EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000014236 (Gene tree)
Gene ID: 102216432
Gene Symbol: bms1
Alias: bms1l|im:7152071|wu:fb37d08
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 19497 bases
Position: chr10:24566667-24586163
Accession: 102216432
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000014292	AARP2CN	PF08142.12	6.4e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000014312	-	4813	XM_023341277	ENSXMAP00000014292	1174 (aa)	XP_023197045	M4AIJ8

Gene Model

Click here to download ENSXMAG00000014236's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000014236's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000014236	bms1	97	65.637	ENSG00000165733	BMS1	85	67.149	Homo_sapiens
ENSXMAG00000014236	bms1	87	79.509	ENSAPOG00000002296	bms1	99	78.302	Acanthochromis_polyacanthus
ENSXMAG00000014236	bms1	97	65.896	ENSAMEG00000016834	BMS1	85	66.883	Ailuropoda_melanoleuca
ENSXMAG00000014236	bms1	99	77.637	ENSACIG00000002588	bms1	99	77.169	Amphilophus_citrinellus
ENSXMAG00000014236	bms1	99	80.033	ENSAOCG00000018088	bms1	99	79.665	Amphiprion_ocellaris
ENSXMAG00000014236	bms1	99	80.082	ENSAPEG00000014673	bms1	99	79.770	Amphiprion_percula
ENSXMAG00000014236	bms1	99	78.343	ENSATEG00000023465	bms1	99	78.115	Anabas_testudineus
ENSXMAG00000014236	bms1	91	70.567	ENSAPLG00000003759	BMS1	84	70.745	Anas_platyrhynchos
ENSXMAG00000014236	bms1	99	65.201	ENSACAG00000004537	-	85	67.851	Anolis_carolinensis
ENSXMAG00000014236	bms1	96	65.335	ENSANAG00000023432	BMS1	85	66.191	Aotus_nancymaae
ENSXMAG00000014236	bms1	99	78.148	ENSACLG00000001294	bms1	99	77.741	Astatotilapia_calliptera
ENSXMAG00000014236	bms1	53	75.402	ENSAMXG00000011236	bms1	50	74.920	Astyanax_mexicanus
ENSXMAG00000014236	bms1	99	67.248	ENSBTAG00000012878	BMS1	85	68.660	Bos_taurus
ENSXMAG00000014236	bms1	87	54.271	WBGene00022021	Y61A9LA.10	91	56.593	Caenorhabditis_elegans
ENSXMAG00000014236	bms1	99	65.058	ENSCJAG00000021705	BMS1	85	66.559	Callithrix_jacchus
ENSXMAG00000014236	bms1	96	67.375	ENSCAFG00000007114	BMS1	85	67.360	Canis_familiaris
ENSXMAG00000014236	bms1	96	67.375	ENSCAFG00020025282	BMS1	85	67.360	Canis_lupus_dingo
ENSXMAG00000014236	bms1	99	67.442	ENSCHIG00000023251	BMS1	85	68.866	Capra_hircus
ENSXMAG00000014236	bms1	98	65.152	ENSCAPG00000008652	BMS1	85	66.526	Cavia_aperea
ENSXMAG00000014236	bms1	98	66.098	ENSCPOG00000000502	BMS1	85	66.872	Cavia_porcellus
ENSXMAG00000014236	bms1	99	55.919	ENSCCAG00000024969	-	75	56.958	Cebus_capucinus
ENSXMAG00000014236	bms1	81	55.508	ENSCATG00000008695	-	75	55.481	Cercocebus_atys
ENSXMAG00000014236	bms1	97	65.764	ENSCATG00000030625	-	85	66.874	Cercocebus_atys
ENSXMAG00000014236	bms1	95	67.573	ENSCLAG00000002446	BMS1	85	68.267	Chinchilla_lanigera
ENSXMAG00000014236	bms1	97	65.170	ENSCSAG00000011118	BMS1	85	66.944	Chlorocebus_sabaeus
ENSXMAG00000014236	bms1	99	63.855	ENSCHOG00000011055	BMS1	85	66.318	Choloepus_hoffmanni
ENSXMAG00000014236	bms1	96	69.144	ENSCPBG00000025581	BMS1	85	67.983	Chrysemys_picta_bellii
ENSXMAG00000014236	bms1	85	62.720	ENSCING00000003181	-	94	64.021	Ciona_intestinalis
