EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000014701 (Gene tree)
Gene ID: 102225839
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 5677 bases
Position: chr10:24201628-24207304
Accession: 102225839
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000014724	TruB_N	PF01509.18	3.5e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000014744	-	3238	XM_005814359	ENSXMAP00000014724	277 (aa)	XP_005814416	M4AJT0

Gene Model

Click here to download ENSXMAG00000014701's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000014701's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000014701	trub1	88	65.306	ENSG00000165832	TRUB1	70	65.306	Homo_sapiens
ENSXMAG00000014701	trub1	88	85.246	ENSAPOG00000020565	trub1	99	80.586	Acanthochromis_polyacanthus
ENSXMAG00000014701	trub1	88	65.182	ENSAMEG00000014931	TRUB1	70	65.182	Ailuropoda_melanoleuca
ENSXMAG00000014701	trub1	97	78.067	ENSACIG00000003060	trub1	90	78.067	Amphilophus_citrinellus
ENSXMAG00000014701	trub1	88	85.246	ENSAOCG00000017188	trub1	99	80.586	Amphiprion_ocellaris
ENSXMAG00000014701	trub1	94	83.525	ENSAPEG00000015209	trub1	99	80.586	Amphiprion_percula
ENSXMAG00000014701	trub1	89	84.959	ENSATEG00000023291	trub1	88	84.959	Anabas_testudineus
ENSXMAG00000014701	trub1	88	67.213	ENSAPLG00000006808	TRUB1	87	67.213	Anas_platyrhynchos
ENSXMAG00000014701	trub1	88	64.082	ENSACAG00000009282	TRUB1	88	64.082	Anolis_carolinensis
ENSXMAG00000014701	trub1	88	65.306	ENSANAG00000022870	TRUB1	70	65.306	Aotus_nancymaae
ENSXMAG00000014701	trub1	100	80.216	ENSACLG00000000823	trub1	100	80.216	Astatotilapia_calliptera
ENSXMAG00000014701	trub1	90	76.707	ENSAMXG00000015845	trub1	83	76.707	Astyanax_mexicanus
ENSXMAG00000014701	trub1	88	66.531	ENSBTAG00000012955	TRUB1	70	66.531	Bos_taurus
ENSXMAG00000014701	trub1	88	65.306	ENSCJAG00000047815	TRUB1	70	65.306	Callithrix_jacchus
ENSXMAG00000014701	trub1	88	65.714	ENSCAFG00000011688	TRUB1	76	62.921	Canis_familiaris
ENSXMAG00000014701	trub1	88	65.714	ENSCAFG00020013237	TRUB1	76	62.921	Canis_lupus_dingo
ENSXMAG00000014701	trub1	88	65.714	ENSCHIG00000020884	TRUB1	73	65.714	Capra_hircus
ENSXMAG00000014701	trub1	88	64.082	ENSTSYG00000000446	TRUB1	70	64.082	Carlito_syrichta
ENSXMAG00000014701	trub1	76	57.820	ENSCAPG00000017088	TRUB1	82	57.820	Cavia_aperea
ENSXMAG00000014701	trub1	66	65.027	ENSCPOG00000040236	-	75	65.027	Cavia_porcellus
ENSXMAG00000014701	trub1	67	63.978	ENSCPOG00000030129	-	72	63.978	Cavia_porcellus
ENSXMAG00000014701	trub1	88	65.306	ENSCCAG00000028842	TRUB1	70	65.306	Cebus_capucinus
