EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000013937 (Gene tree)
Gene ID: 102217454
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 7672 bases
Position: chr16:3188392-3196063
Accession: 102217454
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000013977	Btz	PF09405.10	9.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000013996	-	2359	XM_005810310	ENSXMAP00000013977	767 (aa)	XP_005810367	M4AHN3

Gene Model

Click here to download ENSXMAG00000013937's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000013937's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000013937	casc3	60	61.749	ENSG00000108349	CASC3	74	64.286	Homo_sapiens
ENSXMAG00000013937	casc3	100	72.158	ENSAPOG00000008467	casc3	100	72.866	Acanthochromis_polyacanthus
ENSXMAG00000013937	casc3	100	72.681	ENSAOCG00000016676	casc3	100	72.414	Amphiprion_ocellaris
ENSXMAG00000013937	casc3	100	72.173	ENSAPEG00000006787	casc3	100	72.286	Amphiprion_percula
ENSXMAG00000013937	casc3	100	75.127	ENSATEG00000017196	casc3	100	75.412	Anabas_testudineus
ENSXMAG00000013937	casc3	76	51.133	ENSANAG00000034820	-	79	48.555	Aotus_nancymaae
ENSXMAG00000013937	casc3	100	76.667	ENSACLG00000016198	casc3	100	76.667	Astatotilapia_calliptera
ENSXMAG00000013937	casc3	78	53.016	ENSBTAG00000006250	CASC3	70	60.847	Bos_taurus
ENSXMAG00000013937	casc3	78	51.393	ENSCJAG00000016032	CASC3	71	62.778	Callithrix_jacchus
ENSXMAG00000013937	casc3	77	52.941	ENSCAFG00020018882	CASC3	74	64.881	Canis_lupus_dingo
ENSXMAG00000013937	casc3	77	53.398	ENSCHIG00000006338	CASC3	71	60.317	Capra_hircus
ENSXMAG00000013937	casc3	69	52.427	ENSTSYG00000002975	CASC3	67	66.667	Carlito_syrichta
ENSXMAG00000013937	casc3	57	66.049	ENSCAPG00000010514	CASC3	77	66.460	Cavia_aperea
ENSXMAG00000013937	casc3	77	52.922	ENSCPOG00000015139	CASC3	85	53.517	Cavia_porcellus
ENSXMAG00000013937	casc3	78	52.548	ENSCCAG00000033620	CASC3	69	65.476	Cebus_capucinus
ENSXMAG00000013937	casc3	77	53.074	ENSCATG00000033593	CASC3	68	64.881	Cercocebus_atys
ENSXMAG00000013937	casc3	77	52.117	ENSCLAG00000013730	CASC3	50	50.141	Chinchilla_lanigera
ENSXMAG00000013937	casc3	99	43.387	ENSCPBG00000004750	CASC3	70	67.333	Chrysemys_picta_bellii
ENSXMAG00000013937	casc3	80	51.515	ENSCGRG00001014706	Casc3	70	63.158	Cricetulus_griseus_chok1gshd
ENSXMAG00000013937	casc3	80	51.515	ENSCGRG00000001952	Casc3	76	62.360	Cricetulus_griseus_crigri
ENSXMAG00000013937	casc3	100	67.750	ENSCSEG00000010047	casc3	100	67.710	Cynoglossus_semilaevis
ENSXMAG00000013937	casc3	100	80.804	ENSCVAG00000014935	casc3	100	81.193	Cyprinodon_variegatus
ENSXMAG00000013937	casc3	60	62.842	ENSETEG00000013720	CASC3	68	66.071	Echinops_telfairi
ENSXMAG00000013937	casc3	79	38.994	ENSEBUG00000010654	casc3	70	47.590	Eptatretus_burgeri
ENSXMAG00000013937	casc3	71	53.074	ENSEASG00005002909	CASC3	80	65.476	Equus_asinus_asinus
