EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000013862 (Gene tree)
Gene ID: 102225052
Gene Symbol: pop4
Alias: zgc:110597
Full Name: POP4 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 2358 bases
Position: chr4:34324211-34326568
Accession: 102225052
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000013893	UPF0086	PF01868.16	6.2e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000013910	-	702	XM_005812983	ENSXMAP00000013893	233 (aa)	XP_005813040	M4AHE9

Gene Model

Click here to download ENSXMAG00000013862's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG
xma03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000013862's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000013862	pop4	86	59.701	ENSG00000105171	POP4	100	73.958	Homo_sapiens
ENSXMAG00000013862	pop4	86	57.214	ENSAMEG00000018329	-	90	58.209	Ailuropoda_melanoleuca
ENSXMAG00000013862	pop4	88	51.208	ENSAMEG00000003172	-	92	51.208	Ailuropoda_melanoleuca
ENSXMAG00000013862	pop4	94	69.955	ENSACIG00000008358	pop4	100	69.955	Amphilophus_citrinellus
ENSXMAG00000013862	pop4	85	75.635	ENSAOCG00000010116	pop4	95	75.635	Amphiprion_ocellaris
ENSXMAG00000013862	pop4	97	67.965	ENSAPEG00000002829	pop4	97	67.965	Amphiprion_percula
ENSXMAG00000013862	pop4	93	73.423	ENSATEG00000013028	pop4	99	73.423	Anabas_testudineus
ENSXMAG00000013862	pop4	85	56.784	ENSAPLG00000014051	POP4	95	57.789	Anas_platyrhynchos
ENSXMAG00000013862	pop4	88	59.024	ENSANAG00000020295	POP4	92	60.680	Aotus_nancymaae
ENSXMAG00000013862	pop4	96	69.432	ENSACLG00000000526	pop4	99	69.820	Astatotilapia_calliptera
ENSXMAG00000013862	pop4	91	63.470	ENSAMXG00000002899	pop4	98	63.470	Astyanax_mexicanus
ENSXMAG00000013862	pop4	88	58.049	ENSBTAG00000002223	POP4	92	58.537	Bos_taurus
ENSXMAG00000013862	pop4	88	60.000	ENSCJAG00000046750	POP4	95	67.816	Callithrix_jacchus
ENSXMAG00000013862	pop4	63	69.178	ENSCAFG00000007630	POP4	93	64.943	Canis_familiaris
ENSXMAG00000013862	pop4	88	57.561	ENSCHIG00000016743	POP4	92	58.049	Capra_hircus
ENSXMAG00000013862	pop4	88	57.561	ENSTSYG00000003488	POP4	92	59.223	Carlito_syrichta
ENSXMAG00000013862	pop4	88	40.000	ENSCAPG00000011105	POP4	91	41.748	Cavia_aperea
ENSXMAG00000013862	pop4	88	57.073	ENSCPOG00000002992	POP4	92	58.738	Cavia_porcellus
ENSXMAG00000013862	pop4	61	61.702	ENSCCAG00000034244	-	69	60.784	Cebus_capucinus
ENSXMAG00000013862	pop4	88	58.537	ENSCCAG00000020285	-	92	60.194	Cebus_capucinus
ENSXMAG00000013862	pop4	86	61.386	ENSCATG00000036022	POP4	100	73.958	Cercocebus_atys