ENSXMAG00000014701	trub1	88	65.306	ENSCATG00000033431	TRUB1	70	65.306	Cercocebus_atys
ENSXMAG00000014701	trub1	66	63.934	ENSCLAG00000008664	TRUB1	75	63.934	Chinchilla_lanigera
ENSXMAG00000014701	trub1	88	65.306	ENSCSAG00000004891	TRUB1	70	65.306	Chlorocebus_sabaeus
ENSXMAG00000014701	trub1	88	58.436	ENSCHOG00000011931	TRUB1	70	58.436	Choloepus_hoffmanni
ENSXMAG00000014701	trub1	94	66.412	ENSCPBG00000003051	TRUB1	90	66.412	Chrysemys_picta_bellii
ENSXMAG00000014701	trub1	88	65.306	ENSCANG00000029445	TRUB1	70	65.306	Colobus_angolensis_palliatus
ENSXMAG00000014701	trub1	86	56.723	ENSCGRG00001010322	-	66	56.327	Cricetulus_griseus_chok1gshd
ENSXMAG00000014701	trub1	77	65.094	ENSCGRG00001016772	-	71	64.953	Cricetulus_griseus_chok1gshd
ENSXMAG00000014701	trub1	86	64.286	ENSCGRG00000010806	Trub1	81	61.509	Cricetulus_griseus_crigri
ENSXMAG00000014701	trub1	92	77.953	ENSCSEG00000011261	trub1	82	78.261	Cynoglossus_semilaevis
ENSXMAG00000014701	trub1	97	80.669	ENSCVAG00000008791	trub1	83	80.669	Cyprinodon_variegatus
ENSXMAG00000014701	trub1	90	73.494	ENSDARG00000053805	trub1	99	82.353	Danio_rerio
ENSXMAG00000014701	trub1	88	63.265	ENSDNOG00000001069	TRUB1	70	63.265	Dasypus_novemcinctus
ENSXMAG00000014701	trub1	86	64.706	ENSDORG00000010431	Trub1	71	64.490	Dipodomys_ordii
ENSXMAG00000014701	trub1	65	63.504	ENSETEG00000009183	TRUB1	50	63.504	Echinops_telfairi
ENSXMAG00000014701	trub1	88	65.306	ENSEASG00005014739	TRUB1	70	65.306	Equus_asinus_asinus
ENSXMAG00000014701	trub1	88	65.306	ENSECAG00000007177	TRUB1	70	65.306	Equus_caballus
ENSXMAG00000014701	trub1	88	57.143	ENSEEUG00000013993	TRUB1	72	56.154	Erinaceus_europaeus
ENSXMAG00000014701	trub1	94	77.395	ENSELUG00000000502	trub1	91	77.395	Esox_lucius
ENSXMAG00000014701	trub1	88	65.714	ENSFCAG00000031927	TRUB1	70	65.714	Felis_catus
ENSXMAG00000014701	trub1	78	66.977	ENSFALG00000002232	TRUB1	83	66.977	Ficedula_albicollis
ENSXMAG00000014701	trub1	66	66.120	ENSFDAG00000008140	TRUB1	75	66.120	Fukomys_damarensis
ENSXMAG00000014701	trub1	99	85.818	ENSFHEG00000004016	trub1	95	85.818	Fundulus_heteroclitus
ENSXMAG00000014701	trub1	89	65.182	ENSGALG00000009091	TRUB1	87	65.182	Gallus_gallus
ENSXMAG00000014701	trub1	92	95.331	ENSGAFG00000009193	trub1	90	95.331	Gambusia_affinis
ENSXMAG00000014701	trub1	71	84.694	ENSGACG00000015387	trub1	96	84.694	Gasterosteus_aculeatus
ENSXMAG00000014701	trub1	88	68.980	ENSGAGG00000009758	TRUB1	70	68.980	Gopherus_agassizii
ENSXMAG00000014701	trub1	88	65.306	ENSGGOG00000004583	TRUB1	70	65.306	Gorilla_gorilla
