000013834patl18460.000ENSCPOG00000006827PATL16166.667Cavia_porcellus
ENSXMAG00000013834patl18456.164ENSCCAG00000023759PATL16265.000Cebus_capucinus
ENSXMAG00000013834patl18456.164ENSCATG00000009629PATL16265.000Cercocebus_atys
ENSXMAG00000013834patl15035.885ENSCLAG00000014407PATL27337.662Chinchilla_lanigera
ENSXMAG00000013834patl18360.000ENSCLAG00000003427PATL16267.308Chinchilla_lanigera
ENSXMAG00000013834patl17549.696ENSCSAG00000006095PATL16153.081Chlorocebus_sabaeus
ENSXMAG00000013834patl16257.000ENSCHOG00000001611PATL18357.000Choloepus_hoffmanni
ENSXMAG00000013834patl15039.423ENSCPBG00000006150PATL26039.303Chrysemys_picta_bellii
ENSXMAG00000013834patl18455.556ENSCANG00000039197PATL16264.407Colobus_angolensis_palliatus
ENSXMAG00000013834patl15337.273ENSCANG00000013856PATL27238.710Colobus_angolensis_palliatus
ENSXMAG00000013834patl18265.000ENSCGRG00001024927Patl16265.000Cricetulus_griseus_chok1gshd
ENSXMAG00000013834patl18165.385ENSCGRG00000000461Patl16265.385Cricetulus_griseus_crigri
ENSXMAG00000013834patl110077.311ENSCSEG00000008261patl110080.072Cynoglossus_semilaevis
ENSXMAG00000013834patl15234.028ENSCSEG00000009438patl25734.684Cynoglossus_semilaevis
ENSXMAG00000013834patl19086.783ENSCVAG00000006664patl19986.783Cyprinodon_variegatus
ENSXMAG00000013834patl15134.211ENSCVAG00000016203patl26035.025Cyprinodon_variegatus
ENSXMAG00000013834patl110072.491ENSDARG00000017423patl110071.608Danio_rerio
ENSXMAG00000013834patl17353.846ENSDNOG00000038865PATL17652.370Dasypus_novemcinctus
ENSXMAG00000013834patl18457.534ENSDORG00000000237Patl16266.667Dipodomys_ordii
ENSXMAG00000013834patl15335.828ENSEASG00005017984PATL27136.500Equus_asinus_asinus
ENSXMAG00000013834patl110042.563ENSEASG00005007963PATL19265.000Equus_asinus_asinus
ENSXMAG00000013834patl15336.758ENSECAG00000013462PATL27237.562Equus_caballus
ENSXMAG00000013834patl110042.677ENSECAG00000011411PATL18565.385Equus_caballus
ENSXMAG00000013834patl16034.834ENSELUG00000023244patl25437.531Esox_lucius
ENSXMAG00000013834patl110073.006ENSELUG00000024249patl110072.073Esox_lucius
ENSXMAG00000013834patl15338.128ENSFCAG00000027170PATL27339.055Felis_catus
ENSXMAG00000013834patl18456.164ENSFCAG00000015573PATL16265.000Felis_catus
ENSXMAG00000013834patl16034.653ENSFALG00000009768PATL25538.131Ficedula_albicollis
ENSXMAG00000013834patl18652.000ENSFALG00000012150PATL19266.071Ficedula_albicollis
ENSXMAG00000013834patl18356.923ENSFDAG00000016128PATL16265.385Fukomys_damarensis
ENSXMAG00000013834patl19987.500ENSFHEG00000017790patl110087.453Fundulus_heteroclitus
ENSXMAG00000013834patl15136.117ENSGMOG00000005666patl210036.893Gadus_morhua
ENSXMAG00000013834patl18949.470ENSGALG00000042641PATL19468.333Gallus_gallus
ENSXMAG00000013834patl15535.821ENSGALG00000002167PATL25037.871Gallus_gallus
ENSXMAG00000013834patl110097.747ENSGAFG00000006508patl110097.747Gambusia_affinis
ENSXMAG00000013834patl15135.597ENSGAFG00000019344patl25636.591Gambusia_affinis
ENSXMAG00000013834patl19970.652ENSGACG00000016448patl18988.010Gasterosteus_aculeatus
ENSXMAG00000013834patl18368.333ENSGAGG00000004461PATL19368.333Gopherus_agassizii
ENSXMAG00000013834patl18456.164ENSGGOG00000004335PATL16465.000Gorilla_gorilla