ENSXMAG00000014236	bms1	80	53.647	ENSCSAVG00000004113	-	87	54.023	Ciona_savignyi
ENSXMAG00000014236	bms1	97	65.957	ENSCANG00000011609	BMS1	85	66.530	Colobus_angolensis_palliatus
ENSXMAG00000014236	bms1	98	60.642	ENSCGRG00001019461	Bms1	87	66.258	Cricetulus_griseus_chok1gshd
ENSXMAG00000014236	bms1	98	60.642	ENSCGRG00000009016	Bms1	86	66.258	Cricetulus_griseus_crigri
ENSXMAG00000014236	bms1	99	74.209	ENSCSEG00000002469	bms1	99	74.290	Cynoglossus_semilaevis
ENSXMAG00000014236	bms1	99	85.666	ENSCVAG00000008371	bms1	99	86.756	Cyprinodon_variegatus
ENSXMAG00000014236	bms1	99	70.752	ENSDARG00000054154	bms1	88	74.349	Danio_rerio
ENSXMAG00000014236	bms1	99	64.839	ENSDNOG00000015761	BMS1	85	66.290	Dasypus_novemcinctus
ENSXMAG00000014236	bms1	95	67.633	ENSDORG00000002982	Bms1	85	67.775	Dipodomys_ordii
ENSXMAG00000014236	bms1	84	66.964	ENSETEG00000009554	BMS1	75	66.964	Echinops_telfairi
ENSXMAG00000014236	bms1	95	66.351	ENSEASG00005006894	BMS1	86	67.317	Equus_asinus_asinus
ENSXMAG00000014236	bms1	95	66.193	ENSECAG00000001358	BMS1	85	67.154	Equus_caballus
ENSXMAG00000014236	bms1	99	71.814	ENSELUG00000001756	bms1	72	88.571	Esox_lucius
ENSXMAG00000014236	bms1	95	73.103	ENSFCAG00000011220	BMS1	85	66.942	Felis_catus
ENSXMAG00000014236	bms1	95	69.726	ENSFALG00000006882	BMS1	84	69.565	Ficedula_albicollis
ENSXMAG00000014236	bms1	99	62.455	ENSFDAG00000001422	BMS1	85	67.227	Fukomys_damarensis
ENSXMAG00000014236	bms1	99	87.004	ENSFHEG00000003367	bms1	99	85.907	Fundulus_heteroclitus
ENSXMAG00000014236	bms1	99	70.908	ENSGMOG00000000718	bms1	53	75.968	Gadus_morhua
ENSXMAG00000014236	bms1	99	61.835	ENSGALG00000002624	BMS1	84	69.628	Gallus_gallus
ENSXMAG00000014236	bms1	57	88.690	ENSGAFG00000009067	bms1	96	85.207	Gambusia_affinis
ENSXMAG00000014236	bms1	97	82.229	ENSGACG00000015334	bms1	88	81.906	Gasterosteus_aculeatus
ENSXMAG00000014236	bms1	96	69.156	ENSGAGG00000003467	BMS1	89	67.850	Gopherus_agassizii
ENSXMAG00000014236	bms1	99	78.018	ENSHBUG00000022628	bms1	99	77.852	Haplochromis_burtoni
ENSXMAG00000014236	bms1	99	65.129	ENSHGLG00000000477	BMS1	87	66.402	Heterocephalus_glaber_female
ENSXMAG00000014236	bms1	99	65.129	ENSHGLG00100002176	BMS1	87	66.402	Heterocephalus_glaber_male
ENSXMAG00000014236	bms1	99	78.125	ENSHCOG00000017604	bms1	99	77.806	Hippocampus_comes
ENSXMAG00000014236	bms1	99	68.716	ENSIPUG00000017855	bms1	50	76.320	Ictalurus_punctatus
ENSXMAG00000014236	bms1	98	66.284	ENSSTOG00000015063	BMS1	85	68.595	Ictidomys_tridecemlineatus
ENSXMAG00000014236	bms1	99	64.885	ENSJJAG00000017328	Bms1	86	68.134	Jaculus_jaculus
ENSXMAG00000014236	bms1	65	76.843	ENSKMAG00000021982	bms1	97	76.031	Kryptolebias_marmoratus
ENSXMAG00000014236	bms1	99	76.053	ENSLBEG00000028208	bms1	99	74.794	Labrus_bergylta
ENSXMAG00000014236	bms1	95	65.076	ENSLACG00000001600	BMS1	86	66.528	Latimeria_chalumnae
ENSXMAG00000014236	bms1	55	73.788	ENSLOCG00000012914	bms1	51	75.796	Lepisosteus_oculatus
ENSXMAG00000014236	bms1	99	63.804	ENSLAFG00000006250	BMS1	85	65.909	Loxodonta_africana
ENSXMAG00000014236	bms1	88	66.216	ENSMFAG00000037771	BMS1	93	67.152	Macaca_fascicularis