ENSXMAG00000013937	casc3	73	48.421	ENSFALG00000000412	CASC3	80	66.447	Ficedula_albicollis
ENSXMAG00000013937	casc3	73	51.711	ENSFDAG00000020696	CASC3	74	65.476	Fukomys_damarensis
ENSXMAG00000013937	casc3	100	81.266	ENSFHEG00000015793	casc3	100	81.137	Fundulus_heteroclitus
ENSXMAG00000013937	casc3	69	53.138	ENSGALG00000031813	CASC3	71	63.415	Gallus_gallus
ENSXMAG00000013937	casc3	98	94.195	ENSGAFG00000017148	casc3	86	93.955	Gambusia_affinis
ENSXMAG00000013937	casc3	57	67.105	ENSGAGG00000008432	CASC3	76	67.333	Gopherus_agassizii
ENSXMAG00000013937	casc3	77	50.479	ENSGGOG00000005067	CASC3	68	64.286	Gorilla_gorilla
ENSXMAG00000013937	casc3	100	76.923	ENSHBUG00000013155	casc3	100	76.923	Haplochromis_burtoni
ENSXMAG00000013937	casc3	60	60.428	ENSHGLG00000012117	CASC3	70	63.743	Heterocephalus_glaber_female
ENSXMAG00000013937	casc3	68	51.961	ENSHGLG00100002268	CASC3	79	62.570	Heterocephalus_glaber_male
ENSXMAG00000013937	casc3	100	62.788	ENSHCOG00000002664	casc3	95	60.509	Hippocampus_comes
ENSXMAG00000013937	casc3	79	50.621	ENSJJAG00000023525	Casc3	72	55.838	Jaculus_jaculus
ENSXMAG00000013937	casc3	93	79.675	ENSKMAG00000019507	casc3	98	79.207	Kryptolebias_marmoratus
ENSXMAG00000013937	casc3	96	69.270	ENSLBEG00000005435	casc3	100	70.762	Labrus_bergylta
ENSXMAG00000013937	casc3	79	50.779	ENSLACG00000013200	CASC3	66	52.830	Latimeria_chalumnae
ENSXMAG00000013937	casc3	68	66.239	ENSLOCG00000013518	casc3	64	66.239	Lepisosteus_oculatus
ENSXMAG00000013937	casc3	76	50.809	ENSLAFG00000000606	CASC3	69	64.881	Loxodonta_africana
ENSXMAG00000013937	casc3	77	53.074	ENSMFAG00000041496	CASC3	75	64.881	Macaca_fascicularis
ENSXMAG00000013937	casc3	77	53.074	ENSMMUG00000045187	CASC3	74	53.086	Macaca_mulatta
ENSXMAG00000013937	casc3	69	53.074	ENSMLEG00000029049	CASC3	82	53.086	Mandrillus_leucophaeus
ENSXMAG00000013937	casc3	96	72.090	ENSMAMG00000005235	casc3	96	72.053	Mastacembelus_armatus
ENSXMAG00000013937	casc3	100	76.667	ENSMZEG00005003815	casc3	100	76.667	Maylandia_zebra
ENSXMAG00000013937	casc3	72	48.397	ENSMGAG00000013247	CASC3	76	63.415	Meleagris_gallopavo
ENSXMAG00000013937	casc3	50	59.375	ENSMAUG00000006023	Casc3	62	69.444	Mesocricetus_auratus
ENSXMAG00000013937	casc3	80	52.134	ENSMOCG00000013644	Casc3	69	63.158	Microtus_ochrogaster
ENSXMAG00000013937	casc3	100	69.910	ENSMMOG00000014339	casc3	100	69.487	Mola_mola
ENSXMAG00000013937	casc3	53	72.308	ENSMODG00000013044	CASC3	56	77.586	Monodelphis_domestica
ENSXMAG00000013937	casc3	61	91.919	ENSMALG00000019771	casc3	82	90.090	Monopterus_albus
ENSXMAG00000013937	casc3	61	59.474	MGP_CAROLIEiJ_G0017099	Casc3	69	63.158	Mus_caroli
ENSXMAG00000013937	casc3	61	60.428	ENSMUSG00000078676	Casc3	69	63.158	Mus_musculus
ENSXMAG00000013937	casc3	61	62.857	MGP_SPRETEiJ_G0017943	Casc3	68	66.038	Mus_spretus
