EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000014538 (Gene tree)
Gene ID: 102225502
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 83959 bases
Position: chr8:20231-104189
Accession: 102225502
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000014607	ResIII	PF04851.15	6.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000027149	-	6473	XM_023338044	ENSXMAP00000024910	1672 (aa)	XP_023193812	-
ENSXMAT00000014627	-	4086	-	ENSXMAP00000014607	1361 (aa)	-	M4AJG3

Gene Model

Click here to download ENSXMAG00000014538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000014538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000014538	chd1	95	78.621	ENSG00000153922	CHD1	77	77.736	Homo_sapiens
ENSXMAG00000014538	chd1	81	92.650	ENSAPOG00000005764	chd1	94	92.650	Acanthochromis_polyacanthus
ENSXMAG00000014538	chd1	87	89.641	ENSAOCG00000023105	chd1	75	89.975	Amphiprion_ocellaris
ENSXMAG00000014538	chd1	88	90.849	ENSAPEG00000013544	chd1	75	91.486	Amphiprion_percula
ENSXMAG00000014538	chd1	97	86.767	ENSATEG00000010676	chd1	81	85.147	Anabas_testudineus
ENSXMAG00000014538	chd1	85	87.016	ENSAMXG00000010843	chd1	90	87.016	Astyanax_mexicanus
ENSXMAG00000014538	chd1	95	78.653	ENSCATG00000032035	CHD1	77	78.582	Cercocebus_atys
ENSXMAG00000014538	chd1	95	78.653	ENSCSAG00000015339	CHD1	77	77.769	Chlorocebus_sabaeus
ENSXMAG00000014538	chd1	95	76.263	ENSCANG00000036916	CHD1	77	75.667	Colobus_angolensis_palliatus
ENSXMAG00000014538	chd1	95	77.582	ENSCGRG00001023943	Chd1	77	77.532	Cricetulus_griseus_chok1gshd
ENSXMAG00000014538	chd1	95	77.582	ENSCGRG00000008652	Chd1	77	77.532	Cricetulus_griseus_crigri
ENSXMAG00000014538	chd1	87	88.201	ENSCSEG00000009553	chd1	76	88.201	Cynoglossus_semilaevis
ENSXMAG00000014538	chd1	95	77.820	ENSEASG00005016110	CHD1	94	77.862	Equus_asinus_asinus
ENSXMAG00000014538	chd1	88	84.946	ENSELUG00000017677	chd1	74	84.946	Esox_lucius
ENSXMAG00000014538	chd1	87	94.649	ENSFHEG00000021164	chd1	88	94.649	Fundulus_heteroclitus
ENSXMAG00000014538	chd1	95	83.243	ENSGMOG00000001537	chd1	73	82.682	Gadus_morhua
ENSXMAG00000014538	chd1	91	78.732	ENSGALG00000031327	-	74	79.622	Gallus_gallus
ENSXMAG00000014538	chd1	99	94.620	ENSGAFG00000019880	chd1	86	94.620	Gambusia_affinis
ENSXMAG00000014538	chd1	95	75.153	ENSGGOG00000011463	CHD1	77	73.900	Gorilla_gorilla
ENSXMAG00000014538	chd1	87	89.223	ENSHCOG00000014222	chd1	75	89.390	Hippocampus_comes
ENSXMAG00000014538	chd1	87	87.722	ENSIPUG00000001369	chd1	76	86.352	Ictalurus_punctatus
ENSXMAG00000014538	chd1	74	77.448	ENSLAFG00000023183	CHD1	94	76.303	Loxodonta_africana
ENSXMAG00000014538	chd1	95	78.653	ENSMFAG00000031226	CHD1	77	78.582	Macaca_fascicularis
ENSXMAG00000014538	chd1	95	78.284	ENSMMUG00000014090	CHD1	92	77.727	Macaca_mulatta