ENSXMAG00000014236	bms1	87	59.848	ENSMMUG00000007426	-	82	61.723	Macaca_mulatta
ENSXMAG00000014236	bms1	79	53.229	ENSMLEG00000029084	-	77	54.184	Mandrillus_leucophaeus
ENSXMAG00000014236	bms1	99	77.492	ENSMAMG00000020855	bms1	99	76.246	Mastacembelus_armatus
ENSXMAG00000014236	bms1	99	78.065	ENSMZEG00005005663	bms1	99	77.658	Maylandia_zebra
ENSXMAG00000014236	bms1	91	69.256	ENSMGAG00000001170	BMS1	86	69.628	Meleagris_gallopavo
ENSXMAG00000014236	bms1	98	60.945	ENSMAUG00000002195	Bms1	87	67.775	Mesocricetus_auratus
ENSXMAG00000014236	bms1	99	64.783	ENSMICG00000009977	BMS1	85	66.397	Microcebus_murinus
ENSXMAG00000014236	bms1	98	65.250	ENSMOCG00000002038	Bms1	85	66.883	Microtus_ochrogaster
ENSXMAG00000014236	bms1	99	78.363	ENSMMOG00000000977	bms1	99	78.195	Mola_mola
ENSXMAG00000014236	bms1	99	64.684	ENSMODG00000001177	BMS1	85	68.109	Monodelphis_domestica
ENSXMAG00000014236	bms1	99	79.039	ENSMALG00000009680	bms1	99	78.319	Monopterus_albus
ENSXMAG00000014236	bms1	83	59.416	MGP_CAROLIEiJ_G0028785	-	59	77.838	Mus_caroli
ENSXMAG00000014236	bms1	98	62.162	ENSMUSG00000030138	Bms1	85	65.747	Mus_musculus
ENSXMAG00000014236	bms1	98	64.797	MGP_PahariEiJ_G0022539	Bms1	85	66.558	Mus_pahari
ENSXMAG00000014236	bms1	98	59.563	MGP_SPRETEiJ_G0029816	Bms1	85	65.747	Mus_spretus
ENSXMAG00000014236	bms1	98	66.154	ENSMPUG00000017276	BMS1	85	67.480	Mustela_putorius_furo
ENSXMAG00000014236	bms1	99	59.908	ENSMLUG00000003260	BMS1	85	66.397	Myotis_lucifugus
ENSXMAG00000014236	bms1	99	56.500	ENSNGAG00000015258	Bms1	80	66.505	Nannospalax_galili
ENSXMAG00000014236	bms1	97	65.310	ENSNLEG00000015791	BMS1	85	67.292	Nomascus_leucogenys
ENSXMAG00000014236	bms1	86	77.805	ENSOPRG00000005195	BMS1	77	79.459	Ochotona_princeps
ENSXMAG00000014236	bms1	98	65.844	ENSODEG00000005554	BMS1	85	67.490	Octodon_degus
ENSXMAG00000014236	bms1	99	78.387	ENSONIG00000007227	bms1	99	77.907	Oreochromis_niloticus
ENSXMAG00000014236	bms1	98	67.311	ENSOANG00000000662	-	79	75.862	Ornithorhynchus_anatinus
ENSXMAG00000014236	bms1	99	67.115	ENSOCUG00000005354	BMS1	85	69.133	Oryctolagus_cuniculus
ENSXMAG00000014236	bms1	99	80.034	ENSORLG00000014655	bms1	99	79.694	Oryzias_latipes
ENSXMAG00000014236	bms1	99	77.351	ENSORLG00020016246	bms1	99	76.987	Oryzias_latipes_hni
ENSXMAG00000014236	bms1	99	77.933	ENSORLG00015014183	bms1	99	77.575	Oryzias_latipes_hsok
ENSXMAG00000014236	bms1	99	80.402	ENSOMEG00000015042	bms1	99	79.983	Oryzias_melastigma
ENSXMAG00000014236	bms1	99	60.462	ENSOGAG00000006511	BMS1	85	67.208	Otolemur_garnettii
ENSXMAG00000014236	bms1	99	66.923	ENSOARG00000003900	BMS1	85	68.098	Ovis_aries
ENSXMAG00000014236	bms1	97	65.444	ENSPPAG00000027837	BMS1	85	66.942	Pan_paniscus
ENSXMAG00000014236	bms1	99	65.251	ENSPPRG00000001311	BMS1	85	66.883	Panthera_pardus
ENSXMAG00000014236	bms1	99	64.808	ENSPTIG00000009652	BMS1	84	66.598	Panthera_tigris_altaica
ENSXMAG00000014236	bms1	97	65.533	ENSPTRG00000002441	BMS1	85	67.992	Pan_troglodytes
ENSXMAG00000014236	bms1	97	76.404	ENSPKIG00000008165	bms1	85	76.404	Paramormyrops_kingsleyae
