EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000014783 (Gene tree)
Gene ID: 102229964
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 15852 bases
Position: chr5:28250493-28266344
Accession: 102229964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000014865	RNA_bind	PF08675.11	1.6e-33	1	1
ENSXMAP00000014865	CAF1	PF04857.20	1.3e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000014885	-	7145	XM_005813330	ENSXMAP00000014865	682 (aa)	XP_005813387	M4AK71

Gene Model

Click here to download ENSXMAG00000014783's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000014783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000014783	parn	84	73.232	ENSG00000140694	PARN	91	79.661	Homo_sapiens
ENSXMAG00000014783	parn	83	72.384	ENSAMEG00000011208	PARN	90	72.384	Ailuropoda_melanoleuca
ENSXMAG00000014783	parn	87	78.627	ENSACIG00000000619	parn	100	78.627	Amphilophus_citrinellus
ENSXMAG00000014783	parn	100	82.583	ENSAOCG00000003465	parn	100	83.164	Amphiprion_ocellaris
ENSXMAG00000014783	parn	73	87.776	ENSAPEG00000010661	parn	95	87.776	Amphiprion_percula
ENSXMAG00000014783	parn	100	83.796	ENSATEG00000004661	parn	100	83.796	Anabas_testudineus
ENSXMAG00000014783	parn	83	71.747	ENSAPLG00000013914	PARN	91	72.260	Anas_platyrhynchos
ENSXMAG00000014783	parn	84	73.693	ENSACAG00000004973	PARN	90	73.367	Anolis_carolinensis
ENSXMAG00000014783	parn	84	73.232	ENSANAG00000031516	PARN	94	79.661	Aotus_nancymaae
ENSXMAG00000014783	parn	100	83.626	ENSACLG00000004742	parn	100	83.772	Astatotilapia_calliptera
ENSXMAG00000014783	parn	100	70.160	ENSAMXG00000012390	parn	100	69.869	Astyanax_mexicanus
ENSXMAG00000014783	parn	84	69.865	ENSBTAG00000018097	PARN	91	71.857	Bos_taurus
ENSXMAG00000014783	parn	84	73.401	ENSCJAG00000015866	PARN	94	79.661	Callithrix_jacchus
ENSXMAG00000014783	parn	84	71.549	ENSCAFG00000018795	PARN	92	71.549	Canis_familiaris
ENSXMAG00000014783	parn	84	71.717	ENSCAFG00020024126	PARN	92	71.717	Canis_lupus_dingo
ENSXMAG00000014783	parn	84	72.727	ENSCHIG00000018143	PARN	92	72.727	Capra_hircus
ENSXMAG00000014783	parn	69	51.559	ENSCAPG00000007984	PARN	78	51.559	Cavia_aperea
ENSXMAG00000014783	parn	84	72.420	ENSCPOG00000002263	PARN	92	72.420	Cavia_porcellus
ENSXMAG00000014783	parn	84	73.401	ENSCCAG00000030367	PARN	94	79.661	Cebus_capucinus
ENSXMAG00000014783	parn	78	77.612	ENSCATG00000041368	PARN	95	77.612	Cercocebus_atys
ENSXMAG00000014783	parn	84	73.142	ENSCLAG00000015406	PARN	91	73.142	Chinchilla_lanigera
ENSXMAG00000014783	parn	84	73.401	ENSCSAG00000008142	PARN	92	73.401	Chlorocebus_sabaeus
ENSXMAG00000014783	parn	82	56.649	ENSCHOG00000007014	PARN	91	56.649	Choloepus_hoffmanni
ENSXMAG00000014783	parn	74	72.727	ENSCPBG00000006609	PARN	90	72.727	Chrysemys_picta_bellii
ENSXMAG00000014783	parn	75	40.824	ENSCING00000010142	-	99	40.824	Ciona_intestinalis
ENSXMAG00000014783	parn	84	62.645	ENSCANG00000028849	-	88	79.661	Colobus_angolensis_palliatus
ENSXMAG00000014783	parn	83	72.165	ENSCGRG00001012096	Parn	91	72.165	Cricetulus_griseus_chok1gshd