ENSXMAG00000014701	trub1	100	79.856	ENSHBUG00000016787	trub1	100	79.856	Haplochromis_burtoni
ENSXMAG00000014701	trub1	88	64.082	ENSHGLG00000015314	TRUB1	77	60.300	Heterocephalus_glaber_female
ENSXMAG00000014701	trub1	66	65.574	ENSHGLG00100009183	TRUB1	77	65.574	Heterocephalus_glaber_male
ENSXMAG00000014701	trub1	99	79.562	ENSHCOG00000017877	trub1	99	79.562	Hippocampus_comes
ENSXMAG00000014701	trub1	89	77.328	ENSIPUG00000017559	trub1	87	77.328	Ictalurus_punctatus
ENSXMAG00000014701	trub1	85	67.234	ENSSTOG00000003641	TRUB1	71	67.234	Ictidomys_tridecemlineatus
ENSXMAG00000014701	trub1	88	64.490	ENSJJAG00000011800	Trub1	72	64.490	Jaculus_jaculus
ENSXMAG00000014701	trub1	100	79.856	ENSKMAG00000006232	trub1	100	79.856	Kryptolebias_marmoratus
ENSXMAG00000014701	trub1	98	80.147	ENSLBEG00000026722	trub1	95	80.147	Labrus_bergylta
ENSXMAG00000014701	trub1	93	71.318	ENSLACG00000014885	TRUB1	86	71.318	Latimeria_chalumnae
ENSXMAG00000014701	trub1	94	73.846	ENSLOCG00000012979	trub1	88	73.846	Lepisosteus_oculatus
ENSXMAG00000014701	trub1	90	65.079	ENSLAFG00000015452	TRUB1	72	65.079	Loxodonta_africana
ENSXMAG00000014701	trub1	88	65.306	ENSMFAG00000031767	TRUB1	70	65.306	Macaca_fascicularis
ENSXMAG00000014701	trub1	88	65.306	ENSMMUG00000001902	TRUB1	70	65.306	Macaca_mulatta
ENSXMAG00000014701	trub1	88	60.816	ENSMNEG00000044646	TRUB1	69	60.816	Macaca_nemestrina
ENSXMAG00000014701	trub1	88	65.306	ENSMLEG00000042655	TRUB1	70	65.306	Mandrillus_leucophaeus
ENSXMAG00000014701	trub1	100	80.216	ENSMZEG00005024095	trub1	100	80.216	Maylandia_zebra
ENSXMAG00000014701	trub1	89	65.992	ENSMGAG00000011135	TRUB1	85	65.992	Meleagris_gallopavo
ENSXMAG00000014701	trub1	86	62.185	ENSMAUG00000011101	Trub1	72	62.041	Mesocricetus_auratus
ENSXMAG00000014701	trub1	88	64.898	ENSMICG00000016324	TRUB1	70	64.898	Microcebus_murinus
ENSXMAG00000014701	trub1	90	62.846	ENSMOCG00000017759	Trub1	79	62.692	Microtus_ochrogaster
ENSXMAG00000014701	trub1	88	66.393	ENSMODG00000009676	TRUB1	71	64.844	Monodelphis_domestica
ENSXMAG00000014701	trub1	88	65.323	MGP_CAROLIEiJ_G0023100	Trub1	76	66.845	Mus_caroli
ENSXMAG00000014701	trub1	88	64.516	ENSMUSG00000025086	Trub1	76	65.775	Mus_musculus
ENSXMAG00000014701	trub1	90	64.286	MGP_PahariEiJ_G0014588	Trub1	75	64.286	Mus_pahari
ENSXMAG00000014701	trub1	88	64.516	MGP_SPRETEiJ_G0024021	Trub1	76	65.775	Mus_spretus
ENSXMAG00000014701	trub1	88	65.714	ENSMPUG00000003556	TRUB1	70	65.714	Mustela_putorius_furo
ENSXMAG00000014701	trub1	88	64.490	ENSMLUG00000017686	TRUB1	72	64.490	Myotis_lucifugus