ENSXMAG00000014236	bms1	96	67.685	ENSPSIG00000006481	BMS1	84	69.198	Pelodiscus_sinensis
ENSXMAG00000014236	bms1	98	65.873	ENSPEMG00000022467	Bms1	85	67.089	Peromyscus_maniculatus_bairdii
ENSXMAG00000014236	bms1	95	68.123	ENSPCIG00000001339	BMS1	80	72.581	Phascolarctos_cinereus
ENSXMAG00000014236	bms1	97	96.169	ENSPFOG00000015180	bms1	100	96.008	Poecilia_formosa
ENSXMAG00000014236	bms1	100	96.441	ENSPMEG00000023176	bms1	95	96.441	Poecilia_mexicana
ENSXMAG00000014236	bms1	100	96.186	ENSPREG00000002695	bms1	99	96.186	Poecilia_reticulata
ENSXMAG00000014236	bms1	53	65.251	ENSPPYG00000002836	-	75	66.942	Pongo_abelii
ENSXMAG00000014236	bms1	72	75.342	ENSPCAG00000014528	BMS1	72	68.261	Procavia_capensis
ENSXMAG00000014236	bms1	94	66.595	ENSPCOG00000023834	-	85	67.108	Propithecus_coquereli
ENSXMAG00000014236	bms1	99	63.894	ENSPVAG00000000725	BMS1	86	65.428	Pteropus_vampyrus
ENSXMAG00000014236	bms1	99	76.967	ENSPNYG00000018866	bms1	99	76.727	Pundamilia_nyererei
ENSXMAG00000014236	bms1	96	75.975	ENSPNAG00000000676	bms1	87	77.456	Pygocentrus_nattereri
ENSXMAG00000014236	bms1	79	64.639	ENSRNOG00000006576	Bms1	84	66.332	Rattus_norvegicus
ENSXMAG00000014236	bms1	97	65.385	ENSRROG00000040101	BMS1	85	66.290	Rhinopithecus_roxellana
ENSXMAG00000014236	bms1	71	53.868	YPL217C	-	75	53.295	Saccharomyces_cerevisiae
ENSXMAG00000014236	bms1	98	66.882	ENSSBOG00000035778	BMS1	85	66.721	Saimiri_boliviensis_boliviensis
ENSXMAG00000014236	bms1	99	63.873	ENSSHAG00000005062	BMS1	80	71.429	Sarcophilus_harrisii
ENSXMAG00000014236	bms1	55	77.077	ENSSFOG00015022313	bms1	88	79.032	Scleropages_formosus
ENSXMAG00000014236	bms1	60	74.966	ENSSMAG00000019966	bms1	99	76.371	Scophthalmus_maximus
ENSXMAG00000014236	bms1	99	79.136	ENSSDUG00000016875	bms1	99	79.055	Seriola_dumerili
ENSXMAG00000014236	bms1	99	78.508	ENSSLDG00000015199	bms1	99	78.345	Seriola_lalandi_dorsalis
ENSXMAG00000014236	bms1	53	75.000	ENSSARG00000014407	BMS1	66	75.000	Sorex_araneus
ENSXMAG00000014236	bms1	97	69.854	ENSSPUG00000014454	BMS1	84	69.530	Sphenodon_punctatus
ENSXMAG00000014236	bms1	98	66.920	ENSSSCG00000010198	BMS1	85	67.857	Sus_scrofa
ENSXMAG00000014236	bms1	95	69.903	ENSTGUG00000006302	-	84	69.741	Taeniopygia_guttata
ENSXMAG00000014236	bms1	99	73.350	ENSTRUG00000008028	bms1	98	73.225	Takifugu_rubripes
ENSXMAG00000014236	bms1	98	74.194	ENSTNIG00000006216	bms1	87	74.716	Tetraodon_nigroviridis
ENSXMAG00000014236	bms1	65	66.780	ENSTBEG00000001673	-	62	66.781	Tupaia_belangeri
ENSXMAG00000014236	bms1	99	60.731	ENSTTRG00000007983	BMS1	77	79.459	Tursiops_truncatus
ENSXMAG00000014236	bms1	97	65.891	ENSUAMG00000023996	BMS1	85	67.154	Ursus_americanus
ENSXMAG00000014236	bms1	97	65.891	ENSUMAG00000016523	BMS1	85	66.829	Ursus_maritimus
ENSXMAG00000014236	bms1	80	71.181	ENSVPAG00000007477	BMS1	80	70.690	Vicugna_pacos
ENSXMAG00000014236	bms1	96	67.375	ENSVVUG00000021305	BMS1	87	67.360	Vulpes_vulpes
ENSXMAG00000014236	bms1	98	62.705	ENSXETG00000008158	bms1	89	69.936	Xenopus_tropicalis
ENSXMAG00000014236	bms1	100	95.326	ENSXCOG00000000506	bms1	96	99.755	Xiphophorus_couchianus