ENSXMAG00000013862	pop4	88	58.537	ENSCLAG00000013162	POP4	92	59.709	Chinchilla_lanigera
ENSXMAG00000013862	pop4	86	59.701	ENSCSAG00000004868	POP4	91	61.386	Chlorocebus_sabaeus
ENSXMAG00000013862	pop4	88	40.488	ENSCHOG00000002071	POP4	93	40.976	Choloepus_hoffmanni
ENSXMAG00000013862	pop4	93	55.405	ENSCPBG00000016132	POP4	99	55.856	Chrysemys_picta_bellii
ENSXMAG00000013862	pop4	52	36.585	ENSCING00000023871	-	62	36.585	Ciona_intestinalis
ENSXMAG00000013862	pop4	86	59.701	ENSCANG00000005924	POP4	98	61.386	Colobus_angolensis_palliatus
ENSXMAG00000013862	pop4	88	60.488	ENSCGRG00001017185	Pop4	92	60.488	Cricetulus_griseus_chok1gshd
ENSXMAG00000013862	pop4	88	60.488	ENSCGRG00000008155	Pop4	92	60.488	Cricetulus_griseus_crigri
ENSXMAG00000013862	pop4	94	62.780	ENSCSEG00000002946	pop4	100	62.780	Cynoglossus_semilaevis
ENSXMAG00000013862	pop4	97	57.391	ENSCVAG00000018602	POP4	99	57.391	Cyprinodon_variegatus
ENSXMAG00000013862	pop4	93	60.360	ENSDARG00000101472	pop4	99	60.811	Danio_rerio
ENSXMAG00000013862	pop4	88	57.561	ENSDNOG00000047663	POP4	81	59.223	Dasypus_novemcinctus
ENSXMAG00000013862	pop4	69	53.125	ENSDORG00000008577	Pop4	91	53.750	Dipodomys_ordii
ENSXMAG00000013862	pop4	74	30.000	FBgn0035831	CG8038	87	30.000	Drosophila_melanogaster
ENSXMAG00000013862	pop4	83	49.485	ENSETEG00000003607	POP4	88	51.282	Echinops_telfairi
ENSXMAG00000013862	pop4	64	53.691	ENSEBUG00000010447	pop4	63	50.000	Eptatretus_burgeri
ENSXMAG00000013862	pop4	83	40.686	ENSEBUG00000008575	pop4	93	40.686	Eptatretus_burgeri
ENSXMAG00000013862	pop4	64	46.980	ENSEBUG00000004305	pop4	68	44.375	Eptatretus_burgeri
ENSXMAG00000013862	pop4	88	67.308	ENSECAG00000020206	POP4	82	67.308	Equus_caballus
ENSXMAG00000013862	pop4	83	41.753	ENSEEUG00000013109	POP4	96	43.590	Erinaceus_europaeus
ENSXMAG00000013862	pop4	93	59.459	ENSELUG00000019812	pop4	99	59.910	Esox_lucius
ENSXMAG00000013862	pop4	86	58.209	ENSFCAG00000001619	POP4	90	58.706	Felis_catus
ENSXMAG00000013862	pop4	95	54.185	ENSFALG00000000206	POP4	99	55.947	Ficedula_albicollis
ENSXMAG00000013862	pop4	88	58.049	ENSFDAG00000017859	POP4	92	59.709	Fukomys_damarensis
ENSXMAG00000013862	pop4	85	73.737	ENSFHEG00000012745	pop4	89	73.737	Fundulus_heteroclitus
ENSXMAG00000013862	pop4	79	67.935	ENSGMOG00000000335	pop4	87	67.935	Gadus_morhua
ENSXMAG00000013862	pop4	94	54.911	ENSGALG00000041972	POP4	93	55.357	Gallus_gallus
ENSXMAG00000013862	pop4	74	90.395	ENSGAFG00000003571	pop4	98	90.395	Gambusia_affinis
ENSXMAG00000013862	pop4	93	69.369	ENSGACG00000014510	pop4	99	76.630	Gasterosteus_aculeatus