ENSXMAG00000014701	trub1	88	64.898	ENSNGAG00000018682	Trub1	70	64.898	Nannospalax_galili
ENSXMAG00000014701	trub1	92	83.071	ENSNBRG00000023393	trub1	91	83.071	Neolamprologus_brichardi
ENSXMAG00000014701	trub1	88	65.306	ENSNLEG00000016345	TRUB1	70	65.306	Nomascus_leucogenys
ENSXMAG00000014701	trub1	73	69.652	ENSMEUG00000006603	TRUB1	80	66.977	Notamacropus_eugenii
ENSXMAG00000014701	trub1	88	64.490	ENSOPRG00000009371	TRUB1	71	64.490	Ochotona_princeps
ENSXMAG00000014701	trub1	88	63.265	ENSODEG00000010854	TRUB1	70	63.265	Octodon_degus
ENSXMAG00000014701	trub1	97	81.041	ENSONIG00000007249	trub1	98	81.041	Oreochromis_niloticus
ENSXMAG00000014701	trub1	90	65.726	ENSOANG00000001556	TRUB1	87	63.636	Ornithorhynchus_anatinus
ENSXMAG00000014701	trub1	88	64.490	ENSOCUG00000009456	TRUB1	71	64.490	Oryctolagus_cuniculus
ENSXMAG00000014701	trub1	98	80.220	ENSORLG00000029719	trub1	98	80.220	Oryzias_latipes
ENSXMAG00000014701	trub1	98	79.853	ENSORLG00020016767	trub1	96	79.853	Oryzias_latipes_hni
ENSXMAG00000014701	trub1	99	78.339	ENSORLG00015014728	trub1	99	78.339	Oryzias_latipes_hsok
ENSXMAG00000014701	trub1	94	81.609	ENSOMEG00000014556	trub1	92	81.609	Oryzias_melastigma
ENSXMAG00000014701	trub1	88	65.306	ENSOGAG00000015895	TRUB1	70	65.306	Otolemur_garnettii
ENSXMAG00000014701	trub1	88	63.889	ENSOARG00000015591	TRUB1	77	61.029	Ovis_aries
ENSXMAG00000014701	trub1	88	65.306	ENSPPAG00000043645	TRUB1	70	65.306	Pan_paniscus
ENSXMAG00000014701	trub1	88	65.306	ENSPPRG00000007096	TRUB1	70	65.306	Panthera_pardus
ENSXMAG00000014701	trub1	88	65.306	ENSPTIG00000006378	TRUB1	70	65.306	Panthera_tigris_altaica
ENSXMAG00000014701	trub1	88	65.306	ENSPTRG00000002964	TRUB1	70	65.306	Pan_troglodytes
ENSXMAG00000014701	trub1	88	65.306	ENSPANG00000020712	TRUB1	70	65.306	Papio_anubis
ENSXMAG00000014701	trub1	61	76.471	ENSPKIG00000003852	trub1	73	76.471	Paramormyrops_kingsleyae
ENSXMAG00000014701	trub1	93	67.050	ENSPSIG00000012877	TRUB1	90	67.050	Pelodiscus_sinensis
ENSXMAG00000014701	trub1	96	75.849	ENSPMGG00000000075	trub1	94	75.849	Periophthalmus_magnuspinnatus
ENSXMAG00000014701	trub1	94	62.595	ENSPEMG00000011156	Trub1	77	62.595	Peromyscus_maniculatus_bairdii
ENSXMAG00000014701	trub1	88	66.393	ENSPCIG00000009729	TRUB1	70	64.341	Phascolarctos_cinereus
ENSXMAG00000014701	trub1	99	96.337	ENSPFOG00000009950	trub1	100	96.337	Poecilia_formosa
ENSXMAG00000014701	trub1	100	96.029	ENSPLAG00000013855	trub1	97	96.029	Poecilia_latipinna
ENSXMAG00000014701	trub1	100	96.029	ENSPMEG00000009064	trub1	100	96.029	Poecilia_mexicana