ENSXMAG00000013834patl110082.609ENSHBUG00000005365patl110083.454Haplochromis_burtoni
ENSXMAG00000013834patl15036.779ENSHBUG00000005929patl26037.121Haplochromis_burtoni
ENSXMAG00000013834patl18458.904ENSHGLG00000018173PATL16266.667Heterocephalus_glaber_female
ENSXMAG00000013834patl18254.839ENSHGLG00100003453PATL16260.417Heterocephalus_glaber_male
ENSXMAG00000013834patl15135.765ENSHCOG00000016754patl25436.272Hippocampus_comes
ENSXMAG00000013834patl110075.210ENSHCOG00000001898patl110075.841Hippocampus_comes
ENSXMAG00000013834patl15835.039ENSIPUG00000020692patl25638.404Ictalurus_punctatus
ENSXMAG00000013834patl15536.543ENSSTOG00000033848PATL27238.670Ictidomys_tridecemlineatus
ENSXMAG00000013834patl18256.452ENSSTOG00000013764PATL19167.347Ictidomys_tridecemlineatus
ENSXMAG00000013834patl18356.923ENSJJAG00000010135Patl16267.308Jaculus_jaculus
ENSXMAG00000013834patl110084.439ENSKMAG00000020848patl110084.364Kryptolebias_marmoratus
ENSXMAG00000013834patl15237.500ENSLBEG00000022344patl25338.384Labrus_bergylta
ENSXMAG00000013834patl110081.348ENSLBEG00000023617patl110082.190Labrus_bergylta
ENSXMAG00000013834patl17865.455ENSLACG00000004640PATL16368.750Latimeria_chalumnae
ENSXMAG00000013834patl110062.136ENSLOCG00000000717patl110062.470Lepisosteus_oculatus
ENSXMAG00000013834patl15136.047ENSLAFG00000031124PATL27138.083Loxodonta_africana
ENSXMAG00000013834patl18456.164ENSLAFG00000015161PATL16265.000Loxodonta_africana
ENSXMAG00000013834patl18456.164ENSMFAG00000040851PATL16265.000Macaca_fascicularis
ENSXMAG00000013834patl18456.164ENSMMUG00000017287PATL16265.000Macaca_mulatta
ENSXMAG00000013834patl18456.164ENSMNEG00000038692PATL16265.000Macaca_nemestrina
ENSXMAG00000013834patl18456.164ENSMLEG00000030044PATL16265.000Mandrillus_leucophaeus
ENSXMAG00000013834patl110079.518ENSMAMG00000003950patl110080.964Mastacembelus_armatus
ENSXMAG00000013834patl15035.167ENSMAMG00000013327patl26036.203Mastacembelus_armatus
ENSXMAG00000013834patl15036.691ENSMZEG00005014292patl25337.374Maylandia_zebra
ENSXMAG00000013834patl110082.729ENSMZEG00005013404patl110083.575Maylandia_zebra
ENSXMAG00000013834patl15536.147ENSMGAG00000001309PATL26438.557Meleagris_gallopavo
ENSXMAG00000013834patl19242.821ENSMGAG00000003406PATL15969.643Meleagris_gallopavo
ENSXMAG00000013834patl17544.547ENSMAUG00000012059Patl17355.844Mesocricetus_auratus
ENSXMAG00000013834patl15036.124ENSMAUG00000001008Patl27536.543Mesocricetus_auratus
ENSXMAG00000013834patl18356.164ENSMICG00000004172PATL16065.000Microcebus_murinus
ENSXMAG00000013834patl17550.912ENSMOCG00000010087Patl15553.791Microtus_ochrogaster
ENSXMAG00000013834patl17894.828ENSMMOG00000013711patl19294.828Mola_mola
ENSXMAG00000013834patl15338.293ENSMODG00000017690PATL27139.277Monodelphis_domestica
ENSXMAG00000013834patl17550.523ENSMODG00000020201PATL18547.898Monodelphis_domestica
ENSXMAG00000013834patl19572.513ENSMALG00000018706patl15590.027Monopterus_albus
ENSXMAG00000013834patl18457.534MGP_CAROLIEiJ_G0022739Patl16265.000Mus_caroli
ENSXMAG00000013834patl18457.534ENSMUSG00000046139Patl16265.000Mus_musculus
ENSXMAG00000013834patl18457.534MGP_PahariEiJ_G0014233Patl16265.000Mus_pahari