ENSXMAG00000013862	pop4	96	56.140	ENSGAGG00000024544	POP4	81	57.018	Gopherus_agassizii
ENSXMAG00000013862	pop4	86	59.701	ENSGGOG00000038346	POP4	90	61.386	Gorilla_gorilla
ENSXMAG00000013862	pop4	93	69.820	ENSHBUG00000021821	pop4	99	69.820	Haplochromis_burtoni
ENSXMAG00000013862	pop4	88	58.049	ENSHGLG00000015798	POP4	92	59.709	Heterocephalus_glaber_female
ENSXMAG00000013862	pop4	88	58.049	ENSHGLG00100009737	POP4	92	59.709	Heterocephalus_glaber_male
ENSXMAG00000013862	pop4	93	67.117	ENSHCOG00000020937	pop4	99	67.117	Hippocampus_comes
ENSXMAG00000013862	pop4	93	60.090	ENSIPUG00000013652	pop4	99	60.090	Ictalurus_punctatus
ENSXMAG00000013862	pop4	83	60.825	ENSSTOG00000011016	POP4	87	62.564	Ictidomys_tridecemlineatus
ENSXMAG00000013862	pop4	88	58.049	ENSJJAG00000013376	Pop4	92	59.223	Jaculus_jaculus
ENSXMAG00000013862	pop4	93	75.225	ENSKMAG00000012250	pop4	99	75.225	Kryptolebias_marmoratus
ENSXMAG00000013862	pop4	93	67.117	ENSLBEG00000014139	pop4	99	68.018	Labrus_bergylta
ENSXMAG00000013862	pop4	93	67.117	ENSLBEG00000018846	-	99	68.018	Labrus_bergylta
ENSXMAG00000013862	pop4	92	51.598	ENSLACG00000008581	POP4	97	52.055	Latimeria_chalumnae
ENSXMAG00000013862	pop4	93	59.009	ENSLOCG00000005597	pop4	99	59.009	Lepisosteus_oculatus
ENSXMAG00000013862	pop4	88	57.561	ENSLAFG00000000084	POP4	92	59.223	Loxodonta_africana
ENSXMAG00000013862	pop4	86	59.701	ENSMFAG00000029606	POP4	90	61.386	Macaca_fascicularis
ENSXMAG00000013862	pop4	86	60.697	ENSMMUG00000017424	POP4	90	61.386	Macaca_mulatta
ENSXMAG00000013862	pop4	86	60.697	ENSMNEG00000031374	POP4	90	61.386	Macaca_nemestrina
ENSXMAG00000013862	pop4	86	60.199	ENSMLEG00000043454	POP4	90	61.881	Mandrillus_leucophaeus
ENSXMAG00000013862	pop4	94	73.661	ENSMAMG00000011716	pop4	100	73.661	Mastacembelus_armatus
ENSXMAG00000013862	pop4	93	69.820	ENSMZEG00005002360	pop4	99	69.820	Maylandia_zebra
ENSXMAG00000013862	pop4	92	54.795	ENSMGAG00000005337	POP4	96	55.251	Meleagris_gallopavo
ENSXMAG00000013862	pop4	88	59.223	ENSMAUG00000020110	Pop4	92	58.654	Mesocricetus_auratus
ENSXMAG00000013862	pop4	88	60.488	ENSMICG00000035730	POP4	91	62.136	Microcebus_murinus
ENSXMAG00000013862	pop4	94	67.857	ENSMMOG00000015321	pop4	100	68.304	Mola_mola
ENSXMAG00000013862	pop4	94	53.125	ENSMODG00000029406	POP4	96	54.464	Monodelphis_domestica
ENSXMAG00000013862	pop4	93	71.622	ENSMALG00000012571	pop4	99	72.072	Monopterus_albus
ENSXMAG00000013862	pop4	88	61.463	MGP_CAROLIEiJ_G0029600	Pop4	92	61.463	Mus_caroli
ENSXMAG00000013862	pop4	88	60.488	ENSMUSG00000030423	Pop4	92	60.488	Mus_musculus