ENSXMAG00000014701	trub1	100	94.224	ENSPREG00000003343	trub1	100	94.224	Poecilia_reticulata
ENSXMAG00000014701	trub1	88	64.898	ENSPPYG00000002676	TRUB1	70	64.898	Pongo_abelii
ENSXMAG00000014701	trub1	90	59.127	ENSPCAG00000008427	TRUB1	72	59.127	Procavia_capensis
ENSXMAG00000014701	trub1	88	59.592	ENSPCOG00000024360	TRUB1	68	59.592	Propithecus_coquereli
ENSXMAG00000014701	trub1	73	68.317	ENSPVAG00000007575	TRUB1	77	68.317	Pteropus_vampyrus
ENSXMAG00000014701	trub1	100	80.216	ENSPNYG00000018614	trub1	100	80.216	Pundamilia_nyererei
ENSXMAG00000014701	trub1	96	62.547	ENSPNAG00000006881	trub1	87	62.547	Pygocentrus_nattereri
ENSXMAG00000014701	trub1	90	63.492	ENSRNOG00000017321	Trub1	74	63.492	Rattus_norvegicus
ENSXMAG00000014701	trub1	88	56.275	ENSRBIG00000033423	TRUB1	68	56.275	Rhinopithecus_bieti
ENSXMAG00000014701	trub1	88	65.306	ENSRROG00000033902	TRUB1	70	65.306	Rhinopithecus_roxellana
ENSXMAG00000014701	trub1	88	65.306	ENSSBOG00000024237	TRUB1	70	65.306	Saimiri_boliviensis_boliviensis
ENSXMAG00000014701	trub1	77	66.977	ENSSHAG00000009346	TRUB1	72	66.977	Sarcophilus_harrisii
ENSXMAG00000014701	trub1	95	75.000	ENSSFOG00015022124	trub1	90	75.000	Scleropages_formosus
ENSXMAG00000014701	trub1	95	82.642	ENSSMAG00000001020	trub1	94	82.642	Scophthalmus_maximus
ENSXMAG00000014701	trub1	97	81.041	ENSSDUG00000016414	trub1	97	83.643	Seriola_dumerili
ENSXMAG00000014701	trub1	97	80.669	ENSSLDG00000015486	trub1	97	83.271	Seriola_lalandi_dorsalis
ENSXMAG00000014701	trub1	94	65.399	ENSSPUG00000001642	TRUB1	90	65.399	Sphenodon_punctatus
ENSXMAG00000014701	trub1	100	80.576	ENSSPAG00000001217	trub1	100	80.576	Stegastes_partitus
ENSXMAG00000014701	trub1	90	64.683	ENSSSCG00000010653	TRUB1	73	64.683	Sus_scrofa
ENSXMAG00000014701	trub1	88	66.393	ENSTGUG00000010971	TRUB1	91	64.314	Taeniopygia_guttata
ENSXMAG00000014701	trub1	76	55.924	ENSTBEG00000002880	TRUB1	83	55.924	Tupaia_belangeri
ENSXMAG00000014701	trub1	73	68.317	ENSTTRG00000005767	TRUB1	77	68.317	Tursiops_truncatus
ENSXMAG00000014701	trub1	88	65.714	ENSUAMG00000024876	TRUB1	70	65.714	Ursus_americanus
ENSXMAG00000014701	trub1	88	65.714	ENSUMAG00000002411	TRUB1	72	67.760	Ursus_maritimus
ENSXMAG00000014701	trub1	88	65.714	ENSVPAG00000005507	TRUB1	70	65.714	Vicugna_pacos
ENSXMAG00000014701	trub1	88	65.714	ENSVVUG00000010085	TRUB1	59	65.714	Vulpes_vulpes
ENSXMAG00000014701	trub1	88	66.939	ENSXETG00000023828	trub1	88	66.939	Xenopus_tropicalis
ENSXMAG00000014701	trub1	90	98.400	ENSXCOG00000017847	trub1	88	98.400	Xiphophorus_couchianus