ENSXMAG00000014783	parn	83	72.165	ENSCGRG00000004939	Parn	91	72.165	Cricetulus_griseus_crigri
ENSXMAG00000014783	parn	100	79.009	ENSCSEG00000002064	parn	100	79.009	Cynoglossus_semilaevis
ENSXMAG00000014783	parn	100	89.605	ENSCVAG00000014848	parn	100	89.458	Cyprinodon_variegatus
ENSXMAG00000014783	parn	100	66.185	ENSDARG00000102634	parn	100	66.667	Danio_rerio
ENSXMAG00000014783	parn	84	72.589	ENSDNOG00000000833	PARN	94	77.425	Dasypus_novemcinctus
ENSXMAG00000014783	parn	61	73.864	ENSETEG00000014828	-	69	73.864	Echinops_telfairi
ENSXMAG00000014783	parn	84	72.804	ENSEASG00005011400	PARN	91	72.804	Equus_asinus_asinus
ENSXMAG00000014783	parn	84	72.635	ENSECAG00000017792	PARN	91	72.635	Equus_caballus
ENSXMAG00000014783	parn	71	62.613	ENSEEUG00000010370	PARN	78	62.613	Erinaceus_europaeus
ENSXMAG00000014783	parn	100	73.692	ENSELUG00000013139	parn	90	73.692	Esox_lucius
ENSXMAG00000014783	parn	84	72.222	ENSFCAG00000044961	PARN	89	77.966	Felis_catus
ENSXMAG00000014783	parn	84	71.525	ENSFALG00000003911	PARN	90	71.525	Ficedula_albicollis
ENSXMAG00000014783	parn	84	72.927	ENSFDAG00000009234	PARN	92	72.927	Fukomys_damarensis
ENSXMAG00000014783	parn	87	86.723	ENSFHEG00000013738	parn	92	96.610	Fundulus_heteroclitus
ENSXMAG00000014783	parn	81	82.577	ENSGMOG00000003231	parn	99	82.577	Gadus_morhua
ENSXMAG00000014783	parn	90	69.074	ENSGALG00000003091	PARN	100	69.062	Gallus_gallus
ENSXMAG00000014783	parn	100	97.515	ENSGAFG00000011061	parn	100	97.515	Gambusia_affinis
ENSXMAG00000014783	parn	84	82.180	ENSGACG00000019501	parn	100	73.372	Gasterosteus_aculeatus
ENSXMAG00000014783	parn	84	73.232	ENSGGOG00000025224	PARN	92	79.661	Gorilla_gorilla
ENSXMAG00000014783	parn	100	83.504	ENSHBUG00000017906	parn	100	83.796	Haplochromis_burtoni
ENSXMAG00000014783	parn	84	72.175	ENSHGLG00000010886	PARN	92	72.175	Heterocephalus_glaber_female
ENSXMAG00000014783	parn	84	72.175	ENSHGLG00100014659	PARN	92	72.175	Heterocephalus_glaber_male
ENSXMAG00000014783	parn	81	79.455	ENSHCOG00000008683	parn	95	79.455	Hippocampus_comes
ENSXMAG00000014783	parn	100	59.827	ENSIPUG00000012401	parn	100	59.483	Ictalurus_punctatus
ENSXMAG00000014783	parn	84	72.391	ENSSTOG00000007519	PARN	92	72.391	Ictidomys_tridecemlineatus
ENSXMAG00000014783	parn	84	71.843	ENSJJAG00000023049	Parn	92	71.843	Jaculus_jaculus
ENSXMAG00000014783	parn	100	85.777	ENSKMAG00000009462	parn	100	85.777	Kryptolebias_marmoratus
ENSXMAG00000014783	parn	93	83.568	ENSLBEG00000009167	parn	99	83.568	Labrus_bergylta
ENSXMAG00000014783	parn	74	74.008	ENSLACG00000004207	PARN	100	72.877	Latimeria_chalumnae
ENSXMAG00000014783	parn	100	69.397	ENSLOCG00000000715	parn	100	69.684	Lepisosteus_oculatus
ENSXMAG00000014783	parn	84	73.413	ENSLAFG00000015036	PARN	92	73.413	Loxodonta_africana
ENSXMAG00000014783	parn	84	70.034	ENSMFAG00000044852	PARN	88	79.661	Macaca_fascicularis
ENSXMAG00000014783	parn	84	73.232	ENSMMUG00000018849	PARN	88	79.661	Macaca_mulatta
ENSXMAG00000014783	parn	84	73.401	ENSMNEG00000045108	PARN	88	79.661	Macaca_nemestrina
ENSXMAG00000014783	parn	84	73.232	ENSMLEG00000031743	PARN	88	79.661	Mandrillus_leucophaeus