ENSXMAG00000013862	pop4	88	60.488	MGP_SPRETEiJ_G0030699	Pop4	92	61.165	Mus_spretus
ENSXMAG00000013862	pop4	88	51.942	ENSMPUG00000008063	-	92	52.427	Mustela_putorius_furo
ENSXMAG00000013862	pop4	88	58.049	ENSMPUG00000008041	-	92	58.537	Mustela_putorius_furo
ENSXMAG00000013862	pop4	88	46.602	ENSMLUG00000010774	POP4	92	47.087	Myotis_lucifugus
ENSXMAG00000013862	pop4	54	68.800	ENSMEUG00000003636	-	100	68.800	Notamacropus_eugenii
ENSXMAG00000013862	pop4	87	60.396	ENSOPRG00000004736	POP4	99	60.784	Ochotona_princeps
ENSXMAG00000013862	pop4	88	58.049	ENSODEG00000013025	POP4	95	59.223	Octodon_degus
ENSXMAG00000013862	pop4	96	68.996	ENSONIG00000003458	pop4	100	68.996	Oreochromis_niloticus
ENSXMAG00000013862	pop4	88	60.000	ENSOCUG00000015974	POP4	92	60.000	Oryctolagus_cuniculus
ENSXMAG00000013862	pop4	94	68.468	ENSORLG00000020317	pop4	100	68.468	Oryzias_latipes
ENSXMAG00000013862	pop4	93	67.568	ENSORLG00015011624	pop4	99	67.568	Oryzias_latipes_hsok
ENSXMAG00000013862	pop4	93	68.919	ENSOMEG00000002538	pop4	99	68.919	Oryzias_melastigma
ENSXMAG00000013862	pop4	91	58.491	ENSOGAG00000011168	POP4	95	60.094	Otolemur_garnettii
ENSXMAG00000013862	pop4	89	57.005	ENSOARG00000004041	POP4	92	57.488	Ovis_aries
ENSXMAG00000013862	pop4	86	59.701	ENSPPAG00000040372	POP4	90	61.386	Pan_paniscus
ENSXMAG00000013862	pop4	86	58.209	ENSPPRG00000010502	POP4	90	58.706	Panthera_pardus
ENSXMAG00000013862	pop4	86	58.209	ENSPTIG00000016598	POP4	90	58.706	Panthera_tigris_altaica
ENSXMAG00000013862	pop4	86	59.701	ENSPTRG00000010779	POP4	90	61.386	Pan_troglodytes
ENSXMAG00000013862	pop4	86	59.701	ENSPANG00000008546	POP4	90	61.386	Papio_anubis
ENSXMAG00000013862	pop4	83	64.948	ENSPKIG00000004468	pop4	85	64.948	Paramormyrops_kingsleyae
ENSXMAG00000013862	pop4	99	55.085	ENSPSIG00000015690	POP4	98	60.199	Pelodiscus_sinensis
ENSXMAG00000013862	pop4	83	63.265	ENSPMGG00000008608	pop4	94	64.286	Periophthalmus_magnuspinnatus
ENSXMAG00000013862	pop4	88	50.244	ENSPEMG00000019982	-	92	50.481	Peromyscus_maniculatus_bairdii
ENSXMAG00000013862	pop4	88	59.512	ENSPEMG00000014034	-	88	61.421	Peromyscus_maniculatus_bairdii
ENSXMAG00000013862	pop4	62	64.138	ENSPMAG00000006265	pop4	73	64.138	Petromyzon_marinus
ENSXMAG00000013862	pop4	88	56.585	ENSPCIG00000024738	POP4	87	56.585	Phascolarctos_cinereus
ENSXMAG00000013862	pop4	93	90.541	ENSPFOG00000000925	pop4	99	90.541	Poecilia_formosa
ENSXMAG00000013862	pop4	93	90.090	ENSPLAG00000003161	pop4	99	90.090	Poecilia_latipinna