ENSXMAG00000013834patl18457.534MGP_SPRETEiJ_G0023652Patl16265.000Mus_spretus
ENSXMAG00000013834patl18456.164ENSMPUG00000014607PATL16265.000Mustela_putorius_furo
ENSXMAG00000013834patl18456.164ENSMLUG00000011169PATL16465.000Myotis_lucifugus
ENSXMAG00000013834patl18456.164ENSNGAG00000003682Patl16265.000Nannospalax_galili
ENSXMAG00000013834patl16973.604ENSNBRG00000015372patl19355.068Neolamprologus_brichardi
ENSXMAG00000013834patl15037.081ENSNBRG00000011745patl25737.531Neolamprologus_brichardi
ENSXMAG00000013834patl18356.164ENSNLEG00000013081PATL16465.000Nomascus_leucogenys
ENSXMAG00000013834patl15956.494ENSMEUG00000009391PATL17456.494Notamacropus_eugenii
ENSXMAG00000013834patl16154.762ENSOPRG00000007963PATL17654.762Ochotona_princeps
ENSXMAG00000013834patl15246.919ENSODEG00000001792PATL17053.459Octodon_degus
ENSXMAG00000013834patl110082.709ENSONIG00000004170patl19393.103Oreochromis_niloticus
ENSXMAG00000013834patl18456.164ENSOCUG00000002156PATL16265.000Oryctolagus_cuniculus
ENSXMAG00000013834patl15434.968ENSOCUG00000006339PATL27537.000Oryctolagus_cuniculus
ENSXMAG00000013834patl15136.534ENSORLG00000005780patl25437.093Oryzias_latipes
ENSXMAG00000013834patl15136.534ENSORLG00020016506patl25237.093Oryzias_latipes_hni
ENSXMAG00000013834patl17583.993ENSORLG00015022240patl17784.158Oryzias_latipes_hsok
ENSXMAG00000013834patl15136.534ENSORLG00015014500patl25437.093Oryzias_latipes_hsok
ENSXMAG00000013834patl15336.508ENSOGAG00000004709PATL27237.531Otolemur_garnettii
ENSXMAG00000013834patl18456.164ENSOGAG00000004351PATL16265.000Otolemur_garnettii
ENSXMAG00000013834patl18355.385ENSOARG00000012005PATL15965.385Ovis_aries
ENSXMAG00000013834patl15237.875ENSOARG00000003762PATL27239.098Ovis_aries
ENSXMAG00000013834patl18456.164ENSPPAG00000034275PATL16465.000Pan_paniscus
ENSXMAG00000013834patl15337.443ENSPPRG00000004279PATL27338.308Panthera_pardus
ENSXMAG00000013834patl18355.385ENSPPRG00000020639PATL16265.385Panthera_pardus
ENSXMAG00000013834patl15337.443ENSPTIG00000018964PATL27338.308Panthera_tigris_altaica
ENSXMAG00000013834patl18456.164ENSPTIG00000019298PATL16265.000Panthera_tigris_altaica
ENSXMAG00000013834patl18456.164ENSPTRG00000003697PATL19265.000Pan_troglodytes
ENSXMAG00000013834patl18456.164ENSPANG00000035620PATL16265.000Papio_anubis
ENSXMAG00000013834patl110072.311ENSPKIG00000016224patl110070.711Paramormyrops_kingsleyae
ENSXMAG00000013834patl18266.667ENSPSIG00000016206PATL16066.667Pelodiscus_sinensis
ENSXMAG00000013834patl15133.962ENSPMGG00000014550patl26235.101Periophthalmus_magnuspinnatus
ENSXMAG00000013834patl110078.695ENSPMGG00000002644patl110077.956Periophthalmus_magnuspinnatus
ENSXMAG00000013834patl15136.261ENSPEMG00000016509Patl27138.342Peromyscus_maniculatus_bairdii
ENSXMAG00000013834patl18265.000ENSPEMG00000014215Patl16265.000Peromyscus_maniculatus_bairdii
ENSXMAG00000013834patl15038.810ENSPCIG00000018256PATL27639.394Phascolarctos_cinereus
ENSXMAG00000013834patl18460.811ENSPCIG00000010852PATL16368.333Phascolarctos_cinereus
ENSXMAG00000013834patl110092.768ENSPFOG00000007768patl110095.771Poecilia_formosa