ENSXMAG00000014783	parn	100	82.824	ENSMAMG00000006939	parn	100	82.969	Mastacembelus_armatus
ENSXMAG00000014783	parn	100	83.626	ENSMZEG00005013590	parn	100	83.772	Maylandia_zebra
ENSXMAG00000014783	parn	83	69.336	ENSMGAG00000001004	PARN	91	69.336	Meleagris_gallopavo
ENSXMAG00000014783	parn	83	66.667	ENSMAUG00000008025	Parn	91	66.667	Mesocricetus_auratus
ENSXMAG00000014783	parn	84	72.896	ENSMICG00000016053	PARN	91	77.966	Microcebus_murinus
ENSXMAG00000014783	parn	72	78.182	ENSMOCG00000022211	Parn	100	78.182	Microtus_ochrogaster
ENSXMAG00000014783	parn	81	85.353	ENSMMOG00000011333	parn	90	85.353	Mola_mola
ENSXMAG00000014783	parn	72	80.684	ENSMODG00000004915	PARN	99	80.684	Monodelphis_domestica
ENSXMAG00000014783	parn	96	82.496	ENSMALG00000019426	parn	94	87.906	Monopterus_albus
ENSXMAG00000014783	parn	83	71.478	MGP_CAROLIEiJ_G0020466	Parn	91	71.478	Mus_caroli
ENSXMAG00000014783	parn	83	71.306	ENSMUSG00000022685	Parn	100	74.390	Mus_musculus
ENSXMAG00000014783	parn	83	71.649	MGP_PahariEiJ_G0016172	Parn	91	71.649	Mus_pahari
ENSXMAG00000014783	parn	83	71.429	MGP_SPRETEiJ_G0021361	Parn	91	71.429	Mus_spretus
ENSXMAG00000014783	parn	84	72.250	ENSMPUG00000014464	PARN	92	72.250	Mustela_putorius_furo
ENSXMAG00000014783	parn	72	77.576	ENSMLUG00000005414	PARN	100	77.576	Myotis_lucifugus
ENSXMAG00000014783	parn	81	87.342	ENSNBRG00000006805	parn	93	87.342	Neolamprologus_brichardi
ENSXMAG00000014783	parn	84	73.569	ENSNLEG00000010241	PARN	91	79.661	Nomascus_leucogenys
ENSXMAG00000014783	parn	69	65.000	ENSMEUG00000008178	-	74	65.000	Notamacropus_eugenii
ENSXMAG00000014783	parn	82	68.048	ENSOPRG00000012187	PARN	91	68.048	Ochotona_princeps
ENSXMAG00000014783	parn	84	68.512	ENSODEG00000001617	PARN	91	68.512	Octodon_degus
ENSXMAG00000014783	parn	100	83.504	ENSONIG00000000151	parn	100	83.796	Oreochromis_niloticus
ENSXMAG00000014783	parn	83	72.355	ENSOCUG00000000322	PARN	91	72.355	Oryctolagus_cuniculus
ENSXMAG00000014783	parn	100	82.310	ENSORLG00020010313	parn	100	82.456	Oryzias_latipes_hni
ENSXMAG00000014783	parn	100	82.456	ENSORLG00015000300	parn	100	82.602	Oryzias_latipes_hsok
ENSXMAG00000014783	parn	100	81.460	ENSOMEG00000019555	parn	100	80.848	Oryzias_melastigma
ENSXMAG00000014783	parn	72	77.621	ENSOGAG00000014626	PARN	100	77.621	Otolemur_garnettii
ENSXMAG00000014783	parn	72	79.596	ENSOARG00000007574	PARN	100	79.596	Ovis_aries
ENSXMAG00000014783	parn	84	73.064	ENSPPAG00000031438	PARN	91	79.661	Pan_paniscus
ENSXMAG00000014783	parn	84	72.222	ENSPPRG00000018583	PARN	89	77.966	Panthera_pardus
ENSXMAG00000014783	parn	84	72.222	ENSPTIG00000012135	PARN	89	77.966	Panthera_tigris_altaica
ENSXMAG00000014783	parn	84	73.064	ENSPTRG00000007792	PARN	91	79.661	Pan_troglodytes
ENSXMAG00000014783	parn	84	70.875	ENSPANG00000020099	PARN	88	79.661	Papio_anubis
ENSXMAG00000014783	parn	99	68.324	ENSPKIG00000022807	parn	91	73.196	Paramormyrops_kingsleyae
ENSXMAG00000014783	parn	83	73.504	ENSPSIG00000014804	PARN	91	73.504	Pelodiscus_sinensis
ENSXMAG00000014783	parn	90	76.098	ENSPMGG00000014431	parn	85	76.748	Periophthalmus_magnuspinnatus