ENSXMAG00000013937	casc3	81	46.386	ENSMPUG00000014903	CASC3	68	64.881	Mustela_putorius_furo
ENSXMAG00000013937	casc3	57	64.596	ENSNGAG00000023121	Casc3	68	65.269	Nannospalax_galili
ENSXMAG00000013937	casc3	77	52.597	ENSNLEG00000001598	CASC3	68	63.690	Nomascus_leucogenys
ENSXMAG00000013937	casc3	77	52.077	ENSODEG00000017858	CASC3	68	67.296	Octodon_degus
ENSXMAG00000013937	casc3	100	76.786	ENSONIG00000009337	casc3	100	74.713	Oreochromis_niloticus
ENSXMAG00000013937	casc3	100	68.903	ENSORLG00000023125	casc3	100	66.581	Oryzias_latipes
ENSXMAG00000013937	casc3	59	61.749	ENSOGAG00000034486	CASC3	69	62.573	Otolemur_garnettii
ENSXMAG00000013937	casc3	77	53.398	ENSOARG00000013239	CASC3	75	53.628	Ovis_aries
ENSXMAG00000013937	casc3	77	50.479	ENSPPAG00000035069	CASC3	68	64.286	Pan_paniscus
ENSXMAG00000013937	casc3	70	51.792	ENSPTIG00000010891	CASC3	76	51.751	Panthera_tigris_altaica
ENSXMAG00000013937	casc3	77	52.751	ENSPANG00000021708	CASC3	52	64.881	Papio_anubis
ENSXMAG00000013937	casc3	71	49.837	ENSPCIG00000025678	CASC3	54	45.953	Phascolarctos_cinereus
ENSXMAG00000013937	casc3	99	85.417	ENSPFOG00000017632	casc3	96	94.054	Poecilia_formosa
ENSXMAG00000013937	casc3	100	91.484	ENSPLAG00000005268	casc3	100	91.355	Poecilia_latipinna
ENSXMAG00000013937	casc3	64	95.266	ENSPMEG00000010299	casc3	68	96.350	Poecilia_mexicana
ENSXMAG00000013937	casc3	78	95.199	ENSPREG00000011856	casc3	91	95.199	Poecilia_reticulata
ENSXMAG00000013937	casc3	77	52.443	ENSPPYG00000008467	CASC3	70	64.286	Pongo_abelii
ENSXMAG00000013937	casc3	100	76.923	ENSPNYG00000011962	casc3	100	76.923	Pundamilia_nyererei
ENSXMAG00000013937	casc3	62	59.896	ENSRNOG00000009716	Casc3	76	63.743	Rattus_norvegicus
ENSXMAG00000013937	casc3	60	62.842	ENSSBOG00000031406	CASC3	78	62.778	Saimiri_boliviensis_boliviensis
ENSXMAG00000013937	casc3	72	51.792	ENSSHAG00000013338	CASC3	71	68.966	Sarcophilus_harrisii
ENSXMAG00000013937	casc3	100	70.683	ENSSMAG00000016096	casc3	100	70.247	Scophthalmus_maximus
ENSXMAG00000013937	casc3	100	73.952	ENSSDUG00000016893	casc3	95	74.587	Seriola_dumerili
ENSXMAG00000013937	casc3	88	70.819	ENSSLDG00000020308	casc3	100	78.933	Seriola_lalandi_dorsalis
ENSXMAG00000013937	casc3	53	63.095	ENSSARG00000010378	CASC3	71	65.000	Sorex_araneus
ENSXMAG00000013937	casc3	100	75.665	ENSSPAG00000023008	casc3	100	72.005	Stegastes_partitus
ENSXMAG00000013937	casc3	69	52.941	ENSSSCG00000017477	CASC3	74	65.476	Sus_scrofa
ENSXMAG00000013937	casc3	68	48.765	ENSTGUG00000002300	CASC3	81	65.766	Taeniopygia_guttata
ENSXMAG00000013937	casc3	96	66.889	ENSTRUG00000000673	casc3	95	64.447	Takifugu_rubripes
ENSXMAG00000013937	casc3	100	62.692	ENSTNIG00000003208	casc3	91	72.046	Tetraodon_nigroviridis
ENSXMAG00000013937	casc3	77	52.716	ENSUAMG00000015116	CASC3	75	64.881	Ursus_americanus
ENSXMAG00000013937	casc3	69	52.716	ENSUMAG00000017697	CASC3	97	63.095	Ursus_maritimus