ENSXMAG00000013862	pop4	93	90.541	ENSPMEG00000002475	pop4	99	90.541	Poecilia_mexicana
ENSXMAG00000013862	pop4	100	90.987	ENSPREG00000022403	pop4	100	90.987	Poecilia_reticulata
ENSXMAG00000013862	pop4	86	59.701	ENSPPYG00000009805	POP4	90	61.386	Pongo_abelii
ENSXMAG00000013862	pop4	87	58.911	ENSPCAG00000007737	POP4	90	59.406	Procavia_capensis
ENSXMAG00000013862	pop4	88	58.049	ENSPCOG00000018055	POP4	92	59.709	Propithecus_coquereli
ENSXMAG00000013862	pop4	88	58.454	ENSPVAG00000006069	POP4	92	58.454	Pteropus_vampyrus
ENSXMAG00000013862	pop4	93	69.369	ENSPNYG00000020038	pop4	99	69.369	Pundamilia_nyererei
ENSXMAG00000013862	pop4	93	61.883	ENSPNAG00000005591	pop4	99	61.883	Pygocentrus_nattereri
ENSXMAG00000013862	pop4	88	60.976	ENSRNOG00000027646	Pop4	92	60.976	Rattus_norvegicus
ENSXMAG00000013862	pop4	68	56.329	ENSRBIG00000044769	POP4	82	65.649	Rhinopithecus_bieti
ENSXMAG00000013862	pop4	86	59.701	ENSRROG00000028903	POP4	90	61.386	Rhinopithecus_roxellana
ENSXMAG00000013862	pop4	88	60.680	ENSSBOG00000032445	POP4	92	60.680	Saimiri_boliviensis_boliviensis
ENSXMAG00000013862	pop4	83	58.247	ENSSHAG00000016888	POP4	87	58.247	Sarcophilus_harrisii
ENSXMAG00000013862	pop4	94	58.590	ENSSFOG00015014556	pop4	100	58.590	Scleropages_formosus
ENSXMAG00000013862	pop4	93	72.973	ENSSMAG00000016611	pop4	99	72.973	Scophthalmus_maximus
ENSXMAG00000013862	pop4	94	69.333	ENSSDUG00000019865	pop4	90	69.333	Seriola_dumerili
ENSXMAG00000013862	pop4	100	64.807	ENSSLDG00000001763	pop4	100	68.889	Seriola_lalandi_dorsalis
ENSXMAG00000013862	pop4	88	60.000	ENSSARG00000004748	POP4	93	60.000	Sorex_araneus
ENSXMAG00000013862	pop4	94	72.889	ENSSPAG00000014364	pop4	100	72.889	Stegastes_partitus
ENSXMAG00000013862	pop4	88	57.561	ENSSSCG00000002854	POP4	92	57.561	Sus_scrofa
ENSXMAG00000013862	pop4	86	57.711	ENSTGUG00000008953	POP4	99	59.204	Taeniopygia_guttata
ENSXMAG00000013862	pop4	83	68.912	ENSTNIG00000006401	pop4	94	69.388	Tetraodon_nigroviridis
ENSXMAG00000013862	pop4	88	60.000	ENSTBEG00000002194	POP4	92	60.000	Tupaia_belangeri
ENSXMAG00000013862	pop4	86	58.209	ENSTTRG00000005882	POP4	90	58.209	Tursiops_truncatus
ENSXMAG00000013862	pop4	86	58.209	ENSUAMG00000003049	-	90	59.901	Ursus_americanus
ENSXMAG00000013862	pop4	86	58.209	ENSUMAG00000007522	-	90	59.901	Ursus_maritimus
ENSXMAG00000013862	pop4	86	57.711	ENSVVUG00000016876	-	69	58.209	Vulpes_vulpes
ENSXMAG00000013862	pop4	92	53.881	ENSXETG00000017598	pop4	98	53.881	Xenopus_tropicalis
ENSXMAG00000013862	pop4	100	100.000	ENSXCOG00000017695	pop4	100	100.000	Xiphophorus_couchianus