ENSXMAG00000014783	parn	83	70.224	ENSPEMG00000018439	Parn	91	70.224	Peromyscus_maniculatus_bairdii
ENSXMAG00000014783	parn	76	69.364	ENSPMAG00000003956	parn	98	69.364	Petromyzon_marinus
ENSXMAG00000014783	parn	62	72.170	ENSPCIG00000001259	PARN	91	79.661	Phascolarctos_cinereus
ENSXMAG00000014783	parn	100	96.633	ENSPFOG00000012823	parn	100	96.633	Poecilia_formosa
ENSXMAG00000014783	parn	100	96.925	ENSPLAG00000006395	parn	100	96.925	Poecilia_latipinna
ENSXMAG00000014783	parn	100	96.633	ENSPMEG00000007711	parn	100	96.633	Poecilia_mexicana
ENSXMAG00000014783	parn	100	96.925	ENSPREG00000000147	parn	100	96.925	Poecilia_reticulata
ENSXMAG00000014783	parn	84	72.651	ENSPPYG00000007123	PARN	92	72.651	Pongo_abelii
ENSXMAG00000014783	parn	79	62.745	ENSPCAG00000001741	PARN	91	62.745	Procavia_capensis
ENSXMAG00000014783	parn	84	69.748	ENSPCOG00000019292	PARN	91	77.966	Propithecus_coquereli
ENSXMAG00000014783	parn	83	69.402	ENSPVAG00000002547	PARN	92	69.402	Pteropus_vampyrus
ENSXMAG00000014783	parn	100	83.212	ENSPNYG00000006835	parn	100	83.504	Pundamilia_nyererei
ENSXMAG00000014783	parn	93	70.110	ENSPNAG00000018905	parn	100	69.484	Pygocentrus_nattereri
ENSXMAG00000014783	parn	100	63.128	ENSRNOG00000002912	Parn	96	76.531	Rattus_norvegicus
ENSXMAG00000014783	parn	84	71.549	ENSSBOG00000034726	PARN	94	79.661	Saimiri_boliviensis_boliviensis
ENSXMAG00000014783	parn	61	79.187	ENSSHAG00000008493	PARN	93	79.187	Sarcophilus_harrisii
ENSXMAG00000014783	parn	100	69.187	ENSSFOG00015014165	parn	98	73.500	Scleropages_formosus
ENSXMAG00000014783	parn	100	79.685	ENSSMAG00000000685	parn	100	79.685	Scophthalmus_maximus
ENSXMAG00000014783	parn	100	83.576	ENSSDUG00000014555	parn	100	84.157	Seriola_dumerili
ENSXMAG00000014783	parn	64	79.310	ENSSARG00000014339	PARN	75	79.310	Sorex_araneus
ENSXMAG00000014783	parn	84	71.886	ENSSPUG00000007719	PARN	92	71.886	Sphenodon_punctatus
ENSXMAG00000014783	parn	100	84.380	ENSSPAG00000007095	parn	100	84.526	Stegastes_partitus
ENSXMAG00000014783	parn	84	72.297	ENSSSCG00000007878	PARN	82	72.297	Sus_scrofa
ENSXMAG00000014783	parn	83	71.307	ENSTGUG00000004971	PARN	96	68.971	Taeniopygia_guttata
ENSXMAG00000014783	parn	51	30.084	ENSTGUG00000011418	PNLDC1	68	30.084	Taeniopygia_guttata
ENSXMAG00000014783	parn	100	73.508	ENSTNIG00000008252	parn	90	85.263	Tetraodon_nigroviridis
ENSXMAG00000014783	parn	76	61.308	ENSTBEG00000010407	PARN	91	61.308	Tupaia_belangeri
ENSXMAG00000014783	parn	83	68.143	ENSTTRG00000002843	PARN	92	68.143	Tursiops_truncatus
ENSXMAG00000014783	parn	64	69.336	ENSUAMG00000008283	PARN	94	65.675	Ursus_americanus
ENSXMAG00000014783	parn	84	72.391	ENSUMAG00000004527	PARN	92	72.391	Ursus_maritimus
ENSXMAG00000014783	parn	83	69.728	ENSVPAG00000008968	PARN	94	69.728	Vicugna_pacos
ENSXMAG00000014783	parn	84	71.886	ENSVVUG00000019509	PARN	92	71.886	Vulpes_vulpes
ENSXMAG00000014783	parn	83	69.625	ENSXETG00000010994	parn	100	74.528	Xenopus_tropicalis
ENSXMAG00000014783	parn	87	93.782	ENSXCOG00000015990	parn	100	93.782	Xiphophorus_couchianus