ENSXMAG00000013834patl110096.259ENSPLAG00000018465patl110096.259Poecilia_latipinna
ENSXMAG00000013834patl110096.010ENSPMEG00000006555patl110095.387Poecilia_mexicana
ENSXMAG00000013834patl18993.846ENSPREG00000003874patl19593.147Poecilia_reticulata
ENSXMAG00000013834patl18456.164ENSPPYG00000003230PATL16265.000Pongo_abelii
ENSXMAG00000013834patl15338.053ENSPCOG00000000295PATL29940.107Propithecus_coquereli
ENSXMAG00000013834patl18456.164ENSPCOG00000020770PATL19265.000Propithecus_coquereli
ENSXMAG00000013834patl17548.250ENSPVAG00000015239PATL16350.361Pteropus_vampyrus
ENSXMAG00000013834patl18590.373ENSPNYG00000018936patl19490.123Pundamilia_nyererei
ENSXMAG00000013834patl15036.538ENSPNYG00000017381patl26036.869Pundamilia_nyererei
ENSXMAG00000013834patl15237.694ENSPNAG00000002315patl25739.250Pygocentrus_nattereri
ENSXMAG00000013834patl110074.194ENSPNAG00000017907patl110074.286Pygocentrus_nattereri
ENSXMAG00000013834patl18457.534ENSRNOG00000021052Patl16265.000Rattus_norvegicus
ENSXMAG00000013834patl18456.164ENSRBIG00000032263PATL18265.000Rhinopithecus_bieti
ENSXMAG00000013834patl18456.164ENSRROG00000032861PATL16265.000Rhinopithecus_roxellana
ENSXMAG00000013834patl18456.164ENSSBOG00000025195PATL16465.000Saimiri_boliviensis_boliviensis
ENSXMAG00000013834patl18268.333ENSSHAG00000004309PATL16268.333Sarcophilus_harrisii
ENSXMAG00000013834patl110071.836ENSSFOG00015009614patl110072.739Scleropages_formosus
ENSXMAG00000013834patl110079.302ENSSMAG00000009482patl110080.649Scophthalmus_maximus
ENSXMAG00000013834patl15136.190ENSSMAG00000017262patl26336.709Scophthalmus_maximus
ENSXMAG00000013834patl15137.264ENSSDUG00000022927patl25438.131Seriola_dumerili
ENSXMAG00000013834patl110079.429ENSSDUG00000005362patl110080.737Seriola_dumerili
ENSXMAG00000013834patl15137.412ENSSLDG00000017922patl25937.626Seriola_lalandi_dorsalis
ENSXMAG00000013834patl110079.286ENSSLDG00000019146patl110080.476Seriola_lalandi_dorsalis
ENSXMAG00000013834patl15950.752ENSSARG00000009600PATL15554.502Sorex_araneus
ENSXMAG00000013834patl18361.972ENSSPUG00000009453PATL19271.667Sphenodon_punctatus
ENSXMAG00000013834patl19979.198ENSSPAG00000003187patl19979.323Stegastes_partitus
ENSXMAG00000013834patl15135.697ENSSPAG00000004784patl26136.524Stegastes_partitus
ENSXMAG00000013834patl18456.164ENSSSCG00000013124PATL16265.000Sus_scrofa
ENSXMAG00000013834patl19945.350ENSTGUG00000006222PATL16266.071Taeniopygia_guttata
ENSXMAG00000013834patl110068.867ENSTRUG00000000709patl110068.204Takifugu_rubripes
ENSXMAG00000013834patl17450.769ENSTBEG00000000796PATL15455.844Tupaia_belangeri
ENSXMAG00000013834patl16555.844ENSTTRG00000009389PATL18055.844Tursiops_truncatus
ENSXMAG00000013834patl15037.470ENSUAMG00000018533PATL27137.778Ursus_americanus
ENSXMAG00000013834patl18161.224ENSUMAG00000018634PATL19177.778Ursus_maritimus
ENSXMAG00000013834patl15037.470ENSUMAG00000007738PATL27137.778Ursus_maritimus
ENSXMAG00000013834patl18454.795ENSVVUG00000016668PATL19263.333Vulpes_vulpes
ENSXMAG00000013834patl15038.647ENSVVUG00000011576PATL27338.557Vulpes_vulpes
ENSXMAG00000013834patl17198.305ENSXCOG00000010808patl110098.305Xiphophorus_couchianus

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