ENSXMAG00000014538	chd1	95	78.632	ENSMNEG00000045073	CHD1	77	78.582	Macaca_nemestrina
ENSXMAG00000014538	chd1	95	73.559	ENSMLEG00000041096	CHD1	76	73.552	Mandrillus_leucophaeus
ENSXMAG00000014538	chd1	87	91.201	ENSMZEG00005010957	chd1	89	91.201	Maylandia_zebra
ENSXMAG00000014538	chd1	95	78.434	ENSMOCG00000019121	Chd1	78	78.075	Microtus_ochrogaster
ENSXMAG00000014538	chd1	55	80.265	ENSMODG00000019266	-	96	81.855	Monodelphis_domestica
ENSXMAG00000014538	chd1	96	88.271	ENSMALG00000013317	chd1	93	87.208	Monopterus_albus
ENSXMAG00000014538	chd1	95	78.067	MGP_CAROLIEiJ_G0021099	Chd1	94	77.756	Mus_caroli
ENSXMAG00000014538	chd1	95	78.041	ENSMUSG00000023852	Chd1	94	77.854	Mus_musculus
ENSXMAG00000014538	chd1	95	77.812	MGP_PahariEiJ_G0023414	Chd1	94	77.778	Mus_pahari
ENSXMAG00000014538	chd1	87	91.201	ENSNBRG00000006860	chd1	75	91.201	Neolamprologus_brichardi
ENSXMAG00000014538	chd1	95	78.621	ENSNLEG00000014493	CHD1	77	77.736	Nomascus_leucogenys
ENSXMAG00000014538	chd1	95	78.108	ENSOANG00000004891	CHD1	71	85.863	Ornithorhynchus_anatinus
ENSXMAG00000014538	chd1	74	86.097	ENSORLG00015016725	chd1	95	86.224	Oryzias_latipes_hsok
ENSXMAG00000014538	chd1	94	77.846	ENSPPAG00000043367	CHD1	78	76.493	Pan_paniscus
ENSXMAG00000014538	chd1	95	78.621	ENSPTRG00000017103	CHD1	77	77.736	Pan_troglodytes
ENSXMAG00000014538	chd1	95	78.653	ENSPANG00000006387	CHD1	77	78.582	Papio_anubis
ENSXMAG00000014538	chd1	89	90.870	ENSPKIG00000024719	chd1	74	88.627	Paramormyrops_kingsleyae
ENSXMAG00000014538	chd1	89	88.633	ENSPMGG00000005785	chd1	91	88.642	Periophthalmus_magnuspinnatus
ENSXMAG00000014538	chd1	94	78.737	ENSPEMG00000015939	Chd1	77	77.626	Peromyscus_maniculatus_bairdii
ENSXMAG00000014538	chd1	64	99.082	ENSPLAG00000006473	-	89	99.082	Poecilia_latipinna
ENSXMAG00000014538	chd1	99	97.087	ENSPREG00000004209	chd1	83	97.087	Poecilia_reticulata
ENSXMAG00000014538	chd1	95	78.298	ENSRNOG00000014434	Chd1	92	77.837	Rattus_norvegicus
ENSXMAG00000014538	chd1	95	78.867	ENSRBIG00000044325	CHD1	78	78.490	Rhinopithecus_bieti
ENSXMAG00000014538	chd1	95	78.806	ENSRROG00000001726	CHD1	77	78.473	Rhinopithecus_roxellana
ENSXMAG00000014538	chd1	85	84.854	ENSSFOG00015007161	chd1	88	84.299	Scleropages_formosus
ENSXMAG00000014538	chd1	96	88.075	ENSSDUG00000018314	chd1	93	86.907	Seriola_dumerili
ENSXMAG00000014538	chd1	65	91.124	ENSSLDG00000017244	chd1	88	91.818	Seriola_lalandi_dorsalis
ENSXMAG00000014538	chd1	96	88.226	ENSSPAG00000007024	chd1	93	89.601	Stegastes_partitus
ENSXMAG00000014538	chd1	95	78.992	ENSSSCG00000014177	CHD1	89	79.116	Sus_scrofa
ENSXMAG00000014538	chd1	94	86.005	ENSTRUG00000010282	chd1	78	85.019	Takifugu_rubripes
ENSXMAG00000014538	chd1	89	86.266	ENSTNIG00000007101	chd1	95	86.967	Tetraodon_nigroviridis
ENSXMAG00000014538	chd1	99	91.088	ENSXCOG00000017184	chd1	83	91.088	Xiphophorus_couchianus